Wall clock time and date at job start Tue Mar 31 2020 14:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36013 * 117.00349 * 2 1 4 4 C 1.38674 * 119.97289 * 0.02562 * 3 2 1 5 5 C 1.38496 * 119.98508 * 180.02562 * 4 3 2 6 6 O 1.36013 * 120.03028 * 180.02562 * 5 4 3 7 7 C 1.42901 * 117.00164 * 359.97438 * 6 5 4 8 8 C 1.39278 * 119.93167 * 359.97438 * 5 4 3 9 9 N 1.40299 * 120.02070 * 179.72509 * 8 5 4 10 10 C 1.34776 * 119.99567 * 145.61404 * 9 8 5 11 11 O 1.21303 * 120.00390 * 4.46155 * 10 9 8 12 12 C 1.50702 * 119.99841 * 184.46533 * 10 9 8 13 13 H 1.08996 * 109.46879 * 319.99834 * 12 10 9 14 14 N 1.46900 * 109.47141 * 199.99916 * 12 10 9 15 15 C 1.53001 * 109.47114 * 79.99940 * 12 10 9 16 16 C 1.53003 * 109.47140 * 185.00165 * 15 12 10 17 17 C 1.50701 * 109.47016 * 180.02562 * 16 15 12 18 18 H 1.07992 * 120.00042 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99603 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00357 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99828 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47165 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47534 * 119.99599 * 21 19 17 24 24 H 1.48500 * 109.47032 * 239.99716 * 21 19 17 25 25 C 1.38699 * 119.94826 * 359.97438 * 8 5 4 26 26 C 1.38343 * 120.01414 * 359.97438 * 25 8 5 27 27 F 1.35095 * 119.96416 * 180.02562 * 26 25 8 28 28 H 1.08992 * 109.47501 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47357 * 300.00389 * 1 2 3 30 30 H 1.09007 * 109.47195 * 59.99636 * 1 2 3 31 31 H 1.08000 * 120.00453 * 0.04012 * 4 3 2 32 32 H 1.08998 * 109.46907 * 59.99763 * 7 6 5 33 33 H 1.09002 * 109.46727 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47012 * 299.99675 * 7 6 5 35 35 H 0.96994 * 120.00208 * 325.60938 * 9 8 5 36 36 H 1.00903 * 111.00098 * 176.04586 * 14 12 10 37 37 H 1.00905 * 111.00120 * 300.00310 * 14 12 10 38 38 H 1.09001 * 109.46750 * 305.00099 * 15 12 10 39 39 H 1.08999 * 109.47158 * 65.00308 * 15 12 10 40 40 H 1.09004 * 109.46641 * 300.00053 * 16 15 12 41 41 H 1.08994 * 109.47299 * 59.99686 * 16 15 12 42 42 H 0.96995 * 119.99726 * 180.02562 * 20 19 17 43 43 H 1.08000 * 119.99065 * 179.97438 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2908 2.3746 0.0005 5 6 1.9193 3.6087 0.0000 6 8 1.1790 4.7496 0.0011 7 6 -0.2423 4.6008 0.0021 8 6 3.3103 3.6801 -0.0005 9 7 3.9490 4.9293 -0.0069 10 6 5.1135 5.0940 0.6513 11 8 5.6505 4.1440 1.1810 12 6 5.7484 6.4585 0.7294 13 1 5.6400 6.9650 -0.2296 14 7 7.1750 6.3172 1.0501 15 6 5.0593 7.2800 1.8208 16 6 5.6181 8.7043 1.8166 17 6 4.9397 9.5132 2.8920 18 1 4.1859 9.0570 3.5163 19 6 5.2817 10.8358 3.0788 20 7 6.2002 11.3912 2.3189 21 14 4.4414 11.8383 4.4123 22 1 3.4538 10.9872 5.1233 23 1 5.4579 12.3292 5.3773 24 1 3.7442 12.9957 3.7962 25 6 4.0634 2.5154 0.0000 26 6 3.4333 1.2838 0.0016 27 9 4.1678 0.1501 0.0027 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.2123 2.3177 0.0016 32 1 -0.5494 4.0516 0.8921 33 1 -0.7106 5.5851 0.0034 34 1 -0.5508 4.0524 -0.8879 35 1 3.5525 5.6742 -0.4851 36 1 7.6374 7.2140 1.0448 37 1 7.3020 5.8500 1.9354 38 1 3.9865 7.3100 1.6301 39 1 5.2430 6.8205 2.7920 40 1 6.6909 8.6742 2.0072 41 1 5.4344 9.1638 0.8455 42 1 6.4409 12.3215 2.4506 43 1 5.1420 2.5700 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424124561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:16 Heat of formation + Delta-G solvation = -155.860905 kcal Electronic energy + Delta-G solvation = -27656.311021 eV Core-core repulsion = 23422.834346 eV Total energy + Delta-G solvation = -4233.476675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.84040 -42.06563 -40.87439 -39.85764 -37.96011 -36.97417 -35.45081 -34.83543 -31.68801 -31.22190 -30.66624 -28.93098 -28.28035 -27.25288 -25.75901 -23.87873 -23.39530 -22.30905 -21.24232 -20.01237 -19.21265 -18.91768 -18.42292 -17.92893 -17.75547 -17.32886 -16.66095 -16.62882 -16.46679 -16.16724 -16.04221 -15.93028 -15.76304 -15.60761 -15.29594 -14.83327 -14.72398 -14.39939 -14.08564 -13.95331 -13.49364 -13.44614 -13.11514 -12.94742 -12.70148 -12.53728 -12.50519 -12.47192 -12.44835 -11.89664 -11.79724 -11.69297 -11.27683 -10.93830 -10.76102 -10.55401 -9.80696 -9.66044 -8.70924 -8.20702 -6.30588 -0.05759 -0.00647 1.39151 1.40747 1.46019 1.52833 1.83018 2.08158 2.17629 2.39575 2.41049 3.13165 3.14875 3.49526 3.62191 3.72533 3.74859 4.10598 4.11781 4.22949 4.25818 4.36282 4.37498 4.41766 4.44761 4.52487 4.66511 4.70158 4.72472 4.79404 4.83902 4.88562 5.08959 5.19986 5.48226 5.49779 5.67008 5.81964 6.02076 6.04782 6.22504 6.29416 6.35653 6.47543 6.84994 7.05721 7.38468 8.90271 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.002781 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.509724 B =10066.933300 C =11267.371305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.326 6.326 3 C 0.124 3.876 4 C -0.243 4.243 5 C 0.145 3.855 6 O -0.320 6.320 7 C 0.013 3.987 8 C 0.095 3.905 9 N -0.651 5.651 10 C 0.527 3.473 11 O -0.548 6.548 12 C 0.086 3.914 13 H 0.116 0.884 14 N -0.829 5.829 15 C -0.121 4.121 16 C 0.030 3.970 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.277 1.277 25 C -0.092 4.092 26 C 0.024 3.976 27 F -0.144 7.144 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.427 0.573 36 H 0.355 0.645 37 H 0.345 0.655 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.004 0.996 41 H 0.005 0.995 42 H 0.264 0.736 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.028 -18.650 -8.264 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.077 3.923 4 C -0.262 4.262 5 C 0.096 3.904 6 O -0.233 6.233 7 C -0.081 4.081 8 C 0.000 4.000 9 N -0.298 5.298 10 C 0.316 3.684 11 O -0.425 6.425 12 C -0.029 4.029 13 H 0.134 0.866 14 N -0.361 5.361 15 C -0.160 4.160 16 C -0.007 4.007 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.783 3.217 22 H -0.190 1.190 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.113 4.113 26 C 0.004 3.996 27 F -0.123 7.123 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.201 0.799 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.266 0.734 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.073 0.927 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.336 -19.583 -8.571 26.904 hybrid contribution -0.555 1.468 1.333 2.059 sum -16.891 -18.115 -7.238 25.804 Atomic orbital electron populations 1.23524 0.75398 1.06286 1.02970 1.86161 1.24394 1.25112 1.88251 1.18687 0.89859 0.86108 0.97664 1.21187 1.02202 0.88991 1.13848 1.18507 0.88829 0.86503 0.96563 1.86126 1.21577 1.27603 1.87995 1.23505 0.75621 1.06071 1.02898 1.16740 0.88361 0.85752 1.09106 1.43203 1.23045 1.11320 1.52187 1.21003 0.80046 0.91093 0.76278 1.90630 1.62490 1.42724 1.46640 1.21366 0.89712 0.90493 1.01356 0.86602 1.58760 1.09456 1.27715 1.40159 1.22136 1.00488 0.96514 0.96898 1.18971 0.95347 0.90549 0.95819 1.21637 1.22090 0.96381 1.17967 0.92793 1.25850 0.95789 0.99190 0.98483 1.70063 1.32415 1.13538 1.40642 0.85500 0.78532 0.78595 0.79038 1.19001 1.20659 1.20231 1.20824 1.01614 0.88950 0.99942 1.16774 0.86690 0.82314 1.13868 1.91445 1.77098 1.48854 1.94862 0.85946 0.91064 0.90609 0.79870 0.91265 0.86272 0.90379 0.73440 0.82933 0.84211 0.91527 0.93715 0.97804 0.97711 0.92744 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -6.47 10.36 -93.70 -0.97 -7.44 16 3 C 0.12 2.79 6.69 22.52 0.15 2.94 16 4 C -0.24 -4.22 8.02 22.44 0.18 -4.04 16 5 C 0.14 3.11 6.70 22.58 0.15 3.26 16 6 O -0.32 -6.01 10.05 -93.70 -0.94 -6.95 16 7 C 0.01 0.12 9.81 113.37 1.11 1.23 16 8 C 0.10 2.57 6.33 38.15 0.24 2.81 16 9 N -0.65 -17.57 5.20 -303.02 -1.57 -19.14 16 10 C 0.53 17.22 6.93 87.66 0.61 17.83 16 11 O -0.55 -20.98 13.67 -3.10 -0.04 -21.02 16 12 C 0.09 2.83 3.21 44.17 0.14 2.97 16 13 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 14 N -0.83 -28.00 8.94 -171.80 -1.54 -29.54 16 15 C -0.12 -4.64 4.78 30.60 0.15 -4.49 16 16 C 0.03 1.46 4.74 29.85 0.14 1.60 16 17 C -0.54 -29.53 9.11 25.60 0.23 -29.29 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 19 C 0.01 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 21 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.09 -2.72 8.68 22.40 0.19 -2.53 16 26 C 0.02 0.68 7.30 22.44 0.16 0.84 16 27 F -0.14 -4.43 17.10 44.97 0.77 -3.66 16 28 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 30 H 0.08 0.37 7.66 -2.38 -0.02 0.35 16 31 H 0.18 1.68 4.52 -2.91 -0.01 1.66 16 32 H 0.07 0.48 7.66 -2.39 -0.02 0.47 16 33 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.39 7.66 -2.39 -0.02 0.38 16 35 H 0.43 9.56 8.56 -92.71 -0.79 8.76 16 36 H 0.36 12.10 7.55 -89.69 -0.68 11.43 16 37 H 0.34 11.92 8.58 -89.69 -0.77 11.15 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 40 H 0.00 0.19 6.87 -2.38 -0.02 0.17 16 41 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.15 4.90 6.18 -2.91 -0.02 4.88 16 Total: -1.00 -71.59 364.82 1.90 -69.69 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -1.15 Total: 31.50 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.04 Total: -4.91 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -2.82 Total: -102.27 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.95 Total: -35.41 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.77 Total: -3.66 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.59 1.90 -69.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.176 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds