Wall clock time and date at job start Tue Mar 31 2020 14:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00121 * 2 1 4 4 C 1.38816 * 120.01430 * 0.02562 * 3 2 1 5 5 C 1.38177 * 120.09665 * 179.97438 * 4 3 2 6 6 C 1.38156 * 120.12723 * 359.75295 * 5 4 3 7 7 C 1.38945 * 120.03112 * 0.50402 * 6 5 4 8 8 N 1.39731 * 120.04637 * 179.77079 * 7 6 5 9 9 C 1.38938 * 119.99737 * 0.28554 * 8 7 6 10 10 C 1.38969 * 120.17298 * 261.74784 * 9 8 7 11 11 C 1.37949 * 120.06060 * 180.02562 * 10 9 8 12 12 C 1.38610 * 120.42840 * 0.02562 * 11 10 9 13 13 C 1.37760 * 120.35152 * 359.97438 * 12 11 10 14 14 C 1.39725 * 119.92454 * 0.02562 * 13 12 11 15 15 C 1.47441 * 120.20686 * 180.02562 * 14 13 12 16 16 O 1.21602 * 120.00301 * 185.53093 * 15 14 13 17 17 N 1.34785 * 119.99869 * 5.52421 * 15 14 13 18 18 C 1.46498 * 119.99921 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46912 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00330 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99807 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00462 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00214 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47045 * 59.99381 * 23 21 19 25 25 H 1.48497 * 109.47502 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46740 * 299.99945 * 23 21 19 27 27 C 1.38565 * 120.01870 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47633 * 59.99981 * 1 2 3 29 29 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47344 * 300.00018 * 1 2 3 31 31 H 1.07999 * 119.95459 * 359.95877 * 4 3 2 32 32 H 1.07998 * 119.94003 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.98659 * 180.27427 * 6 5 4 34 34 H 0.96990 * 119.99957 * 180.28005 * 8 7 6 35 35 H 1.07999 * 119.96792 * 0.04637 * 10 9 8 36 36 H 1.08002 * 119.78652 * 180.28086 * 11 10 9 37 37 H 1.07997 * 119.82362 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.03388 * 180.02562 * 13 12 11 39 39 H 0.97002 * 119.99521 * 0.02562 * 17 15 14 40 40 H 1.09003 * 109.46723 * 300.00161 * 18 17 15 41 41 H 1.08995 * 109.46943 * 59.99938 * 18 17 15 42 42 H 0.96998 * 120.00484 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.06951 * 0.04458 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9158 3.6074 0.0011 6 6 3.2952 3.6847 0.0062 7 6 4.0568 2.5226 0.0003 8 7 5.4520 2.6005 0.0007 9 6 6.0785 3.8405 0.0130 10 6 6.5470 4.3981 -1.1706 11 6 7.1691 5.6293 -1.1556 12 6 7.3326 6.3188 0.0356 13 6 6.8748 5.7822 1.2190 14 6 6.2425 4.5362 1.2209 15 6 5.7496 3.9564 2.4837 16 8 5.2911 2.8302 2.4976 17 7 5.8074 4.6745 3.6228 18 6 5.3182 4.0982 4.8777 19 6 5.4942 5.0977 5.9917 20 1 5.9275 6.0653 5.7857 21 6 5.1030 4.7765 7.2742 22 7 4.5758 3.5981 7.5252 23 14 5.3217 6.0151 8.6553 24 1 4.5518 7.2459 8.3430 25 1 4.8269 5.4305 9.9275 26 1 6.7611 6.3534 8.7934 27 6 3.4297 1.2838 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2117 2.3182 0.0003 32 1 1.3254 4.5117 0.0019 33 1 3.7817 4.6488 0.0111 34 1 5.9830 1.7889 -0.0076 35 1 6.4236 3.8673 -2.1030 36 1 7.5275 6.0605 -2.0787 37 1 7.8215 7.2817 0.0361 38 1 7.0046 6.3241 2.1442 39 1 6.1730 5.5730 3.6116 40 1 4.2617 3.8502 4.7760 41 1 5.8831 3.1947 5.1070 42 1 4.3002 3.3722 8.4274 43 1 4.0192 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427630864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:01 Heat of formation + Delta-G solvation = -8.093526 kcal Electronic energy + Delta-G solvation = -26949.916228 eV Core-core repulsion = 23153.616452 eV Total energy + Delta-G solvation = -3796.299776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42107 -39.61422 -37.94432 -37.45093 -35.01053 -34.03393 -32.43471 -31.08810 -30.90632 -29.79135 -28.06396 -27.25054 -26.91939 -23.89679 -22.84199 -22.41956 -22.16615 -20.80983 -19.77911 -18.28221 -17.86581 -17.09806 -16.09719 -15.86874 -15.78407 -15.61038 -15.54173 -15.37628 -14.84947 -14.62297 -14.23308 -14.19164 -13.93153 -13.37712 -13.14344 -12.85068 -12.71449 -12.55730 -12.16010 -12.01575 -11.89430 -11.70420 -11.63351 -11.37461 -11.15359 -10.98889 -10.87093 -10.73228 -10.31827 -10.02464 -9.40568 -9.02445 -8.99307 -8.81577 -8.71915 -8.09647 -7.84648 -7.27384 -6.15645 -4.22971 0.91284 1.20936 1.74402 1.86838 3.19001 3.25316 3.29445 3.30096 3.31566 3.73316 4.03507 4.11744 4.14109 4.36802 4.81227 4.87511 4.98753 5.04681 5.15253 5.19297 5.20264 5.29653 5.36906 5.39259 5.47192 5.49867 5.54370 5.70572 5.80988 5.83752 6.11454 6.17217 6.34625 6.38477 6.49492 6.53996 6.67442 6.76121 6.85801 7.32484 7.43507 7.52328 7.53454 7.66258 7.68982 7.86925 7.97706 8.62355 8.78665 9.10176 9.43548 10.94435 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.004057 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.134018 B = 6900.767089 C = 9373.007585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.166 3.834 4 C -0.265 4.265 5 C -0.038 4.038 6 C -0.219 4.219 7 C 0.280 3.720 8 N -0.682 5.682 9 C 0.195 3.805 10 C -0.129 4.129 11 C -0.098 4.098 12 C -0.126 4.126 13 C -0.084 4.084 14 C -0.125 4.125 15 C 0.535 3.465 16 O -0.531 6.531 17 N -0.707 5.707 18 C 0.253 3.747 19 C -0.545 4.545 20 H 0.062 0.938 21 C 0.065 3.935 22 N -0.885 5.885 23 Si 0.903 3.097 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.217 4.217 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.409 0.591 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.388 0.612 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 1.602 -20.167 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.120 3.880 4 C -0.285 4.285 5 C -0.057 4.057 6 C -0.241 4.241 7 C 0.178 3.822 8 N -0.308 5.308 9 C 0.101 3.899 10 C -0.149 4.149 11 C -0.117 4.117 12 C -0.144 4.144 13 C -0.104 4.104 14 C -0.130 4.130 15 C 0.320 3.680 16 O -0.409 6.409 17 N -0.356 5.356 18 C 0.132 3.868 19 C -0.583 4.583 20 H 0.080 0.920 21 C -0.139 4.139 22 N -0.522 5.522 23 Si 0.730 3.270 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.201 1.201 27 C -0.240 4.240 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.247 0.753 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.221 0.779 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.926 0.606 -19.934 19.965 hybrid contribution 0.275 0.990 1.065 1.480 sum -0.651 1.597 -18.869 18.948 Atomic orbital electron populations 1.22995 0.78734 1.03420 1.01353 1.86025 1.21121 1.27418 1.88763 1.18550 0.91505 0.83776 0.94135 1.20882 0.99386 0.92285 1.15991 1.20566 0.93725 0.96725 0.94659 1.20489 0.93848 0.96771 1.13010 1.17161 0.82395 0.92778 0.89851 1.41374 1.02826 1.05353 1.81287 1.17333 0.94521 0.86931 0.91135 1.21439 0.99938 0.96147 0.97394 1.21146 0.97978 0.94348 0.98242 1.21125 1.00617 1.00348 0.92287 1.21388 0.96069 0.94008 0.98917 1.20875 1.01413 0.95978 0.94754 1.18049 0.80352 0.86208 0.83415 1.90777 1.45601 1.18427 1.86084 1.46427 1.61855 1.18002 1.09313 1.19088 0.95177 0.94405 0.78086 1.21174 1.43235 1.00918 0.92962 0.92023 1.24939 0.94677 0.95560 0.98716 1.69966 1.40416 1.20347 1.21454 0.86487 0.78570 0.81040 0.80886 1.20046 1.21045 1.20066 1.19520 0.91647 0.96578 1.16262 0.92889 0.88650 0.92590 0.86191 0.86233 0.86667 0.75269 0.85308 0.85543 0.85404 0.85061 0.77885 0.95452 0.95531 0.92387 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.67 10.49 -19.43 -0.20 -4.88 16 3 C 0.17 2.65 6.68 -39.25 -0.26 2.38 16 4 C -0.26 -3.90 9.04 -39.39 -0.36 -4.25 16 5 C -0.04 -0.57 10.03 -39.63 -0.40 -0.96 16 6 C -0.22 -3.57 9.27 -39.35 -0.36 -3.93 16 7 C 0.28 4.62 5.30 -83.77 -0.44 4.17 16 8 N -0.68 -10.25 3.89 -8.25 -0.03 -10.28 16 9 C 0.20 2.79 4.44 -83.57 -0.37 2.42 16 10 C -0.13 -1.44 9.96 -39.42 -0.39 -1.83 16 11 C -0.10 -0.93 10.03 -39.55 -0.40 -1.33 16 12 C -0.13 -1.27 10.02 -39.62 -0.40 -1.66 16 13 C -0.08 -1.08 9.52 -39.20 -0.37 -1.46 16 14 C -0.13 -2.00 5.58 -104.80 -0.58 -2.59 16 15 C 0.53 11.12 7.73 -12.51 -0.10 11.02 16 16 O -0.53 -12.75 14.04 5.28 0.07 -12.68 16 17 N -0.71 -15.31 5.50 -62.56 -0.34 -15.66 16 18 C 0.25 6.82 5.43 -5.20 -0.03 6.79 16 19 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 20 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 21 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 22 N -0.88 -26.32 13.29 55.43 0.74 -25.59 16 23 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.22 -3.58 9.83 -39.24 -0.39 -3.96 16 28 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 31 H 0.12 1.46 6.29 -52.49 -0.33 1.13 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.85 6.78 -52.49 -0.36 1.50 16 34 H 0.41 5.62 8.83 -40.82 -0.36 5.26 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.54 6.44 -52.49 -0.34 1.20 16 39 H 0.39 7.21 6.38 -40.82 -0.26 6.95 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -34.08 366.14 -8.91 -42.98 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.36 Total: 12.05 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -4.28 Total: -7.39 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.36 Total: -51.53 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.13 Total: -17.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.08 -8.91 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427630864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.887 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds