Wall clock time and date at job start Tue Mar 31 2020 14:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00121 * 2 1 4 4 C 1.38816 * 120.01430 * 0.02562 * 3 2 1 5 5 C 1.38177 * 120.09665 * 179.97438 * 4 3 2 6 6 C 1.38156 * 120.12723 * 359.75295 * 5 4 3 7 7 C 1.38945 * 120.03112 * 0.50402 * 6 5 4 8 8 N 1.39731 * 120.04637 * 179.77079 * 7 6 5 9 9 C 1.38938 * 119.99737 * 0.28554 * 8 7 6 10 10 C 1.38969 * 120.17298 * 261.74784 * 9 8 7 11 11 C 1.37949 * 120.06060 * 180.02562 * 10 9 8 12 12 C 1.38610 * 120.42840 * 0.02562 * 11 10 9 13 13 C 1.37760 * 120.35152 * 359.97438 * 12 11 10 14 14 C 1.39725 * 119.92454 * 0.02562 * 13 12 11 15 15 C 1.47441 * 120.20686 * 180.02562 * 14 13 12 16 16 O 1.21602 * 120.00301 * 185.53093 * 15 14 13 17 17 N 1.34785 * 119.99869 * 5.52421 * 15 14 13 18 18 C 1.46498 * 119.99921 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46912 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00330 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99807 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00462 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00214 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47045 * 59.99381 * 23 21 19 25 25 H 1.48497 * 109.47502 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46740 * 299.99945 * 23 21 19 27 27 C 1.38565 * 120.01870 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47633 * 59.99981 * 1 2 3 29 29 H 1.09002 * 109.46950 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47344 * 300.00018 * 1 2 3 31 31 H 1.07999 * 119.95459 * 359.95877 * 4 3 2 32 32 H 1.07998 * 119.94003 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.98659 * 180.27427 * 6 5 4 34 34 H 0.96990 * 119.99957 * 180.28005 * 8 7 6 35 35 H 1.07999 * 119.96792 * 0.04637 * 10 9 8 36 36 H 1.08002 * 119.78652 * 180.28086 * 11 10 9 37 37 H 1.07997 * 119.82362 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.03388 * 180.02562 * 13 12 11 39 39 H 0.97002 * 119.99521 * 0.02562 * 17 15 14 40 40 H 1.09003 * 109.46723 * 300.00161 * 18 17 15 41 41 H 1.08995 * 109.46943 * 59.99938 * 18 17 15 42 42 H 0.96998 * 120.00484 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.06951 * 0.04458 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9158 3.6074 0.0011 6 6 3.2952 3.6847 0.0062 7 6 4.0568 2.5226 0.0003 8 7 5.4520 2.6005 0.0007 9 6 6.0785 3.8405 0.0130 10 6 6.5470 4.3981 -1.1706 11 6 7.1691 5.6293 -1.1556 12 6 7.3326 6.3188 0.0356 13 6 6.8748 5.7822 1.2190 14 6 6.2425 4.5362 1.2209 15 6 5.7496 3.9564 2.4837 16 8 5.2911 2.8302 2.4976 17 7 5.8074 4.6745 3.6228 18 6 5.3182 4.0982 4.8777 19 6 5.4942 5.0977 5.9917 20 1 5.9275 6.0653 5.7857 21 6 5.1030 4.7765 7.2742 22 7 4.5758 3.5981 7.5252 23 14 5.3217 6.0151 8.6553 24 1 4.5518 7.2459 8.3430 25 1 4.8269 5.4305 9.9275 26 1 6.7611 6.3534 8.7934 27 6 3.4297 1.2838 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2117 2.3182 0.0003 32 1 1.3254 4.5117 0.0019 33 1 3.7817 4.6488 0.0111 34 1 5.9830 1.7889 -0.0076 35 1 6.4236 3.8673 -2.1030 36 1 7.5275 6.0605 -2.0787 37 1 7.8215 7.2817 0.0361 38 1 7.0046 6.3241 2.1442 39 1 6.1730 5.5730 3.6116 40 1 4.2617 3.8502 4.7760 41 1 5.8831 3.1947 5.1070 42 1 4.3002 3.3722 8.4274 43 1 4.0192 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427630864.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:00 Heat of formation + Delta-G solvation = -30.791025 kcal Electronic energy + Delta-G solvation = -26950.900465 eV Core-core repulsion = 23153.616452 eV Total energy + Delta-G solvation = -3797.284014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61589 -40.79212 -39.41574 -38.53497 -36.36019 -35.75158 -34.38896 -32.28496 -32.00947 -30.86870 -29.38851 -28.92667 -27.94377 -25.46109 -24.09582 -23.75918 -23.42335 -21.97020 -21.36612 -19.56957 -19.15551 -18.37999 -17.77726 -17.19321 -17.04709 -16.80291 -16.61994 -16.51953 -16.40623 -16.02226 -15.79571 -15.53042 -15.13317 -14.53029 -14.41347 -14.21066 -14.07668 -13.95016 -13.84572 -13.32287 -13.09920 -12.96054 -12.89462 -12.68863 -12.63004 -12.41956 -12.25205 -12.12047 -11.82462 -11.53327 -11.24098 -10.80759 -10.59345 -10.05530 -9.84999 -9.70103 -9.29177 -8.44741 -8.30561 -6.48354 -0.15091 0.29304 0.53131 0.68303 1.41280 1.45998 1.54200 2.00933 2.16772 2.30251 2.55263 2.68416 2.87446 2.93981 3.04200 3.84539 3.88997 3.92340 4.15929 4.21855 4.25183 4.28841 4.40252 4.43572 4.44795 4.48715 4.59287 4.68404 4.72164 4.90029 4.95922 5.08490 5.20369 5.28077 5.35124 5.37882 5.40919 5.45667 5.48547 5.56659 5.64402 5.67951 5.82083 5.88006 6.41241 6.54750 6.61747 6.74352 6.89395 7.21062 7.46430 8.81489 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008932 B = 0.004057 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.134018 B = 6900.767089 C = 9373.007585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.156 3.844 4 C -0.271 4.271 5 C -0.043 4.043 6 C -0.238 4.238 7 C 0.271 3.729 8 N -0.684 5.684 9 C 0.180 3.820 10 C -0.127 4.127 11 C -0.076 4.076 12 C -0.115 4.115 13 C -0.087 4.087 14 C -0.157 4.157 15 C 0.532 3.468 16 O -0.574 6.574 17 N -0.705 5.705 18 C 0.274 3.726 19 C -0.558 4.558 20 H 0.084 0.916 21 C 0.005 3.995 22 N -0.931 5.931 23 Si 0.986 3.014 24 H -0.261 1.261 25 H -0.285 1.285 26 H -0.260 1.260 27 C -0.245 4.245 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.114 0.886 34 H 0.409 0.591 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.404 0.596 40 H -0.017 1.017 41 H -0.015 1.015 42 H 0.269 0.731 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 4.856 -21.783 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.110 3.890 4 C -0.291 4.291 5 C -0.061 4.061 6 C -0.261 4.261 7 C 0.168 3.832 8 N -0.309 5.309 9 C 0.086 3.914 10 C -0.146 4.146 11 C -0.094 4.094 12 C -0.132 4.132 13 C -0.106 4.106 14 C -0.162 4.162 15 C 0.320 3.680 16 O -0.455 6.455 17 N -0.356 5.356 18 C 0.151 3.849 19 C -0.596 4.596 20 H 0.102 0.898 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.808 3.192 24 H -0.185 1.185 25 H -0.210 1.210 26 H -0.185 1.185 27 C -0.269 4.269 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.132 0.868 34 H 0.247 0.753 35 H 0.166 0.834 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.155 0.845 39 H 0.240 0.760 40 H 0.000 1.000 41 H 0.003 0.997 42 H 0.078 0.922 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.062 3.896 -21.594 21.943 hybrid contribution 0.015 -0.067 1.441 1.442 sum -0.048 3.829 -20.153 20.514 Atomic orbital electron populations 1.23327 0.76420 1.05446 1.02213 1.86002 1.23584 1.27009 1.88573 1.18771 0.91600 0.84769 0.93833 1.21184 1.00705 0.91733 1.15477 1.20939 0.93573 0.97929 0.93682 1.20628 0.94621 0.96610 1.14206 1.17345 0.83179 0.92907 0.89724 1.41447 1.02482 1.06055 1.80949 1.17631 0.95198 0.86703 0.91828 1.21665 0.99353 0.96953 0.96656 1.21676 0.95125 0.92861 0.99742 1.21542 0.99187 1.01468 0.91050 1.21549 0.95641 0.92693 1.00722 1.20527 1.05007 0.98200 0.92477 1.18871 0.78950 0.85562 0.84607 1.90742 1.47406 1.20435 1.86926 1.46134 1.62445 1.18855 1.08159 1.18461 0.91962 0.93563 0.80890 1.21570 1.43268 1.01594 0.93159 0.89809 1.26089 0.93811 0.97675 1.01905 1.70145 1.41586 1.22950 1.22285 0.85194 0.79297 0.78151 0.76507 1.18517 1.21034 1.18489 1.19729 0.92509 0.96787 1.17826 0.91070 0.86185 0.92572 0.83614 0.83727 0.86771 0.75279 0.83399 0.81257 0.81611 0.84478 0.75981 0.99953 0.99750 0.92235 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.34 -10.11 10.49 -92.45 -0.97 -11.08 16 3 C 0.16 5.18 6.68 22.49 0.15 5.33 16 4 C -0.27 -8.00 9.04 22.39 0.20 -7.80 16 5 C -0.04 -1.28 10.03 22.24 0.22 -1.06 16 6 C -0.24 -8.01 9.27 22.42 0.21 -7.80 16 7 C 0.27 9.44 5.30 38.20 0.20 9.64 16 8 N -0.68 -21.60 3.89 -180.01 -0.70 -22.30 16 9 C 0.18 5.14 4.44 38.71 0.17 5.31 16 10 C -0.13 -2.49 9.96 22.38 0.22 -2.26 16 11 C -0.08 -1.07 10.03 22.29 0.22 -0.84 16 12 C -0.11 -1.80 10.02 22.25 0.22 -1.58 16 13 C -0.09 -2.06 9.52 22.52 0.21 -1.84 16 14 C -0.16 -5.07 5.58 -19.98 -0.11 -5.18 16 15 C 0.53 23.37 7.73 86.67 0.67 24.04 16 16 O -0.57 -29.80 14.04 -4.04 -0.06 -29.85 16 17 N -0.71 -32.04 5.50 -470.09 -2.58 -34.62 16 18 C 0.27 15.75 5.43 85.63 0.46 16.22 16 19 C -0.56 -31.21 9.28 25.60 0.24 -30.97 16 20 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 21 C 0.00 0.27 5.46 84.65 0.46 0.74 16 22 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 23 Si 0.99 42.83 29.54 68.60 2.03 44.86 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 27 C -0.25 -8.66 9.83 22.49 0.22 -8.44 16 28 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 29 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 31 H 0.15 3.39 6.29 -2.91 -0.02 3.37 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.11 3.75 6.78 -2.91 -0.02 3.73 16 34 H 0.41 12.17 8.83 -92.72 -0.82 11.35 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 37 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.14 2.98 6.44 -2.91 -0.02 2.96 16 39 H 0.40 15.28 6.38 -92.71 -0.59 14.68 16 40 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -80.46 366.14 2.75 -77.72 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -0.35 Total: 37.54 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.10 Total: -5.01 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -3.00 Total: -114.17 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.03 Total: -40.93 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -80.46 2.75 -77.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427630864.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.925 kcal (2) G-P(sol) polarization free energy of solvation -80.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds