Wall clock time and date at job start Tue Mar 31 2020 15:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48505 * 109.47107 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99831 * 3 2 1 6 6 H 1.48496 * 109.47303 * 150.00273 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36934 * 119.99352 * 17.26040 * 7 2 1 10 10 C 1.46932 * 120.62713 * 207.39446 * 9 7 2 11 11 C 1.53189 * 108.89486 * 233.67791 * 10 9 7 12 12 C 1.53045 * 109.30964 * 305.29189 * 11 10 9 13 13 N 1.46499 * 109.46217 * 181.38826 * 12 11 10 14 14 C 1.34768 * 120.00306 * 154.99730 * 13 12 11 15 15 O 1.21594 * 120.00282 * 0.02562 * 14 13 12 16 16 C 1.47509 * 119.99893 * 179.97438 * 14 13 12 17 17 C 1.38674 * 120.34436 * 0.02562 * 16 14 13 18 18 C 1.38983 * 120.63601 * 179.97438 * 17 16 14 19 19 C 1.36212 * 121.14527 * 359.97438 * 18 17 16 20 20 C 1.40693 * 120.16764 * 359.97438 * 19 18 17 21 21 N 1.33764 * 120.97928 * 180.02562 * 20 19 18 22 22 C 1.31324 * 119.73421 * 179.97438 * 21 20 19 23 23 C 1.39643 * 120.68272 * 359.97438 * 22 21 20 24 24 N 1.31441 * 120.64526 * 359.97438 * 23 22 21 25 25 C 1.33493 * 119.72165 * 359.81693 * 24 23 22 26 26 C 1.53044 * 109.53742 * 61.36557 * 12 11 10 27 27 C 1.47199 * 120.82140 * 27.53341 * 9 7 2 28 28 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58807 * 113.81287 * 10 9 7 30 30 H 1.09001 * 109.58443 * 353.53762 * 10 9 7 31 31 H 1.08994 * 109.49818 * 65.24182 * 11 10 9 32 32 H 1.09000 * 109.49753 * 185.34555 * 11 10 9 33 33 H 1.09005 * 109.46192 * 301.34630 * 12 11 10 34 34 H 0.97000 * 119.99313 * 334.99999 * 13 12 11 35 35 H 1.08000 * 119.67459 * 359.97430 * 17 16 14 36 36 H 1.08004 * 119.42892 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.91950 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.65475 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.67618 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.49664 * 58.58635 * 26 12 11 41 41 H 1.09005 * 109.49458 * 178.68121 * 26 12 11 42 42 H 1.09001 * 109.53355 * 6.53767 * 27 9 7 43 43 H 1.09002 * 109.67913 * 246.23555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0757 -4.6095 -0.9954 12 6 0.8160 -4.6926 -1.8607 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1330 -6.0364 -3.1524 16 6 0.2257 -7.1959 -4.6549 17 6 1.5122 -7.4474 -5.1075 18 6 1.7340 -8.3354 -6.1534 19 6 0.6998 -8.9812 -6.7606 20 6 -0.6219 -8.7574 -6.3336 21 7 -1.6496 -9.3832 -6.9180 22 6 -2.8735 -9.1564 -6.4994 23 6 -3.1143 -8.2682 -5.4491 24 7 -2.1200 -7.6428 -4.8593 25 6 -0.8671 -7.8609 -5.2652 26 6 0.4915 -3.3081 -2.4265 27 6 0.2213 -2.3393 -1.2711 28 1 -0.4850 0.8401 0.0004 29 1 1.0553 -4.0719 0.8279 30 1 2.7458 -3.5175 0.7404 31 1 2.9055 -4.2369 -1.5959 32 1 2.3195 -5.6002 -0.6118 33 1 -0.0192 -5.0417 -1.2535 34 1 1.9444 -5.8021 -3.2762 35 1 2.3496 -6.9485 -4.6426 36 1 2.7440 -8.5165 -6.4906 37 1 0.8949 -9.6669 -7.5720 38 1 -3.7023 -9.6621 -6.9724 39 1 -4.1273 -8.0941 -5.1177 40 1 1.3363 -2.9478 -3.0134 41 1 -0.3922 -3.3726 -3.0614 42 1 0.0872 -1.3312 -1.6633 43 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388379902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:57 Heat of formation + Delta-G solvation = 39.526517 kcal Electronic energy + Delta-G solvation = -26884.611509 eV Core-core repulsion = 23122.669444 eV Total energy + Delta-G solvation = -3761.942065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50645 -40.86863 -39.00872 -38.19313 -36.06491 -35.66132 -34.01348 -32.31275 -31.84445 -31.61607 -30.79013 -27.10815 -26.45979 -25.20520 -24.83159 -23.91699 -23.27846 -21.51781 -20.96737 -19.78999 -19.39278 -18.77405 -18.01034 -17.47893 -17.03985 -16.64283 -16.39025 -15.97382 -15.75723 -15.59725 -15.35697 -15.28112 -15.04025 -14.83949 -14.56598 -14.28779 -14.07692 -13.20603 -13.19623 -13.03028 -12.92203 -12.79874 -12.73796 -12.63110 -12.60979 -12.57140 -12.12920 -12.03006 -11.86337 -11.54179 -11.40477 -11.02393 -10.59112 -10.06660 -10.03570 -9.96979 -9.63863 -8.73321 -7.87521 -5.33540 -1.04875 -0.48359 0.59086 1.47630 1.49122 1.58258 1.63406 2.05726 2.16675 2.51534 3.01491 3.05158 3.15749 3.23968 3.28815 3.61601 3.68699 3.71451 3.88046 3.94825 4.06944 4.11543 4.26427 4.32507 4.37461 4.46325 4.58219 4.65416 4.76297 4.80415 4.87878 4.97052 5.04190 5.07112 5.11665 5.13833 5.21418 5.30738 5.45119 5.53053 5.60976 5.63697 5.68393 6.25465 6.37542 6.59085 6.76570 7.12083 7.29844 7.83219 8.36897 9.19840 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.002584 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.460428 B =10833.242793 C =11317.030883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.259 4.259 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.140 3.860 11 C -0.120 4.120 12 C 0.165 3.835 13 N -0.706 5.706 14 C 0.545 3.455 15 O -0.551 6.551 16 C -0.133 4.133 17 C -0.039 4.039 18 C -0.095 4.095 19 C -0.058 4.058 20 C 0.050 3.950 21 N -0.441 5.441 22 C 0.083 3.917 23 C 0.072 3.928 24 N -0.445 5.445 25 C 0.083 3.917 26 C -0.129 4.129 27 C 0.183 3.817 28 H 0.249 0.751 29 H 0.009 0.991 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.413 0.587 35 H 0.172 0.828 36 H 0.190 0.810 37 H 0.168 0.832 38 H 0.219 0.781 39 H 0.200 0.800 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.055 0.945 43 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -22.622 -16.445 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.252 4.252 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.187 1.187 7 C -0.390 4.390 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.160 4.160 12 C 0.060 3.940 13 N -0.359 5.359 14 C 0.332 3.668 15 O -0.429 6.429 16 C -0.138 4.138 17 C -0.059 4.059 18 C -0.115 4.115 19 C -0.078 4.078 20 C -0.073 4.073 21 N -0.155 5.155 22 C -0.093 4.093 23 C -0.103 4.103 24 N -0.158 5.158 25 C -0.042 4.042 26 C -0.169 4.169 27 C 0.056 3.944 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.251 0.749 35 H 0.190 0.810 36 H 0.208 0.792 37 H 0.186 0.814 38 H 0.236 0.764 39 H 0.217 0.783 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 3.753 -22.283 -16.092 27.741 hybrid contribution -0.327 1.298 0.285 1.369 sum 3.426 -20.985 -15.807 26.494 Atomic orbital electron populations 1.70219 1.06980 1.25827 1.55596 1.25894 0.95995 1.01884 1.01397 0.85216 0.78176 0.79251 0.77510 1.21279 1.22567 1.18725 1.19600 0.93191 0.85760 1.40399 0.90571 1.44412 1.35214 1.02569 1.51092 1.21051 0.97890 0.85562 0.94035 1.22141 0.95984 1.00545 0.97300 1.20652 0.98715 0.87486 0.87155 1.45906 1.09754 1.44256 1.35992 1.18439 0.84889 0.80727 0.82707 1.90835 1.23965 1.64276 1.63827 1.19929 0.94109 1.00719 0.99042 1.22029 0.94729 0.94636 0.94508 1.21427 1.01726 0.94209 0.94092 1.21410 0.88478 0.98459 0.99413 1.19915 0.96255 0.96356 0.94822 1.68777 1.00085 1.20684 1.25924 1.24748 0.95711 0.94928 0.93883 1.24866 1.00547 0.91997 0.92917 1.68993 0.99762 1.20789 1.26306 1.19641 0.92214 0.96830 0.95508 1.22289 1.00173 0.95961 0.98507 1.20490 0.87758 0.97349 0.88758 0.94236 0.97272 0.91137 0.90144 0.88883 0.92817 0.74913 0.81041 0.79247 0.81412 0.76411 0.78302 0.91747 0.94193 0.92662 0.99510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 11.18 21.65 0.24 -57.40 16 2 C -0.06 -3.22 4.92 84.86 0.42 -2.80 16 3 Si 0.97 45.21 29.59 68.60 2.03 47.24 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.26 -14.23 9.59 84.04 0.81 -13.43 16 8 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 9 N -0.61 -30.99 3.01 -698.38 -2.10 -33.09 16 10 C 0.14 5.67 6.50 86.36 0.56 6.23 16 11 C -0.12 -3.67 5.55 30.67 0.17 -3.50 16 12 C 0.16 5.76 2.42 45.02 0.11 5.87 16 13 N -0.71 -19.39 5.03 -445.59 -2.24 -21.63 16 14 C 0.55 17.88 7.73 86.69 0.67 18.55 16 15 O -0.55 -23.82 14.85 -4.01 -0.06 -23.88 16 16 C -0.13 -3.43 5.90 -19.86 -0.12 -3.54 16 17 C -0.04 -0.56 9.52 22.55 0.21 -0.34 16 18 C -0.10 -0.91 9.93 21.98 0.22 -0.69 16 19 C -0.06 -0.81 9.97 22.40 0.22 -0.59 16 20 C 0.05 1.10 6.59 40.28 0.27 1.37 16 21 N -0.44 -8.95 10.46 -188.15 -1.97 -10.92 16 22 C 0.08 1.32 11.21 85.11 0.95 2.27 16 23 C 0.07 1.49 11.22 85.09 0.95 2.45 16 24 N -0.44 -13.82 8.56 -187.41 -1.60 -15.43 16 25 C 0.08 2.33 6.60 40.59 0.27 2.60 16 26 C -0.13 -5.38 5.65 30.67 0.17 -5.21 16 27 C 0.18 9.49 5.33 86.31 0.46 9.95 16 28 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 29 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 2.23 7.58 -2.38 -0.02 2.21 16 34 H 0.41 7.55 6.63 -92.71 -0.61 6.94 16 35 H 0.17 1.25 6.37 -2.91 -0.02 1.23 16 36 H 0.19 0.09 8.06 -2.91 -0.02 0.06 16 37 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.05 3.22 6.04 -2.39 -0.01 3.21 16 43 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 Total: -1.00 -85.72 354.45 1.08 -84.64 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.43 Total: 11.27 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.35 Total: 19.19 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -7.67 Total: -138.46 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -85.72 1.08 -84.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388379902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.164 kcal (2) G-P(sol) polarization free energy of solvation -85.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds