Wall clock time and date at job start Tue Mar 31 2020 14:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36013 * 117.00349 * 2 1 4 4 C 1.38674 * 119.97289 * 0.02562 * 3 2 1 5 5 C 1.38496 * 119.98508 * 180.02562 * 4 3 2 6 6 O 1.36013 * 120.03028 * 180.02562 * 5 4 3 7 7 C 1.42901 * 117.00164 * 359.97438 * 6 5 4 8 8 C 1.39278 * 119.93167 * 359.97438 * 5 4 3 9 9 N 1.40299 * 120.02070 * 179.72509 * 8 5 4 10 10 C 1.34776 * 119.99567 * 145.61404 * 9 8 5 11 11 O 1.21303 * 120.00390 * 4.46155 * 10 9 8 12 12 C 1.50702 * 119.99841 * 184.46533 * 10 9 8 13 13 H 1.08996 * 109.46879 * 319.99834 * 12 10 9 14 14 N 1.46900 * 109.47141 * 199.99916 * 12 10 9 15 15 C 1.53001 * 109.47114 * 79.99940 * 12 10 9 16 16 C 1.53003 * 109.47140 * 185.00165 * 15 12 10 17 17 C 1.50701 * 109.47016 * 180.02562 * 16 15 12 18 18 H 1.07992 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99603 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00357 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99828 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47165 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47534 * 119.99599 * 21 19 17 24 24 H 1.48500 * 109.47032 * 239.99716 * 21 19 17 25 25 C 1.38699 * 119.94826 * 359.97438 * 8 5 4 26 26 C 1.38343 * 120.01414 * 359.97438 * 25 8 5 27 27 F 1.35095 * 119.96416 * 180.02562 * 26 25 8 28 28 H 1.08992 * 109.47501 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47357 * 300.00389 * 1 2 3 30 30 H 1.09007 * 109.47195 * 59.99636 * 1 2 3 31 31 H 1.08000 * 120.00453 * 0.04012 * 4 3 2 32 32 H 1.08998 * 109.46907 * 59.99763 * 7 6 5 33 33 H 1.09002 * 109.46727 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47012 * 299.99675 * 7 6 5 35 35 H 0.96994 * 120.00208 * 325.60938 * 9 8 5 36 36 H 1.00903 * 111.00098 * 176.04586 * 14 12 10 37 37 H 1.00905 * 111.00120 * 300.00310 * 14 12 10 38 38 H 1.09001 * 109.46750 * 305.00099 * 15 12 10 39 39 H 1.08999 * 109.47158 * 65.00308 * 15 12 10 40 40 H 1.09004 * 109.46641 * 300.00053 * 16 15 12 41 41 H 1.08994 * 109.47299 * 59.99686 * 16 15 12 42 42 H 0.96995 * 119.99726 * 180.02562 * 20 19 17 43 43 H 1.08000 * 119.99065 * 179.97438 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2908 2.3746 0.0005 5 6 1.9193 3.6087 0.0000 6 8 1.1790 4.7496 0.0011 7 6 -0.2423 4.6008 0.0021 8 6 3.3103 3.6801 -0.0005 9 7 3.9490 4.9293 -0.0069 10 6 5.1135 5.0940 0.6513 11 8 5.6505 4.1440 1.1810 12 6 5.7484 6.4585 0.7294 13 1 5.6400 6.9650 -0.2296 14 7 7.1750 6.3172 1.0501 15 6 5.0593 7.2800 1.8208 16 6 5.6181 8.7043 1.8166 17 6 4.9397 9.5132 2.8920 18 1 4.1859 9.0570 3.5163 19 6 5.2817 10.8358 3.0788 20 7 6.2002 11.3912 2.3189 21 14 4.4414 11.8383 4.4123 22 1 3.4538 10.9872 5.1233 23 1 5.4579 12.3292 5.3773 24 1 3.7442 12.9957 3.7962 25 6 4.0634 2.5154 0.0000 26 6 3.4333 1.2838 0.0016 27 9 4.1678 0.1501 0.0027 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.2123 2.3177 0.0016 32 1 -0.5494 4.0516 0.8921 33 1 -0.7106 5.5851 0.0034 34 1 -0.5508 4.0524 -0.8879 35 1 3.5525 5.6742 -0.4851 36 1 7.6374 7.2140 1.0448 37 1 7.3020 5.8500 1.9354 38 1 3.9865 7.3100 1.6301 39 1 5.2430 6.8205 2.7920 40 1 6.6909 8.6742 2.0072 41 1 5.4344 9.1638 0.8455 42 1 6.4409 12.3215 2.4506 43 1 5.1420 2.5700 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424124561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:17 Heat of formation + Delta-G solvation = -131.562689 kcal Electronic energy + Delta-G solvation = -27655.257371 eV Core-core repulsion = 23422.834346 eV Total energy + Delta-G solvation = -4232.423026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.77579 -41.08781 -39.78130 -39.05602 -36.94786 -35.48921 -34.34606 -32.87623 -30.30875 -29.93941 -29.74271 -28.36004 -27.08912 -26.17283 -24.15377 -22.87585 -22.34247 -20.75127 -19.92412 -19.18506 -18.11328 -17.78708 -17.16768 -16.82796 -16.51175 -16.21750 -15.89019 -15.51393 -15.20567 -15.09411 -14.98291 -14.80415 -14.46166 -14.26056 -14.14563 -13.70549 -13.24556 -13.14755 -13.00688 -12.70234 -12.31388 -12.16523 -11.93258 -11.85389 -11.83200 -11.74499 -11.12498 -11.02216 -10.95788 -10.67749 -10.03878 -9.97996 -9.88631 -9.34433 -9.23572 -8.85808 -8.45923 -8.24800 -7.73987 -6.10225 -4.13132 0.88871 0.95282 2.70354 2.78631 2.83811 3.04650 3.24970 3.33107 3.36680 3.37435 4.08084 4.36486 4.38086 4.50143 4.65927 4.73755 4.76277 4.81438 4.85657 5.06166 5.12092 5.16079 5.19755 5.26189 5.38403 5.48659 5.51901 5.62905 5.70026 5.78941 6.21463 6.26833 6.48796 6.51744 6.77332 6.84715 7.09468 7.32395 7.49233 7.54020 7.61510 7.85685 7.87542 8.25700 8.30138 8.93050 9.51907 11.00750 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.002781 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.509724 B =10066.933300 C =11267.371305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.115 3.885 4 C -0.255 4.255 5 C 0.133 3.867 6 O -0.306 6.306 7 C 0.027 3.973 8 C 0.122 3.878 9 N -0.664 5.664 10 C 0.526 3.474 11 O -0.520 6.520 12 C 0.078 3.922 13 H 0.101 0.899 14 N -0.830 5.830 15 C -0.138 4.138 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.085 4.085 26 C 0.053 3.947 27 F -0.130 7.130 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.147 0.853 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.417 0.583 36 H 0.356 0.644 37 H 0.347 0.653 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.886 -18.405 -8.263 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.067 3.933 4 C -0.275 4.275 5 C 0.085 3.915 6 O -0.218 6.218 7 C -0.068 4.068 8 C 0.026 3.974 9 N -0.311 5.311 10 C 0.314 3.686 11 O -0.394 6.394 12 C -0.037 4.037 13 H 0.118 0.882 14 N -0.363 5.363 15 C -0.178 4.178 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.106 4.106 26 C 0.033 3.967 27 F -0.109 7.109 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.172 0.828 37 H 0.160 0.840 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.145 -19.329 -8.549 24.890 hybrid contribution -1.388 1.447 1.370 2.429 sum -14.533 -17.882 -7.179 24.135 Atomic orbital electron populations 1.23109 0.78144 1.04275 1.01379 1.86165 1.21542 1.25592 1.88685 1.18644 0.90501 0.84969 0.99139 1.20896 1.00588 0.90509 1.15530 1.18507 0.89480 0.85486 0.98032 1.86128 1.19337 1.27950 1.88430 1.23121 0.78040 1.04428 1.01201 1.16630 0.87263 0.86407 1.07081 1.43418 1.23947 1.10719 1.52981 1.21184 0.79440 0.91772 0.76168 1.90633 1.61536 1.42056 1.45188 1.21452 0.90189 0.90342 1.01710 0.88161 1.58749 1.09321 1.27932 1.40284 1.22401 1.00091 0.98922 0.96357 1.19108 0.96272 0.88329 0.97559 1.21210 1.21979 0.95642 1.17260 0.92655 1.25011 0.95137 0.97922 0.96265 1.69956 1.31104 1.13095 1.39044 0.86532 0.79490 0.80132 0.81838 1.19760 1.20942 1.20952 1.21016 1.02426 0.88087 0.99055 1.16573 0.85526 0.82872 1.11768 1.91493 1.76572 1.48301 1.94542 0.87889 0.92501 0.92537 0.83590 0.92546 0.87621 0.92613 0.74575 0.82784 0.84016 0.92289 0.92573 0.96356 0.96239 0.92924 0.81383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.35 10.36 -19.78 -0.20 -3.55 16 3 C 0.11 1.37 6.69 -39.19 -0.26 1.11 16 4 C -0.26 -2.58 8.02 -39.33 -0.32 -2.90 16 5 C 0.13 1.56 6.70 -39.10 -0.26 1.30 16 6 O -0.31 -3.28 10.05 -19.78 -0.20 -3.48 16 7 C 0.03 0.18 9.81 101.05 0.99 1.17 16 8 C 0.12 1.66 6.33 -83.42 -0.53 1.13 16 9 N -0.66 -9.07 5.20 -9.71 -0.05 -9.12 16 10 C 0.53 8.52 6.93 -10.98 -0.08 8.45 16 11 O -0.52 -9.68 13.67 5.54 0.08 -9.60 16 12 C 0.08 1.29 3.21 -68.86 -0.22 1.06 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 14 N -0.83 -13.81 8.94 -5.65 -0.05 -13.86 16 15 C -0.14 -2.66 4.78 -26.73 -0.13 -2.78 16 16 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 17 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C -0.08 -1.21 8.68 -39.37 -0.34 -1.55 16 26 C 0.05 0.74 7.30 -39.31 -0.29 0.45 16 27 F -0.13 -1.93 17.10 2.25 0.04 -1.89 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.15 1.01 4.52 -52.49 -0.24 0.78 16 32 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 35 H 0.42 4.86 8.56 -40.82 -0.35 4.52 16 36 H 0.36 5.95 7.55 -39.29 -0.30 5.65 16 37 H 0.35 5.85 8.58 -39.29 -0.34 5.51 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.17 2.61 6.18 -52.49 -0.32 2.28 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -32.74 364.82 -5.73 -38.47 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.57 Total: 10.46 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.98 Total: -3.96 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.64 Total: -48.04 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.33 Total: -16.63 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.74 -5.73 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.091 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds