Wall clock time and date at job start Tue Mar 31 2020 14:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36060 * 116.99848 * 2 1 4 4 C 1.38597 * 119.99295 * 359.97438 * 3 2 1 5 5 C 1.38325 * 120.04428 * 179.69958 * 4 3 2 6 6 F 1.35096 * 119.98284 * 180.32496 * 5 4 3 7 7 C 1.39019 * 120.03116 * 0.60543 * 5 4 3 8 8 N 1.40212 * 120.00303 * 179.70159 * 7 5 4 9 9 C 1.34777 * 119.99621 * 214.37134 * 8 7 5 10 10 O 1.21304 * 120.00133 * 355.53705 * 9 8 7 11 11 C 1.50702 * 120.00052 * 175.53527 * 9 8 7 12 12 H 1.09007 * 109.46928 * 39.99977 * 11 9 8 13 13 N 1.46900 * 109.47240 * 160.00009 * 11 9 8 14 14 C 1.52995 * 109.47199 * 279.99981 * 11 9 8 15 15 C 1.52999 * 109.47009 * 174.99649 * 14 11 9 16 16 C 1.50703 * 109.47510 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99219 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00353 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00141 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00088 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46943 * 59.99921 * 20 18 16 22 22 H 1.48496 * 109.47565 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47350 * 300.00352 * 20 18 16 24 24 C 1.38771 * 119.98943 * 359.42129 * 7 5 4 25 25 C 1.38511 * 119.95851 * 0.27543 * 24 7 5 26 26 O 1.36033 * 120.02222 * 180.02562 * 25 24 7 27 27 C 1.42901 * 117.00008 * 0.02562 * 26 25 24 28 28 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47476 * 299.99402 * 1 2 3 30 30 H 1.08995 * 109.47892 * 60.00392 * 1 2 3 31 31 H 1.08000 * 119.97788 * 0.02562 * 4 3 2 32 32 H 0.96994 * 120.00515 * 34.36501 * 8 7 5 33 33 H 1.00898 * 111.00422 * 59.99987 * 13 11 9 34 34 H 1.00896 * 111.00103 * 183.96227 * 13 11 9 35 35 H 1.09003 * 109.47130 * 55.00318 * 14 11 9 36 36 H 1.09000 * 109.47282 * 294.99612 * 14 11 9 37 37 H 1.09004 * 109.47345 * 60.00155 * 15 14 11 38 38 H 1.08997 * 109.47771 * 300.00268 * 15 14 11 39 39 H 0.97004 * 120.00352 * 180.02562 * 19 18 16 40 40 H 1.08007 * 120.02429 * 180.30178 * 24 7 5 41 41 H 1.08999 * 109.47757 * 179.97438 * 27 26 25 42 42 H 1.09001 * 109.46805 * 300.00181 * 27 26 25 43 43 H 1.09008 * 109.46714 * 59.99626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2916 2.3746 -0.0005 5 6 1.9184 3.6076 0.0057 6 9 1.1812 4.7397 0.0118 7 6 3.3066 3.6825 -0.0001 8 7 3.9413 4.9327 -0.0001 9 6 5.1025 5.0988 -0.6637 10 8 5.6400 4.1488 -1.1929 11 6 5.7333 6.4649 -0.7485 12 1 5.6275 6.9740 0.2096 13 7 7.1589 6.3267 -1.0748 14 6 5.0372 7.2812 -1.8393 15 6 5.5920 8.7071 -1.8415 16 6 4.9061 9.5115 -2.9155 17 1 4.1503 9.0514 -3.5349 18 6 5.2440 10.8342 -3.1082 19 7 6.1647 11.3942 -2.3543 20 14 4.3942 11.8310 -4.4400 21 1 2.9336 11.8689 -4.1739 22 1 4.9325 13.2149 -4.4421 23 1 4.6402 11.2016 -5.7623 24 6 4.0639 2.5197 -0.0001 25 6 3.4358 1.2851 -0.0001 26 8 4.1770 0.1444 0.0004 27 6 5.5981 0.2941 0.0015 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5137 -0.8899 31 1 0.2131 2.3175 -0.0005 32 1 3.5447 5.6780 0.4774 33 1 7.2836 5.8574 -1.9592 34 1 7.6187 7.2248 -1.0739 35 1 3.9652 7.3089 -1.6442 36 1 5.2182 6.8195 -2.8099 37 1 6.6641 8.6796 -2.0366 38 1 5.4112 9.1689 -0.8709 39 1 6.4022 12.3249 -2.4895 40 1 5.1425 2.5772 0.0002 41 1 6.0672 -0.6898 0.0022 42 1 5.9062 0.8432 -0.8883 43 1 5.9049 0.8433 0.8917 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424147101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:44 Heat of formation + Delta-G solvation = -154.485496 kcal Electronic energy + Delta-G solvation = -27664.336969 eV Core-core repulsion = 23430.919936 eV Total energy + Delta-G solvation = -4233.417033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.99839 -42.00042 -41.01985 -39.48721 -38.17307 -37.04351 -35.42528 -34.86084 -31.71541 -31.23854 -30.79030 -28.57857 -28.11533 -27.68876 -25.79207 -23.83441 -23.39634 -22.35861 -21.30090 -19.97024 -19.16342 -19.03301 -18.42643 -17.91265 -17.80382 -17.29099 -16.74703 -16.67427 -16.47393 -16.22891 -16.11024 -15.93720 -15.73306 -15.58154 -15.38266 -14.89372 -14.74069 -14.33686 -14.08096 -13.68934 -13.57671 -13.47473 -13.25733 -12.95710 -12.72935 -12.61722 -12.54559 -12.38379 -12.31171 -12.11995 -11.82974 -11.70898 -11.33205 -10.93573 -10.82984 -10.56464 -9.78531 -9.68561 -8.70509 -8.22481 -6.32611 -0.06008 -0.04855 1.38015 1.40547 1.40672 1.48864 1.75459 2.20153 2.23460 2.36576 2.39336 3.05071 3.11352 3.46337 3.55923 3.69031 3.91852 3.95643 4.06295 4.16871 4.23578 4.33987 4.35003 4.40315 4.43480 4.55144 4.62303 4.69899 4.74867 4.79016 4.84846 4.91374 5.05248 5.12124 5.45251 5.53358 5.64111 5.79385 5.93970 5.99323 6.19968 6.24094 6.42600 6.44900 6.82417 6.94148 7.36490 8.87991 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017656 B = 0.002720 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.449181 B =10290.866434 C =11422.409241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.318 6.318 3 C 0.108 3.892 4 C -0.180 4.180 5 C 0.069 3.931 6 F -0.134 7.134 7 C 0.111 3.889 8 N -0.661 5.661 9 C 0.532 3.468 10 O -0.540 6.540 11 C 0.086 3.914 12 H 0.116 0.884 13 N -0.827 5.827 14 C -0.123 4.123 15 C 0.031 3.969 16 C -0.547 4.547 17 H 0.053 0.947 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.271 1.271 24 C -0.158 4.158 25 C 0.098 3.902 26 O -0.315 6.315 27 C 0.020 3.980 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.180 0.820 32 H 0.426 0.574 33 H 0.346 0.654 34 H 0.356 0.644 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.006 0.994 38 H 0.004 0.996 39 H 0.264 0.736 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.053 0.947 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -22.151 8.266 25.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.062 3.938 4 C -0.199 4.199 5 C 0.047 3.953 6 F -0.113 7.113 7 C 0.015 3.985 8 N -0.308 5.308 9 C 0.320 3.680 10 O -0.415 6.415 11 C -0.030 4.030 12 H 0.134 0.866 13 N -0.359 5.359 14 C -0.163 4.163 15 C -0.006 4.006 16 C -0.585 4.585 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.179 4.179 25 C 0.052 3.948 26 O -0.229 6.229 27 C -0.074 4.074 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.197 0.803 32 H 0.264 0.736 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.175 0.825 41 H 0.146 0.854 42 H 0.071 0.929 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.987 -23.401 8.570 26.492 hybrid contribution -0.703 2.418 -1.326 2.846 sum -9.690 -20.983 7.244 24.221 Atomic orbital electron populations 1.23468 0.76071 1.06044 1.02626 1.86203 1.23588 1.24673 1.88696 1.17956 0.88708 0.85575 1.01600 1.20983 1.02284 0.88600 1.08074 1.17079 0.86708 0.82905 1.08558 1.91500 1.76496 1.48950 1.94327 1.17498 0.89698 0.86375 1.04919 1.43358 1.23817 1.11216 1.52371 1.20983 0.79674 0.91238 0.76090 1.90606 1.62042 1.42645 1.46253 1.21367 0.89885 0.90370 1.01329 0.86583 1.58764 1.09352 1.27590 1.40145 1.22156 1.00339 0.96698 0.97064 1.18956 0.95424 0.90454 0.95757 1.21591 1.22061 0.96494 1.18371 0.92866 1.25831 0.95772 0.99104 0.98455 1.70040 1.32277 1.13470 1.40725 0.85626 0.79054 0.77601 0.79536 1.19346 1.20743 1.19644 1.21072 1.01849 0.89142 1.05833 1.18246 0.88850 0.86034 1.01698 1.86143 1.20471 1.27528 1.88750 1.23327 0.76750 1.05499 1.01826 0.85992 0.91063 0.91505 0.80266 0.73593 0.84120 0.82865 0.91826 0.93504 0.97604 0.97782 0.92684 0.82503 0.85423 0.92872 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -6.48 10.28 -80.23 -0.82 -7.30 16 3 C 0.11 2.46 6.70 22.57 0.15 2.61 16 4 C -0.18 -3.57 9.01 22.38 0.20 -3.37 16 5 C 0.07 1.66 7.30 22.48 0.16 1.83 16 6 F -0.13 -3.27 16.94 44.97 0.76 -2.51 16 7 C 0.11 2.95 6.32 38.11 0.24 3.20 16 8 N -0.66 -17.47 5.23 -303.23 -1.59 -19.06 16 9 C 0.53 16.49 6.93 87.66 0.61 17.10 16 10 O -0.54 -19.01 13.67 -3.10 -0.04 -19.06 16 11 C 0.09 2.72 3.21 44.17 0.14 2.86 16 12 H 0.12 3.34 8.14 -2.38 -0.02 3.32 16 13 N -0.83 -26.44 8.94 -171.80 -1.54 -27.97 16 14 C -0.12 -4.67 4.78 30.59 0.15 -4.52 16 15 C 0.03 1.50 4.74 29.85 0.14 1.64 16 16 C -0.55 -29.84 9.11 25.60 0.23 -29.61 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.39 5.46 84.65 0.46 0.86 16 19 N -0.93 -53.78 13.29 21.44 0.28 -53.49 16 20 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 C -0.16 -4.25 7.69 22.46 0.17 -4.08 16 25 C 0.10 2.52 6.70 22.55 0.15 2.67 16 26 O -0.32 -7.76 10.28 -79.92 -0.82 -8.58 16 27 C 0.02 0.37 9.81 113.37 1.11 1.49 16 28 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.07 0.53 7.66 -2.39 -0.02 0.52 16 30 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 31 H 0.18 2.38 6.29 -2.91 -0.02 2.36 16 32 H 0.43 9.42 8.65 -92.71 -0.80 8.62 16 33 H 0.35 11.24 8.58 -89.70 -0.77 10.47 16 34 H 0.36 11.61 7.55 -89.70 -0.68 10.93 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.01 0.29 6.87 -2.39 -0.02 0.27 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.16 4.45 4.43 -2.91 -0.01 4.44 16 41 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.08 7.66 -2.39 -0.02 1.06 16 43 H 0.06 1.04 7.66 -2.38 -0.02 1.03 16 Total: -1.00 -68.15 364.94 2.14 -66.01 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -1.16 Total: 32.81 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.04 Total: -6.11 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -2.84 Total: -100.52 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.69 Total: -34.94 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.76 Total: -2.51 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -68.15 2.14 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424147101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.474 kcal (2) G-P(sol) polarization free energy of solvation -68.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds