Wall clock time and date at job start Tue Mar 31 2020 14:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35831 * 116.99930 * 2 1 4 4 C 1.39905 * 119.71664 * 0.02562 * 3 2 1 5 5 C 1.35896 * 120.98766 * 179.97438 * 4 3 2 6 6 C 1.40772 * 119.95794 * 0.04403 * 5 4 3 7 7 N 1.33529 * 120.83359 * 180.02562 * 6 5 4 8 8 C 1.30994 * 121.87485 * 179.97438 * 7 6 5 9 9 C 1.50702 * 119.04400 * 179.97438 * 8 7 6 10 10 C 1.52998 * 117.49438 * 163.74167 * 9 8 7 11 11 C 1.53006 * 117.49925 * 95.08566 * 9 8 7 12 12 C 1.39242 * 121.90476 * 359.97438 * 8 7 6 13 13 C 1.38910 * 119.56169 * 0.02562 * 12 8 7 14 14 C 1.47825 * 121.11390 * 180.02562 * 13 12 8 15 15 O 1.21549 * 120.00195 * 174.13800 * 14 13 12 16 16 N 1.34774 * 120.00017 * 354.14705 * 14 13 12 17 17 C 1.46504 * 120.00087 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47060 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00027 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00097 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00301 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99826 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47154 * 90.00306 * 22 20 18 24 24 H 1.48504 * 109.47039 * 210.00013 * 22 20 18 25 25 H 1.48497 * 109.47369 * 330.00435 * 22 20 18 26 26 C 1.41735 * 119.19255 * 359.93047 * 6 5 4 27 27 C 1.37755 * 119.71519 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46590 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46693 * 300.00433 * 1 2 3 30 30 H 1.08995 * 109.46867 * 60.00026 * 1 2 3 31 31 H 1.08002 * 119.50473 * 359.97438 * 4 3 2 32 32 H 1.07993 * 120.02161 * 180.02562 * 5 4 3 33 33 H 1.08991 * 115.55026 * 309.41493 * 9 8 7 34 34 H 1.08995 * 117.50540 * 0.02562 * 10 9 8 35 35 H 1.09009 * 117.49448 * 145.02090 * 10 9 8 36 36 H 1.08993 * 117.49928 * 214.98209 * 11 9 8 37 37 H 1.09002 * 117.49533 * 359.97112 * 11 9 8 38 38 H 1.08003 * 120.21810 * 180.02562 * 12 8 7 39 39 H 0.97000 * 119.99906 * 359.97438 * 16 14 13 40 40 H 1.08992 * 109.46969 * 299.99559 * 17 16 14 41 41 H 1.08997 * 109.46961 * 60.00275 * 17 16 14 42 42 H 0.97002 * 120.00104 * 179.97438 * 21 20 18 43 43 H 1.07991 * 120.24846 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2779 2.3798 0.0005 5 6 1.8679 3.6041 0.0011 6 6 3.2718 3.7079 0.0002 7 7 3.8697 4.9018 0.0012 8 6 5.1741 5.0221 0.0008 9 6 5.7816 6.4013 0.0015 10 6 7.2588 6.5222 0.3810 11 6 6.1770 6.9985 1.3535 12 6 6.0155 3.9127 -0.0001 13 6 5.4669 2.6365 -0.0012 14 6 6.3279 1.4349 -0.0016 15 8 5.8307 0.3309 0.1049 16 7 7.6643 1.5635 -0.1199 17 6 8.5177 0.3727 -0.1198 18 6 9.9591 0.7877 -0.2645 19 1 10.2141 1.8338 -0.3486 20 6 10.9524 -0.1682 -0.2905 21 7 12.2104 0.1939 -0.4173 22 14 10.5114 -1.9776 -0.1458 23 1 10.2782 -2.5401 -1.5001 24 1 11.6267 -2.7081 0.5083 25 1 9.2789 -2.1230 0.6696 26 6 4.0524 2.5249 0.0002 27 6 3.4217 1.2755 -0.0005 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2003 2.3086 0.0005 32 1 1.2601 4.4967 0.0019 33 1 5.3995 7.0836 -0.7577 34 1 7.7914 5.6044 0.6299 35 1 7.8485 7.2846 -0.1283 36 1 6.0552 8.0738 1.4837 37 1 5.9971 6.3941 2.2426 38 1 7.0876 4.0435 0.0001 39 1 8.0611 2.4445 -0.2052 40 1 8.3872 -0.1677 0.8177 41 1 8.2405 -0.2730 -0.9530 42 1 12.9092 -0.4786 -0.4353 43 1 4.0093 0.3695 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427634591.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:41 Heat of formation + Delta-G solvation = -6.582658 kcal Electronic energy + Delta-G solvation = -26709.167568 eV Core-core repulsion = 22912.933308 eV Total energy + Delta-G solvation = -3796.234260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37954 -40.68396 -40.24245 -38.43790 -36.51836 -36.21864 -34.75548 -34.33678 -31.64029 -30.92593 -29.92097 -28.06794 -26.36854 -25.14375 -24.59429 -23.33095 -23.11732 -22.49059 -21.50514 -19.50986 -19.39337 -18.85089 -18.33993 -17.39209 -17.09269 -16.82455 -16.70017 -16.61215 -16.41482 -16.14796 -15.65912 -15.40620 -15.11304 -15.00062 -14.64970 -14.32052 -14.25071 -14.11685 -13.64819 -13.35293 -13.12322 -13.06582 -12.75479 -12.73819 -12.26181 -12.12078 -11.96384 -11.95100 -11.69925 -11.66058 -11.40102 -11.33090 -11.08949 -10.93946 -10.37482 -10.14296 -9.76327 -8.91198 -8.41369 -6.48834 -1.05856 -0.34801 0.55850 1.31972 1.34607 1.46553 1.57252 1.98199 2.09575 2.26666 2.27128 2.73270 2.91217 2.94303 3.11741 3.40869 3.51200 3.59344 3.71474 3.80671 4.00230 4.02824 4.10649 4.21473 4.30812 4.39913 4.40978 4.42195 4.57688 4.71862 4.73752 4.80033 4.87383 4.94148 4.96210 5.00750 5.07491 5.12501 5.21401 5.22158 5.29284 5.34593 5.48716 5.54604 6.03595 6.33667 6.48383 6.63247 6.73258 7.05977 7.21578 8.72997 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.004067 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.550886 B = 6883.053233 C = 9811.145055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.335 6.335 3 C 0.132 3.868 4 C -0.161 4.161 5 C -0.048 4.048 6 C 0.082 3.918 7 N -0.447 5.447 8 C 0.167 3.833 9 C -0.119 4.119 10 C -0.170 4.170 11 C -0.154 4.154 12 C -0.110 4.110 13 C -0.095 4.095 14 C 0.546 3.454 15 O -0.569 6.569 16 N -0.690 5.690 17 C 0.231 3.769 18 C -0.548 4.548 19 H 0.063 0.937 20 C 0.031 3.969 21 N -0.927 5.927 22 Si 0.933 3.067 23 H -0.265 1.265 24 H -0.272 1.272 25 H -0.261 1.261 26 C -0.045 4.045 27 C -0.186 4.186 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.161 0.839 39 H 0.409 0.591 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.273 0.727 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.353 12.011 1.420 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.249 6.249 3 C 0.086 3.914 4 C -0.181 4.181 5 C -0.067 4.067 6 C -0.040 4.040 7 N -0.155 5.155 8 C 0.014 3.986 9 C -0.137 4.137 10 C -0.207 4.207 11 C -0.191 4.191 12 C -0.131 4.131 13 C -0.106 4.106 14 C 0.334 3.666 15 O -0.451 6.451 16 N -0.339 5.339 17 C 0.108 3.892 18 C -0.586 4.586 19 H 0.082 0.918 20 C -0.170 4.170 21 N -0.566 5.566 22 Si 0.757 3.243 23 H -0.190 1.190 24 H -0.197 1.197 25 H -0.185 1.185 26 C -0.048 4.048 27 C -0.205 4.205 28 H 0.135 0.865 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.197 0.803 32 H 0.190 0.810 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.178 0.822 39 H 0.246 0.754 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.082 0.918 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.019 11.624 1.478 26.725 hybrid contribution 1.059 -1.492 -0.057 1.831 sum -22.960 10.132 1.421 25.136 Atomic orbital electron populations 1.23495 0.75687 1.05969 1.03033 1.86124 1.24218 1.26553 1.87995 1.19237 0.91627 0.85528 0.94974 1.21461 1.02266 0.90442 1.03908 1.20940 0.90739 0.99183 0.95794 1.19093 0.95349 0.86905 1.02695 1.67479 1.11916 1.25497 1.10620 1.20758 0.88250 0.94794 0.94778 1.20858 0.98462 0.92135 1.02262 1.23278 0.90144 1.04290 1.03006 1.23066 1.01807 1.02297 0.91952 1.22524 1.02830 0.90964 0.96790 1.20241 0.93218 0.93616 1.03521 1.18452 0.82630 0.88561 0.77001 1.90558 1.73824 1.28443 1.52282 1.45940 1.05229 1.11726 1.70998 1.19229 0.88947 0.84786 0.96252 1.21223 0.89561 0.95424 1.52364 0.91849 1.25527 0.94558 1.03363 0.93538 1.69966 1.00510 1.36042 1.50050 0.85918 0.78732 0.80075 0.79568 1.19016 1.19702 1.18504 1.18446 0.92098 0.94565 0.99662 1.21231 0.93292 0.98973 1.07002 0.86544 0.90720 0.90699 0.80346 0.81011 0.84496 0.88674 0.85799 0.85922 0.89616 0.82209 0.75449 0.96322 0.96526 0.91758 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.80 113.37 1.11 1.26 16 2 O -0.34 -8.43 10.48 -91.66 -0.96 -9.39 16 3 C 0.13 3.59 6.68 22.56 0.15 3.74 16 4 C -0.16 -3.08 8.94 22.13 0.20 -2.88 16 5 C -0.05 -1.01 9.96 22.35 0.22 -0.79 16 6 C 0.08 2.33 6.61 40.37 0.27 2.59 16 7 N -0.45 -12.15 10.18 -176.80 -1.80 -13.95 16 8 C 0.17 4.26 6.46 42.93 0.28 4.54 16 9 C -0.12 -2.21 6.19 -11.54 -0.07 -2.28 16 10 C -0.17 -2.73 9.78 30.62 0.30 -2.43 16 11 C -0.15 -2.42 10.24 30.62 0.31 -2.11 16 12 C -0.11 -3.12 8.83 22.67 0.20 -2.92 16 13 C -0.09 -3.31 5.94 -19.68 -0.12 -3.42 16 14 C 0.55 22.67 7.75 86.78 0.67 23.34 16 15 O -0.57 -27.10 13.52 -3.87 -0.05 -27.15 16 16 N -0.69 -28.79 5.50 -469.74 -2.59 -31.38 16 17 C 0.23 11.42 4.50 85.63 0.38 11.80 16 18 C -0.55 -29.99 9.83 25.60 0.25 -29.74 16 19 H 0.06 3.61 7.84 -2.91 -0.02 3.58 16 20 C 0.03 1.74 5.47 84.65 0.46 2.20 16 21 N -0.93 -54.77 13.96 21.45 0.30 -54.47 16 22 Si 0.93 43.89 27.47 68.60 1.88 45.77 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 26 C -0.04 -1.52 5.76 -21.10 -0.12 -1.64 16 27 C -0.19 -6.50 9.21 22.57 0.21 -6.29 16 28 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.07 0.65 7.64 -2.39 -0.02 0.63 16 30 H 0.07 0.65 7.64 -2.39 -0.02 0.63 16 31 H 0.18 1.79 6.23 -2.91 -0.02 1.77 16 32 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 1.69 6.34 -2.39 -0.02 1.68 16 35 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.16 3.90 4.68 -2.91 -0.01 3.88 16 39 H 0.41 14.79 6.49 -92.71 -0.60 14.19 16 40 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 41 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 42 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.15 6.04 4.98 -2.92 -0.01 6.03 16 Total: -1.00 -73.47 357.50 1.91 -71.56 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.42 Total: 24.03 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 4.71 Total: -5.02 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -4.09 Total: -99.80 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.01 Total: -36.54 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -73.47 1.91 -71.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634591.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.975 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds