Wall clock time and date at job start Tue Mar 31 2020 14:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36018 * 117.00006 * 2 1 4 4 C 1.38674 * 119.97158 * 359.97418 * 3 2 1 5 5 C 1.38499 * 119.98164 * 179.74729 * 4 3 2 6 6 O 1.36013 * 120.03013 * 180.27893 * 5 4 3 7 7 C 1.42898 * 117.00285 * 0.25104 * 6 5 4 8 8 C 1.39271 * 119.93573 * 0.53119 * 5 4 3 9 9 N 1.40294 * 120.02708 * 179.77296 * 8 5 4 10 10 C 1.34781 * 119.99697 * 214.36346 * 9 8 5 11 11 O 1.21298 * 120.00230 * 355.54060 * 10 9 8 12 12 C 1.50703 * 119.99933 * 175.53825 * 10 9 8 13 13 H 1.09005 * 109.46967 * 40.00074 * 12 10 9 14 14 N 1.46892 * 109.47232 * 160.00120 * 12 10 9 15 15 C 1.52995 * 109.47136 * 280.00373 * 12 10 9 16 16 C 1.53004 * 109.47214 * 175.00054 * 15 12 10 17 17 C 1.50698 * 109.47009 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99702 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99802 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46781 * 90.00245 * 21 19 17 23 23 H 1.48495 * 109.47082 * 210.00066 * 21 19 17 24 24 H 1.48501 * 109.47131 * 330.00106 * 21 19 17 25 25 C 1.38704 * 119.94626 * 359.48712 * 8 5 4 26 26 C 1.38341 * 120.01363 * 0.23806 * 25 8 5 27 27 F 1.35102 * 119.97003 * 179.97438 * 26 25 8 28 28 H 1.09008 * 109.47067 * 60.00296 * 1 2 3 29 29 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47536 * 300.00353 * 1 2 3 31 31 H 1.08002 * 120.00585 * 0.02562 * 4 3 2 32 32 H 1.09004 * 109.47067 * 300.00212 * 7 6 5 33 33 H 1.09004 * 109.47117 * 59.99542 * 7 6 5 34 34 H 1.09002 * 109.47580 * 179.97438 * 7 6 5 35 35 H 0.96994 * 120.00497 * 34.36542 * 9 8 5 36 36 H 1.00909 * 110.99922 * 59.99925 * 14 12 10 37 37 H 1.00897 * 111.00368 * 183.95481 * 14 12 10 38 38 H 1.09002 * 109.47368 * 295.00208 * 15 12 10 39 39 H 1.09000 * 109.47623 * 54.99505 * 15 12 10 40 40 H 1.09003 * 109.46610 * 299.99721 * 16 15 12 41 41 H 1.08995 * 109.47191 * 59.99973 * 16 15 12 42 42 H 0.97002 * 119.99696 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.00029 * 180.25338 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2906 2.3746 -0.0005 5 6 1.9191 3.6087 0.0047 6 8 1.1788 4.7497 0.0100 7 6 -0.2425 4.6008 0.0152 8 6 3.3100 3.6803 -0.0006 9 7 3.9487 4.9295 0.0000 10 6 5.1107 5.0924 -0.6631 11 8 5.6457 4.1410 -1.1922 12 6 5.7453 6.4567 -0.7472 13 1 5.6405 6.9659 0.2109 14 7 7.1706 6.3145 -1.0729 15 6 5.0521 7.2752 -1.8382 16 6 5.6110 8.6995 -1.8400 17 6 4.9286 9.5056 -2.9150 18 1 4.1717 9.0479 -3.5347 19 6 5.2706 10.8274 -3.1074 20 7 4.6755 11.5307 -4.0459 21 14 6.5793 11.6191 -2.0351 22 1 7.9113 11.4407 -2.6668 23 1 6.2903 13.0684 -1.8902 24 1 6.5766 10.9776 -0.6958 25 6 4.0633 2.5157 -0.0004 26 6 3.4332 1.2840 0.0001 27 9 4.1678 0.1502 -0.0003 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2121 2.3176 -0.0005 32 1 -0.5538 4.0537 -0.8747 33 1 -0.5468 4.0500 0.9053 34 1 -0.7109 5.5850 0.0195 35 1 3.5540 5.6758 0.4775 36 1 7.2944 5.8450 -1.9575 37 1 7.6331 7.2113 -1.0717 38 1 5.2321 6.8131 -2.8089 39 1 3.9801 7.3058 -1.6437 40 1 5.4309 9.1616 -0.8693 41 1 6.6830 8.6690 -2.0346 42 1 4.9158 12.4607 -4.1810 43 1 5.1419 2.5702 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424124555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:14 Heat of formation + Delta-G solvation = -127.611458 kcal Electronic energy + Delta-G solvation = -27702.111798 eV Core-core repulsion = 23469.860111 eV Total energy + Delta-G solvation = -4232.251687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.79272 -41.11759 -39.83533 -39.07490 -36.99427 -35.63150 -34.39466 -32.83229 -30.36754 -30.31864 -29.80275 -28.36948 -27.24539 -26.35691 -24.13445 -22.86998 -22.31240 -20.60334 -20.00879 -19.20308 -18.15993 -17.82752 -17.22582 -16.90531 -16.64418 -16.49142 -15.90085 -15.57001 -15.22508 -15.10636 -15.00402 -14.87586 -14.42442 -14.24314 -14.20829 -13.77637 -13.36313 -13.19531 -13.01124 -12.70747 -12.67918 -12.28186 -12.00083 -11.92526 -11.86448 -11.84237 -11.37478 -11.05121 -11.01000 -10.37295 -10.15021 -9.96096 -9.88733 -9.51357 -9.33324 -8.88277 -8.63611 -8.39108 -7.76593 -6.13060 -4.12692 0.86747 0.93138 2.63965 2.76201 2.82268 3.00100 3.24062 3.32384 3.33278 3.34349 4.06106 4.34670 4.36302 4.48702 4.63767 4.70989 4.73436 4.81327 4.85108 4.97242 5.05807 5.12250 5.18604 5.19839 5.34944 5.38908 5.46735 5.53780 5.61134 5.76048 6.10342 6.19146 6.29151 6.48063 6.62585 6.75732 7.06505 7.07370 7.18803 7.23477 7.45276 7.64276 7.72976 8.19534 8.43132 8.91092 9.48046 11.00174 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.002804 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.642853 B = 9984.033821 C =11081.448286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.116 3.884 4 C -0.255 4.255 5 C 0.134 3.866 6 O -0.306 6.306 7 C 0.027 3.973 8 C 0.120 3.880 9 N -0.663 5.663 10 C 0.526 3.474 11 O -0.518 6.518 12 C 0.075 3.925 13 H 0.101 0.899 14 N -0.830 5.830 15 C -0.130 4.130 16 C -0.010 4.010 17 C -0.524 4.524 18 H 0.071 0.929 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.084 4.084 26 C 0.053 3.947 27 F -0.130 7.130 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.147 0.853 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.417 0.583 36 H 0.349 0.651 37 H 0.353 0.647 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.012 0.988 42 H 0.264 0.736 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -18.976 12.237 24.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.069 3.931 4 C -0.275 4.275 5 C 0.086 3.914 6 O -0.218 6.218 7 C -0.068 4.068 8 C 0.025 3.975 9 N -0.310 5.310 10 C 0.315 3.685 11 O -0.392 6.392 12 C -0.040 4.040 13 H 0.119 0.881 14 N -0.363 5.363 15 C -0.170 4.170 16 C -0.047 4.047 17 C -0.562 4.562 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.539 5.539 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.105 4.105 26 C 0.032 3.968 27 F -0.109 7.109 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.165 0.835 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.254 0.746 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.074 0.926 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.947 -19.888 12.410 25.465 hybrid contribution -0.338 1.353 -0.240 1.415 sum -10.285 -18.534 12.170 24.442 Atomic orbital electron populations 1.23114 0.78104 1.04303 1.01404 1.86167 1.21578 1.25572 1.88652 1.18652 0.90505 0.84985 0.99006 1.20906 1.00627 0.90498 1.15492 1.18503 0.89463 0.85516 0.97905 1.86125 1.19398 1.27931 1.88391 1.23130 0.77967 1.04488 1.01217 1.16609 0.87266 0.86333 1.07306 1.43385 1.24093 1.10712 1.52814 1.21062 0.79515 0.91632 0.76318 1.90642 1.61494 1.41873 1.45212 1.21485 0.90125 0.90767 1.01617 0.88126 1.58735 1.09511 1.27430 1.40589 1.22221 1.00418 0.97547 0.96813 1.19572 0.95968 0.91373 0.97814 1.21060 1.22672 0.95554 1.16880 0.91059 1.25047 0.96173 0.97217 0.95023 1.69913 1.42547 1.09114 1.32354 0.86765 0.82236 0.78588 0.81601 1.20214 1.21342 1.18933 1.20997 1.02371 0.88100 0.99060 1.16571 0.85534 0.82869 1.11812 1.91496 1.76568 1.48294 1.94547 0.92458 0.87869 0.92530 0.83547 0.92486 0.92625 0.87566 0.74582 0.83708 0.83236 0.91945 0.91629 0.96269 0.97010 0.92622 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.31 10.36 -19.80 -0.21 -3.51 16 3 C 0.12 1.36 6.69 -39.19 -0.26 1.10 16 4 C -0.26 -2.55 8.02 -39.32 -0.32 -2.86 16 5 C 0.13 1.55 6.70 -39.10 -0.26 1.29 16 6 O -0.31 -3.24 10.04 -19.78 -0.20 -3.44 16 7 C 0.03 0.18 9.81 101.05 0.99 1.17 16 8 C 0.12 1.60 6.33 -83.43 -0.53 1.07 16 9 N -0.66 -8.73 5.20 -9.71 -0.05 -8.78 16 10 C 0.53 8.18 6.93 -10.98 -0.08 8.10 16 11 O -0.52 -9.34 13.67 5.54 0.08 -9.26 16 12 C 0.08 1.16 3.21 -68.87 -0.22 0.94 16 13 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 14 N -0.83 -12.78 8.94 -5.66 -0.05 -12.84 16 15 C -0.13 -2.39 4.78 -26.73 -0.13 -2.52 16 16 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 17 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 18 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 19 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 20 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 21 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 25 C -0.08 -1.18 8.67 -39.37 -0.34 -1.52 16 26 C 0.05 0.72 7.30 -39.31 -0.29 0.43 16 27 F -0.13 -1.90 17.10 2.25 0.04 -1.86 16 28 H 0.06 0.28 7.66 -51.92 -0.40 -0.12 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.15 1.00 4.52 -52.49 -0.24 0.77 16 32 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 33 H 0.06 0.26 7.67 -51.93 -0.40 -0.13 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.42 4.62 8.56 -40.82 -0.35 4.27 16 36 H 0.35 5.51 8.58 -39.29 -0.34 5.17 16 37 H 0.35 5.24 7.55 -39.29 -0.30 4.94 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 41 H 0.01 0.25 6.29 -51.93 -0.33 -0.08 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.17 2.53 6.19 -52.49 -0.32 2.21 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -33.69 361.23 -5.35 -39.04 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.54 Total: 10.33 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.97 Total: -4.87 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.67 Total: -48.03 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.33 Total: -16.22 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.69 -5.35 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.570 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds