Wall clock time and date at job start Tue Mar 31 2020 14:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36018 * 117.00006 * 2 1 4 4 C 1.38674 * 119.97158 * 359.97418 * 3 2 1 5 5 C 1.38499 * 119.98164 * 179.74729 * 4 3 2 6 6 O 1.36013 * 120.03013 * 180.27893 * 5 4 3 7 7 C 1.42898 * 117.00285 * 0.25104 * 6 5 4 8 8 C 1.39271 * 119.93573 * 0.53119 * 5 4 3 9 9 N 1.40294 * 120.02708 * 179.77296 * 8 5 4 10 10 C 1.34781 * 119.99697 * 214.36346 * 9 8 5 11 11 O 1.21298 * 120.00230 * 355.54060 * 10 9 8 12 12 C 1.50703 * 119.99933 * 175.53825 * 10 9 8 13 13 H 1.09005 * 109.46967 * 40.00074 * 12 10 9 14 14 N 1.46892 * 109.47232 * 160.00120 * 12 10 9 15 15 C 1.52995 * 109.47136 * 280.00373 * 12 10 9 16 16 C 1.53004 * 109.47214 * 175.00054 * 15 12 10 17 17 C 1.50698 * 109.47009 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99702 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99802 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46781 * 90.00245 * 21 19 17 23 23 H 1.48495 * 109.47082 * 210.00066 * 21 19 17 24 24 H 1.48501 * 109.47131 * 330.00106 * 21 19 17 25 25 C 1.38704 * 119.94626 * 359.48712 * 8 5 4 26 26 C 1.38341 * 120.01363 * 0.23806 * 25 8 5 27 27 F 1.35102 * 119.97003 * 179.97438 * 26 25 8 28 28 H 1.09008 * 109.47067 * 60.00296 * 1 2 3 29 29 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47536 * 300.00353 * 1 2 3 31 31 H 1.08002 * 120.00585 * 0.02562 * 4 3 2 32 32 H 1.09004 * 109.47067 * 300.00212 * 7 6 5 33 33 H 1.09004 * 109.47117 * 59.99542 * 7 6 5 34 34 H 1.09002 * 109.47580 * 179.97438 * 7 6 5 35 35 H 0.96994 * 120.00497 * 34.36542 * 9 8 5 36 36 H 1.00909 * 110.99922 * 59.99925 * 14 12 10 37 37 H 1.00897 * 111.00368 * 183.95481 * 14 12 10 38 38 H 1.09002 * 109.47368 * 295.00208 * 15 12 10 39 39 H 1.09000 * 109.47623 * 54.99505 * 15 12 10 40 40 H 1.09003 * 109.46610 * 299.99721 * 16 15 12 41 41 H 1.08995 * 109.47191 * 59.99973 * 16 15 12 42 42 H 0.97002 * 119.99696 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.00029 * 180.25338 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2906 2.3746 -0.0005 5 6 1.9191 3.6087 0.0047 6 8 1.1788 4.7497 0.0100 7 6 -0.2425 4.6008 0.0152 8 6 3.3100 3.6803 -0.0006 9 7 3.9487 4.9295 0.0000 10 6 5.1107 5.0924 -0.6631 11 8 5.6457 4.1410 -1.1922 12 6 5.7453 6.4567 -0.7472 13 1 5.6405 6.9659 0.2109 14 7 7.1706 6.3145 -1.0729 15 6 5.0521 7.2752 -1.8382 16 6 5.6110 8.6995 -1.8400 17 6 4.9286 9.5056 -2.9150 18 1 4.1717 9.0479 -3.5347 19 6 5.2706 10.8274 -3.1074 20 7 4.6755 11.5307 -4.0459 21 14 6.5793 11.6191 -2.0351 22 1 7.9113 11.4407 -2.6668 23 1 6.2903 13.0684 -1.8902 24 1 6.5766 10.9776 -0.6958 25 6 4.0633 2.5157 -0.0004 26 6 3.4332 1.2840 0.0001 27 9 4.1678 0.1502 -0.0003 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2121 2.3176 -0.0005 32 1 -0.5538 4.0537 -0.8747 33 1 -0.5468 4.0500 0.9053 34 1 -0.7109 5.5850 0.0195 35 1 3.5540 5.6758 0.4775 36 1 7.2944 5.8450 -1.9575 37 1 7.6331 7.2113 -1.0717 38 1 5.2321 6.8131 -2.8089 39 1 3.9801 7.3058 -1.6437 40 1 5.4309 9.1616 -0.8693 41 1 6.6830 8.6690 -2.0346 42 1 4.9158 12.4607 -4.1810 43 1 5.1419 2.5702 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424124555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:13 Heat of formation + Delta-G solvation = -153.832831 kcal Electronic energy + Delta-G solvation = -27703.248842 eV Core-core repulsion = 23469.860111 eV Total energy + Delta-G solvation = -4233.388731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.84212 -42.06935 -40.88125 -39.86426 -37.98052 -37.01904 -35.45597 -34.80561 -32.08289 -31.22687 -30.68601 -28.94418 -28.47396 -27.29670 -25.62622 -23.83245 -23.34858 -22.15753 -21.26821 -20.02044 -19.30211 -18.96269 -18.68474 -17.99425 -17.77273 -17.33671 -16.64338 -16.61650 -16.32356 -16.16890 -16.05462 -15.96341 -15.77212 -15.64010 -15.31899 -14.93872 -14.70152 -14.42982 -14.41094 -13.98573 -13.58296 -13.48942 -13.14201 -13.03302 -12.67217 -12.53588 -12.50061 -12.45714 -12.05679 -11.92074 -11.86661 -11.65208 -11.39688 -10.95392 -10.80034 -10.75137 -9.81115 -9.67218 -8.71264 -8.28632 -6.34095 -0.06074 -0.01101 1.40242 1.41372 1.45687 1.52949 1.83021 2.07685 2.17059 2.37635 2.39762 3.07191 3.14398 3.48938 3.60984 3.70242 3.74074 4.07421 4.10265 4.18272 4.24898 4.35365 4.36733 4.40682 4.43973 4.51727 4.58566 4.69664 4.70459 4.73511 4.80224 4.87368 4.95288 5.19465 5.37466 5.47722 5.49867 5.63882 6.01408 6.04053 6.26483 6.28614 6.35803 6.49221 6.74533 7.05943 7.30645 8.88235 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018617 B = 0.002804 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.642853 B = 9984.033821 C =11081.448286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.124 3.876 4 C -0.244 4.244 5 C 0.144 3.856 6 O -0.320 6.320 7 C 0.013 3.987 8 C 0.095 3.905 9 N -0.651 5.651 10 C 0.525 3.475 11 O -0.549 6.549 12 C 0.086 3.914 13 H 0.127 0.873 14 N -0.829 5.829 15 C -0.119 4.119 16 C -0.005 4.005 17 C -0.534 4.534 18 H 0.025 0.975 19 C 0.002 3.998 20 N -0.954 5.954 21 Si 0.954 3.046 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.234 1.234 25 C -0.091 4.091 26 C 0.024 3.976 27 F -0.144 7.144 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.183 0.817 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.427 0.573 36 H 0.346 0.654 37 H 0.357 0.643 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 -19.175 14.453 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.076 3.924 4 C -0.263 4.263 5 C 0.095 3.905 6 O -0.233 6.233 7 C -0.081 4.081 8 C 0.000 4.000 9 N -0.298 5.298 10 C 0.313 3.687 11 O -0.425 6.425 12 C -0.029 4.029 13 H 0.144 0.856 14 N -0.361 5.361 15 C -0.159 4.159 16 C -0.043 4.043 17 C -0.572 4.572 18 H 0.044 0.956 19 C -0.195 4.195 20 N -0.594 5.594 21 Si 0.777 3.223 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.157 1.157 25 C -0.112 4.112 26 C 0.003 3.997 27 F -0.122 7.122 28 H 0.089 0.911 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.200 0.800 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.266 0.734 36 H 0.159 0.841 37 H 0.173 0.827 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.005 -20.107 14.657 27.207 hybrid contribution -0.251 1.335 -0.993 1.682 sum -11.256 -18.772 13.664 25.803 Atomic orbital electron populations 1.23521 0.75418 1.06283 1.02944 1.86161 1.24374 1.25128 1.88255 1.18700 0.89915 0.86082 0.97680 1.21191 1.02196 0.89058 1.13874 1.18524 0.88916 0.86470 0.96591 1.86121 1.21549 1.27639 1.88000 1.23498 0.75658 1.06043 1.02879 1.16727 0.88288 0.85865 1.09085 1.43208 1.23279 1.11197 1.52100 1.21059 0.80026 0.91289 0.76292 1.90639 1.62478 1.42725 1.46665 1.21397 0.89653 0.90430 1.01438 0.85565 1.58751 1.09382 1.27606 1.40411 1.22026 1.00616 0.96062 0.97152 1.19503 0.96124 0.92385 0.96283 1.21441 1.21858 0.96279 1.17612 0.95620 1.26089 0.98887 0.97943 0.96584 1.70086 1.44914 1.09643 1.34803 0.85604 0.78698 0.77256 0.80752 1.19394 1.21509 1.15725 1.20821 1.01628 0.88877 0.99888 1.16784 0.86653 0.82370 1.13862 1.91448 1.77077 1.48860 1.94862 0.91144 0.85931 0.90593 0.79969 0.91378 0.90297 0.86327 0.73378 0.84070 0.82703 0.93985 0.91687 0.94733 0.95710 0.92553 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.33 -6.48 10.36 -93.75 -0.97 -7.45 16 3 C 0.12 2.77 6.69 22.52 0.15 2.92 16 4 C -0.24 -4.26 8.02 22.44 0.18 -4.08 16 5 C 0.14 3.07 6.70 22.58 0.15 3.22 16 6 O -0.32 -6.05 10.04 -93.69 -0.94 -6.99 16 7 C 0.01 0.13 9.81 113.37 1.11 1.24 16 8 C 0.10 2.50 6.33 38.15 0.24 2.75 16 9 N -0.65 -16.70 5.20 -303.02 -1.58 -18.28 16 10 C 0.53 16.14 6.93 87.66 0.61 16.74 16 11 O -0.55 -20.16 13.67 -3.08 -0.04 -20.20 16 12 C 0.09 2.52 3.21 44.17 0.14 2.66 16 13 H 0.13 3.08 8.14 -2.38 -0.02 3.06 16 14 N -0.83 -24.38 8.94 -171.81 -1.54 -25.92 16 15 C -0.12 -4.28 4.78 30.59 0.15 -4.14 16 16 C -0.01 -0.23 3.81 29.85 0.11 -0.12 16 17 C -0.53 -29.66 9.66 25.60 0.25 -29.41 16 18 H 0.03 1.60 7.99 -2.91 -0.02 1.58 16 19 C 0.00 0.09 5.47 84.66 0.46 0.55 16 20 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 21 Si 0.95 42.04 27.47 68.60 1.88 43.93 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.23 -9.12 6.54 99.48 0.65 -8.47 16 25 C -0.09 -2.62 8.67 22.41 0.19 -2.43 16 26 C 0.02 0.66 7.30 22.45 0.16 0.83 16 27 F -0.14 -4.37 17.10 44.97 0.77 -3.60 16 28 H 0.07 0.44 7.66 -2.38 -0.02 0.42 16 29 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.38 7.66 -2.39 -0.02 0.36 16 31 H 0.18 1.72 4.52 -2.91 -0.01 1.71 16 32 H 0.07 0.53 7.65 -2.38 -0.02 0.51 16 33 H 0.08 0.42 7.67 -2.38 -0.02 0.40 16 34 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.43 8.86 8.56 -92.71 -0.79 8.07 16 36 H 0.35 10.75 8.58 -89.69 -0.77 9.98 16 37 H 0.36 9.80 7.55 -89.70 -0.68 9.12 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 41 H 0.02 0.99 6.29 -2.39 -0.02 0.98 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.15 4.78 6.19 -2.91 -0.02 4.77 16 Total: -1.00 -76.02 361.23 1.71 -74.31 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -1.20 Total: 30.97 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 5.03 Total: -8.06 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -2.81 Total: -102.91 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.95 Total: -34.63 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.77 Total: -3.60 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.93 kcal Total: -76.02 1.71 -74.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.527 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds