Wall clock time and date at job start Tue Mar 31 2020 14:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35831 * 116.99930 * 2 1 4 4 C 1.39905 * 119.71664 * 0.02562 * 3 2 1 5 5 C 1.35896 * 120.98766 * 179.97438 * 4 3 2 6 6 C 1.40772 * 119.95794 * 0.04403 * 5 4 3 7 7 N 1.33529 * 120.83359 * 180.02562 * 6 5 4 8 8 C 1.30994 * 121.87485 * 179.97438 * 7 6 5 9 9 C 1.50702 * 119.04400 * 179.97438 * 8 7 6 10 10 C 1.52998 * 117.49438 * 163.74167 * 9 8 7 11 11 C 1.53006 * 117.49925 * 95.08566 * 9 8 7 12 12 C 1.39242 * 121.90476 * 359.97438 * 8 7 6 13 13 C 1.38910 * 119.56169 * 0.02562 * 12 8 7 14 14 C 1.47825 * 121.11390 * 180.02562 * 13 12 8 15 15 O 1.21549 * 120.00195 * 174.13800 * 14 13 12 16 16 N 1.34774 * 120.00017 * 354.14705 * 14 13 12 17 17 C 1.46504 * 120.00087 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47060 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00027 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00097 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00301 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99826 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47154 * 90.00306 * 22 20 18 24 24 H 1.48504 * 109.47039 * 210.00013 * 22 20 18 25 25 H 1.48497 * 109.47369 * 330.00435 * 22 20 18 26 26 C 1.41735 * 119.19255 * 359.93047 * 6 5 4 27 27 C 1.37755 * 119.71519 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46590 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46693 * 300.00433 * 1 2 3 30 30 H 1.08995 * 109.46867 * 60.00026 * 1 2 3 31 31 H 1.08002 * 119.50473 * 359.97438 * 4 3 2 32 32 H 1.07993 * 120.02161 * 180.02562 * 5 4 3 33 33 H 1.08991 * 115.55026 * 309.41493 * 9 8 7 34 34 H 1.08995 * 117.50540 * 0.02562 * 10 9 8 35 35 H 1.09009 * 117.49448 * 145.02090 * 10 9 8 36 36 H 1.08993 * 117.49928 * 214.98209 * 11 9 8 37 37 H 1.09002 * 117.49533 * 359.97112 * 11 9 8 38 38 H 1.08003 * 120.21810 * 180.02562 * 12 8 7 39 39 H 0.97000 * 119.99906 * 359.97438 * 16 14 13 40 40 H 1.08992 * 109.46969 * 299.99559 * 17 16 14 41 41 H 1.08997 * 109.46961 * 60.00275 * 17 16 14 42 42 H 0.97002 * 120.00104 * 179.97438 * 21 20 18 43 43 H 1.07991 * 120.24846 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2779 2.3798 0.0005 5 6 1.8679 3.6041 0.0011 6 6 3.2718 3.7079 0.0002 7 7 3.8697 4.9018 0.0012 8 6 5.1741 5.0221 0.0008 9 6 5.7816 6.4013 0.0015 10 6 7.2588 6.5222 0.3810 11 6 6.1770 6.9985 1.3535 12 6 6.0155 3.9127 -0.0001 13 6 5.4669 2.6365 -0.0012 14 6 6.3279 1.4349 -0.0016 15 8 5.8307 0.3309 0.1049 16 7 7.6643 1.5635 -0.1199 17 6 8.5177 0.3727 -0.1198 18 6 9.9591 0.7877 -0.2645 19 1 10.2141 1.8338 -0.3486 20 6 10.9524 -0.1682 -0.2905 21 7 12.2104 0.1939 -0.4173 22 14 10.5114 -1.9776 -0.1458 23 1 10.2782 -2.5401 -1.5001 24 1 11.6267 -2.7081 0.5083 25 1 9.2789 -2.1230 0.6696 26 6 4.0524 2.5249 0.0002 27 6 3.4217 1.2755 -0.0005 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2003 2.3086 0.0005 32 1 1.2601 4.4967 0.0019 33 1 5.3995 7.0836 -0.7577 34 1 7.7914 5.6044 0.6299 35 1 7.8485 7.2846 -0.1283 36 1 6.0552 8.0738 1.4837 37 1 5.9971 6.3941 2.2426 38 1 7.0876 4.0435 0.0001 39 1 8.0611 2.4445 -0.2052 40 1 8.3872 -0.1677 0.8177 41 1 8.2405 -0.2730 -0.9530 42 1 12.9092 -0.4786 -0.4353 43 1 4.0093 0.3695 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427634591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:41 Heat of formation + Delta-G solvation = 14.827516 kcal Electronic energy + Delta-G solvation = -26708.239154 eV Core-core repulsion = 22912.933308 eV Total energy + Delta-G solvation = -3795.305845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25411 -39.58857 -38.86134 -37.56284 -35.46144 -34.53925 -33.43717 -32.44208 -30.48981 -29.92949 -28.13917 -27.25320 -25.16011 -24.10947 -23.16134 -22.40950 -21.88135 -21.29439 -20.06958 -18.51887 -17.91358 -17.81132 -16.65966 -16.13369 -15.96742 -15.90199 -15.66077 -15.17057 -14.97765 -14.62542 -14.56956 -14.15308 -13.96992 -13.80145 -13.36774 -12.93314 -12.73913 -12.49499 -12.41557 -12.30999 -12.27420 -11.91598 -11.53992 -11.25625 -11.13043 -11.03611 -10.83999 -10.61621 -10.51464 -10.22826 -10.06547 -9.99607 -9.55814 -9.03692 -8.84977 -8.74402 -8.34097 -7.82557 -6.26262 -4.29523 0.08411 0.71173 1.70018 2.66703 3.12075 3.23748 3.30790 3.36874 3.39162 3.54279 3.65154 3.91359 4.12937 4.29226 4.42730 4.56078 4.63626 4.71058 4.79721 4.86786 4.90298 4.91517 4.92959 5.00071 5.09059 5.10709 5.23995 5.43947 5.47667 5.52208 5.61686 5.73954 5.87333 5.89984 5.96659 5.98244 6.05098 6.23614 6.53290 6.56147 6.73251 6.97712 7.05297 7.26311 7.30168 7.82560 7.99893 8.36695 8.62939 8.75156 9.32693 10.85411 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.004067 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.550886 B = 6883.053233 C = 9811.145055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.118 3.882 4 C -0.171 4.171 5 C -0.059 4.059 6 C 0.100 3.900 7 N -0.451 5.451 8 C 0.175 3.825 9 C -0.109 4.109 10 C -0.172 4.172 11 C -0.161 4.161 12 C -0.126 4.126 13 C -0.066 4.066 14 C 0.544 3.456 15 O -0.538 6.538 16 N -0.690 5.690 17 C 0.219 3.781 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.080 3.920 21 N -0.890 5.890 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.034 4.034 27 C -0.138 4.138 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.397 0.603 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.268 0.732 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.603 10.414 1.346 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.073 3.927 4 C -0.192 4.192 5 C -0.078 4.078 6 C -0.022 4.022 7 N -0.159 5.159 8 C 0.022 3.978 9 C -0.128 4.128 10 C -0.210 4.210 11 C -0.199 4.199 12 C -0.146 4.146 13 C -0.077 4.077 14 C 0.329 3.671 15 O -0.418 6.418 16 N -0.338 5.338 17 C 0.097 3.903 18 C -0.584 4.584 19 H 0.099 0.901 20 C -0.124 4.124 21 N -0.527 5.527 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.037 4.037 27 C -0.157 4.157 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.164 0.836 39 H 0.232 0.768 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -21.253 10.006 1.405 23.532 hybrid contribution 0.358 -1.036 -0.041 1.097 sum -20.894 8.970 1.365 22.779 Atomic orbital electron populations 1.23079 0.78659 1.04060 1.01172 1.86140 1.21078 1.26568 1.88541 1.19105 0.92286 0.84076 0.97228 1.21109 1.00410 0.92111 1.05530 1.20521 0.91882 0.97620 0.97789 1.18718 0.94023 0.87520 1.01982 1.67386 1.11516 1.25892 1.11102 1.20316 0.88492 0.93707 0.95271 1.20781 0.97608 0.93562 1.00857 1.23183 0.90605 1.04081 1.03092 1.22981 1.02608 1.01252 0.93039 1.22313 1.01914 0.91646 0.98762 1.20503 0.93115 0.94173 0.99888 1.18012 0.82902 0.87782 0.78356 1.90558 1.73298 1.26793 1.51185 1.46157 1.05110 1.12264 1.70238 1.19612 0.89778 0.83591 0.97293 1.21041 0.88214 0.96058 1.53133 0.90143 1.24773 0.94659 0.99268 0.93750 1.69873 0.99537 1.34519 1.48742 0.86833 0.78878 0.84804 0.79300 1.19766 1.20818 1.18440 1.18324 0.92159 0.93846 0.99330 1.21496 0.91767 0.99946 1.02478 0.88177 0.92681 0.92669 0.84736 0.84282 0.85859 0.87825 0.87680 0.88114 0.88624 0.83572 0.76796 0.95180 0.95642 0.92166 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.80 101.05 0.99 1.19 16 2 O -0.31 -4.03 10.48 -19.21 -0.20 -4.23 16 3 C 0.12 1.65 6.68 -39.13 -0.26 1.38 16 4 C -0.17 -1.90 8.94 -39.80 -0.36 -2.26 16 5 C -0.06 -0.71 9.96 -39.46 -0.39 -1.10 16 6 C 0.10 1.47 6.61 -84.84 -0.56 0.91 16 7 N -0.45 -6.47 10.18 -7.23 -0.07 -6.54 16 8 C 0.17 2.32 6.46 -82.58 -0.53 1.79 16 9 C -0.11 -1.13 6.19 -91.77 -0.57 -1.70 16 10 C -0.17 -1.55 9.78 -26.70 -0.26 -1.81 16 11 C -0.16 -1.45 10.24 -26.69 -0.27 -1.72 16 12 C -0.13 -1.76 8.83 -38.96 -0.34 -2.11 16 13 C -0.07 -1.10 5.94 -104.33 -0.62 -1.72 16 14 C 0.54 10.71 7.75 -12.34 -0.10 10.61 16 15 O -0.54 -12.00 13.52 5.32 0.07 -11.93 16 16 N -0.69 -13.83 5.50 -62.44 -0.34 -14.18 16 17 C 0.22 5.25 4.50 -5.19 -0.02 5.22 16 18 C -0.55 -14.59 9.83 -34.44 -0.34 -14.93 16 19 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 22 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 26 C -0.03 -0.56 5.76 -106.52 -0.61 -1.17 16 27 C -0.14 -2.30 9.21 -39.12 -0.36 -2.66 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.35 7.64 -51.93 -0.40 -0.05 16 30 H 0.05 0.35 7.64 -51.93 -0.40 -0.05 16 31 H 0.13 1.03 6.23 -52.49 -0.33 0.70 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 0.97 6.34 -51.93 -0.33 0.64 16 35 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.15 1.77 4.68 -52.48 -0.25 1.53 16 39 H 0.40 6.94 6.49 -40.82 -0.26 6.67 16 40 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 41 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 42 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.18 3.41 4.98 -52.49 -0.26 3.15 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -32.53 357.50 -8.87 -41.40 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.10 Total: 6.81 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.71 Total: -7.96 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.36 Total: -45.85 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.13 Total: -16.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.53 -8.87 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.228 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds