Wall clock time and date at job start Tue Mar 31 2020 14:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36060 * 116.99848 * 2 1 4 4 C 1.38597 * 119.99295 * 359.97438 * 3 2 1 5 5 C 1.38325 * 120.04428 * 179.69958 * 4 3 2 6 6 F 1.35096 * 119.98284 * 180.32496 * 5 4 3 7 7 C 1.39019 * 120.03116 * 0.60543 * 5 4 3 8 8 N 1.40212 * 120.00303 * 179.70159 * 7 5 4 9 9 C 1.34777 * 119.99621 * 214.37134 * 8 7 5 10 10 O 1.21304 * 120.00133 * 355.53705 * 9 8 7 11 11 C 1.50702 * 120.00052 * 175.53527 * 9 8 7 12 12 H 1.09007 * 109.46928 * 39.99977 * 11 9 8 13 13 N 1.46900 * 109.47240 * 160.00009 * 11 9 8 14 14 C 1.52995 * 109.47199 * 279.99981 * 11 9 8 15 15 C 1.52999 * 109.47009 * 174.99649 * 14 11 9 16 16 C 1.50703 * 109.47510 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99219 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00353 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00141 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46943 * 59.99921 * 20 18 16 22 22 H 1.48496 * 109.47565 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47350 * 300.00352 * 20 18 16 24 24 C 1.38771 * 119.98943 * 359.42129 * 7 5 4 25 25 C 1.38511 * 119.95851 * 0.27543 * 24 7 5 26 26 O 1.36033 * 120.02222 * 180.02562 * 25 24 7 27 27 C 1.42901 * 117.00008 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47476 * 299.99402 * 1 2 3 30 30 H 1.08995 * 109.47892 * 60.00392 * 1 2 3 31 31 H 1.08000 * 119.97788 * 0.02562 * 4 3 2 32 32 H 0.96994 * 120.00515 * 34.36501 * 8 7 5 33 33 H 1.00898 * 111.00422 * 59.99987 * 13 11 9 34 34 H 1.00896 * 111.00103 * 183.96227 * 13 11 9 35 35 H 1.09003 * 109.47130 * 55.00318 * 14 11 9 36 36 H 1.09000 * 109.47282 * 294.99612 * 14 11 9 37 37 H 1.09004 * 109.47345 * 60.00155 * 15 14 11 38 38 H 1.08997 * 109.47771 * 300.00268 * 15 14 11 39 39 H 0.97004 * 120.00352 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.02429 * 180.30178 * 24 7 5 41 41 H 1.08999 * 109.47757 * 179.97438 * 27 26 25 42 42 H 1.09001 * 109.46805 * 300.00181 * 27 26 25 43 43 H 1.09008 * 109.46714 * 59.99626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2916 2.3746 -0.0005 5 6 1.9184 3.6076 0.0057 6 9 1.1812 4.7397 0.0118 7 6 3.3066 3.6825 -0.0001 8 7 3.9413 4.9327 -0.0001 9 6 5.1025 5.0988 -0.6637 10 8 5.6400 4.1488 -1.1929 11 6 5.7333 6.4649 -0.7485 12 1 5.6275 6.9740 0.2096 13 7 7.1589 6.3267 -1.0748 14 6 5.0372 7.2812 -1.8393 15 6 5.5920 8.7071 -1.8415 16 6 4.9061 9.5115 -2.9155 17 1 4.1503 9.0514 -3.5349 18 6 5.2440 10.8342 -3.1082 19 7 6.1647 11.3942 -2.3543 20 14 4.3942 11.8310 -4.4400 21 1 2.9336 11.8689 -4.1739 22 1 4.9325 13.2149 -4.4421 23 1 4.6402 11.2016 -5.7623 24 6 4.0639 2.5197 -0.0001 25 6 3.4358 1.2851 -0.0001 26 8 4.1770 0.1444 0.0004 27 6 5.5981 0.2941 0.0015 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5137 -0.8899 31 1 0.2131 2.3175 -0.0005 32 1 3.5447 5.6780 0.4774 33 1 7.2836 5.8574 -1.9592 34 1 7.6187 7.2248 -1.0739 35 1 3.9652 7.3089 -1.6442 36 1 5.2182 6.8195 -2.8099 37 1 6.6641 8.6796 -2.0366 38 1 5.4112 9.1689 -0.8709 39 1 6.4022 12.3249 -2.4895 40 1 5.1425 2.5772 0.0002 41 1 6.0672 -0.6898 0.0022 42 1 5.9062 0.8432 -0.8883 43 1 5.9049 0.8433 0.8917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424147101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:44 Heat of formation + Delta-G solvation = -131.753080 kcal Electronic energy + Delta-G solvation = -27663.351217 eV Core-core repulsion = 23430.919936 eV Total energy + Delta-G solvation = -4232.431281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.00446 -40.99812 -39.92599 -38.65135 -37.12091 -35.57104 -34.34995 -32.90746 -30.31005 -29.99003 -29.84744 -27.56839 -27.39494 -26.32672 -24.17041 -22.83522 -22.32712 -20.82132 -20.00538 -19.03480 -18.17286 -17.87434 -17.07613 -16.79587 -16.43333 -16.26556 -15.79512 -15.57593 -15.45798 -15.03492 -14.89124 -14.73429 -14.49211 -14.38493 -14.28411 -13.60719 -13.18748 -13.15394 -12.91078 -12.70999 -12.34394 -12.23451 -11.90497 -11.80835 -11.65082 -11.47539 -11.28150 -11.13718 -10.95410 -10.73285 -10.06343 -10.01342 -9.92182 -9.40820 -9.29274 -8.79085 -8.47291 -8.32319 -7.74783 -6.11678 -4.15014 0.88546 0.93463 2.61608 2.82339 2.99860 3.05472 3.27072 3.31849 3.33864 3.34755 4.00590 4.36933 4.39893 4.63582 4.74830 4.86576 4.87348 4.91904 5.01854 5.06182 5.10120 5.18857 5.24530 5.29918 5.42068 5.43103 5.46301 5.62883 5.73104 5.89124 6.09637 6.20178 6.42934 6.55246 6.74352 6.79717 7.18851 7.27857 7.43149 7.46567 7.56949 7.78500 7.85055 8.12801 8.27187 8.90509 9.50183 10.99173 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.002720 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.449181 B =10290.866434 C =11422.409241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.107 3.893 4 C -0.190 4.190 5 C 0.073 3.927 6 F -0.132 7.132 7 C 0.131 3.869 8 N -0.671 5.671 9 C 0.529 3.471 10 O -0.518 6.518 11 C 0.078 3.922 12 H 0.101 0.899 13 N -0.830 5.830 14 C -0.139 4.139 15 C 0.026 3.974 16 C -0.526 4.526 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.152 4.152 25 C 0.111 3.889 26 O -0.303 6.303 27 C 0.024 3.976 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.151 0.849 32 H 0.417 0.583 33 H 0.346 0.654 34 H 0.357 0.643 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.263 0.737 40 H 0.166 0.834 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.854 -21.238 8.265 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.061 3.939 4 C -0.210 4.210 5 C 0.051 3.949 6 F -0.110 7.110 7 C 0.035 3.965 8 N -0.317 5.317 9 C 0.318 3.682 10 O -0.392 6.392 11 C -0.037 4.037 12 H 0.119 0.881 13 N -0.363 5.363 14 C -0.179 4.179 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.173 4.173 25 C 0.064 3.936 26 O -0.216 6.216 27 C -0.071 4.071 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.253 0.747 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.184 0.816 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.253 -22.474 8.553 25.117 hybrid contribution -1.185 2.246 -1.357 2.879 sum -8.438 -20.229 7.196 23.069 Atomic orbital electron populations 1.23111 0.78473 1.04142 1.01427 1.86212 1.21075 1.25163 1.89005 1.17827 0.88832 0.84784 1.02471 1.20741 1.00914 0.89759 1.09621 1.16987 0.87100 0.82404 1.08418 1.91506 1.76552 1.48702 1.94267 1.17365 0.89105 0.86597 1.03450 1.43533 1.24578 1.10661 1.52976 1.21202 0.79186 0.91874 0.75976 1.90609 1.61287 1.42187 1.45165 1.21469 0.90276 0.90191 1.01808 0.88073 1.58752 1.09443 1.27834 1.40229 1.22414 1.00034 0.99075 0.96331 1.19094 0.96267 0.88194 0.97598 1.21132 1.21920 0.95723 1.17611 0.92737 1.25001 0.95099 0.97867 0.96271 1.69931 1.30982 1.13109 1.39173 0.86634 0.79882 0.79127 0.82255 1.20173 1.21187 1.20205 1.21154 1.02182 0.88746 1.05238 1.18043 0.88035 0.86083 1.01448 1.86161 1.19148 1.27492 1.88792 1.23144 0.78002 1.03893 1.02092 0.88045 0.92559 0.92529 0.83172 0.74655 0.84026 0.82673 0.92331 0.92490 0.96344 0.96239 0.92778 0.81639 0.88083 0.91860 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.35 10.28 -34.58 -0.36 -3.71 16 3 C 0.11 1.29 6.70 -39.12 -0.26 1.03 16 4 C -0.19 -2.09 9.01 -39.42 -0.36 -2.44 16 5 C 0.07 0.92 7.30 -39.26 -0.29 0.64 16 6 F -0.13 -1.71 16.94 2.25 0.04 -1.67 16 7 C 0.13 1.79 6.32 -83.54 -0.53 1.26 16 8 N -0.67 -9.08 5.23 -9.78 -0.05 -9.13 16 9 C 0.53 8.31 6.93 -10.98 -0.08 8.23 16 10 O -0.52 -9.13 13.67 5.54 0.08 -9.06 16 11 C 0.08 1.25 3.21 -68.87 -0.22 1.03 16 12 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 13 N -0.83 -13.30 8.94 -5.65 -0.05 -13.35 16 14 C -0.14 -2.65 4.78 -26.73 -0.13 -2.78 16 15 C 0.03 0.61 4.74 -27.88 -0.13 0.47 16 16 C -0.53 -14.29 9.11 -34.44 -0.31 -14.61 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.15 -2.06 7.69 -39.28 -0.30 -2.36 16 25 C 0.11 1.44 6.70 -39.16 -0.26 1.18 16 26 O -0.30 -3.80 10.28 -34.49 -0.35 -4.15 16 27 C 0.02 0.22 9.81 101.05 0.99 1.21 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.07 16 31 H 0.15 1.24 6.29 -52.49 -0.33 0.91 16 32 H 0.42 4.80 8.65 -40.82 -0.35 4.45 16 33 H 0.35 5.61 8.58 -39.29 -0.34 5.28 16 34 H 0.36 5.79 7.55 -39.29 -0.30 5.49 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 40 H 0.17 2.31 4.43 -52.48 -0.23 2.08 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 43 H 0.06 0.49 7.66 -51.92 -0.40 0.09 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -32.09 364.94 -6.04 -38.13 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.57 Total: 10.74 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.98 Total: -4.44 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.63 Total: -47.52 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.63 Total: -16.91 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.09 -6.04 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424147101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.627 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds