Wall clock time and date at job start Tue Mar 31 2020 14:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35491 * 117.00025 * 2 1 4 4 N 1.31391 * 119.95453 * 5.36581 * 3 2 1 5 5 C 1.33664 * 122.57407 * 180.27602 * 4 3 2 6 6 C 1.47927 * 119.24387 * 179.74261 * 5 4 3 7 7 O 1.21555 * 120.00217 * 184.90238 * 6 5 4 8 8 N 1.34782 * 119.99972 * 4.90749 * 6 5 4 9 9 C 1.46498 * 120.00200 * 184.50213 * 8 6 5 10 10 C 1.52992 * 109.47111 * 174.92634 * 9 8 6 11 11 C 1.50696 * 115.55257 * 303.08655 * 10 9 8 12 12 H 1.07998 * 120.00092 * 116.40368 * 11 10 9 13 13 C 1.37876 * 119.99919 * 296.40511 * 11 10 9 14 14 N 1.31513 * 120.00085 * 169.26321 * 13 11 10 15 15 Si 1.86801 * 120.00188 * 349.26047 * 13 11 10 16 16 H 1.48508 * 109.46916 * 93.68864 * 15 13 11 17 17 H 1.48494 * 109.47446 * 213.68971 * 15 13 11 18 18 H 1.48500 * 109.46940 * 333.69407 * 15 13 11 19 19 C 1.53003 * 117.49877 * 157.41541 * 10 9 8 20 20 C 1.53004 * 117.49962 * 88.75900 * 10 9 8 21 21 C 1.38265 * 121.51686 * 359.46247 * 5 4 3 22 22 C 1.40694 * 118.64637 * 0.25963 * 21 5 4 23 23 C 1.40238 * 122.05078 * 179.97438 * 22 21 5 24 24 C 1.36316 * 119.48066 * 180.02562 * 23 22 21 25 25 C 1.39245 * 120.94331 * 0.02562 * 24 23 22 26 26 C 1.36369 * 121.05794 * 359.97438 * 25 24 23 27 27 C 1.40032 * 119.59193 * 0.02562 * 26 25 24 28 28 H 1.09011 * 109.46952 * 64.80807 * 1 2 3 29 29 H 1.08999 * 109.47330 * 184.80552 * 1 2 3 30 30 H 1.08995 * 109.47305 * 304.81346 * 1 2 3 31 31 H 0.97001 * 119.99529 * 4.77523 * 8 6 5 32 32 H 1.09001 * 109.47127 * 294.92951 * 9 8 6 33 33 H 1.09006 * 109.47224 * 54.92483 * 9 8 6 34 34 H 0.97002 * 120.00658 * 184.99909 * 14 13 11 35 35 H 1.08999 * 117.50023 * 0.02562 * 19 10 9 36 36 H 1.09009 * 117.49719 * 145.01810 * 19 10 9 37 37 H 1.09004 * 117.49955 * 214.97873 * 20 10 9 38 38 H 1.09002 * 117.49486 * 359.97438 * 20 10 9 39 39 H 1.07997 * 120.67596 * 180.23375 * 21 5 4 40 40 H 1.07998 * 120.25899 * 0.04774 * 23 22 21 41 41 H 1.07998 * 119.52371 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.47207 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.20060 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 7 1.3321 2.3063 0.1065 5 6 1.8836 3.5239 0.1068 6 6 1.0110 4.7125 0.2251 7 8 1.4874 5.8274 0.1374 8 7 -0.3123 4.5593 0.4302 9 6 -1.1912 5.7312 0.4489 10 6 -2.6464 5.2753 0.5715 11 6 -3.1241 4.3303 -0.5007 12 1 -3.4272 3.3270 -0.2403 13 6 -3.1742 4.7466 -1.8142 14 7 -3.3852 3.8722 -2.7735 15 14 -2.9423 6.5527 -2.2311 16 1 -1.5138 6.8086 -2.5461 17 1 -3.7787 6.9005 -3.4078 18 1 -3.3500 7.3848 -1.0706 19 6 -3.6568 6.2799 1.1291 20 6 -3.2119 5.0885 1.9809 21 6 3.2515 3.6977 0.0048 22 6 4.0698 2.5587 -0.1067 23 6 5.4648 2.6522 -0.2146 24 6 6.2073 1.5139 -0.3206 25 6 5.6002 0.2607 -0.3236 26 6 4.2463 0.1347 -0.2203 27 6 3.4514 1.2822 -0.1098 28 1 -0.3633 0.4375 -0.9300 29 1 -0.3634 -1.0240 0.0861 30 1 -0.3633 0.5867 0.8437 31 1 -0.6821 3.6734 0.5693 32 1 -0.9355 6.3635 1.2992 33 1 -1.0638 6.2957 -0.4749 34 1 -3.3484 4.1520 -3.7016 35 1 -3.2848 7.2657 1.4082 36 1 -4.6672 6.2571 0.7205 37 1 -3.9296 4.2823 2.1325 38 1 -2.5468 5.2900 2.8207 39 1 3.6830 4.6878 0.0102 40 1 5.9472 3.6184 -0.2135 41 1 7.2817 1.5851 -0.4041 42 1 6.2114 -0.6256 -0.4083 43 1 3.7899 -0.8442 -0.2245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431174482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:29 Heat of formation + Delta-G solvation = 9.752687 kcal Electronic energy + Delta-G solvation = -27265.551326 eV Core-core repulsion = 23470.025420 eV Total energy + Delta-G solvation = -3795.525906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17858 -39.16249 -38.65621 -37.16729 -36.50653 -33.47776 -32.53420 -32.17925 -31.45766 -29.67361 -27.38892 -26.90356 -25.43019 -23.94596 -23.76911 -22.07738 -21.65615 -20.55055 -19.37418 -18.35206 -18.07218 -17.26894 -16.75450 -16.08985 -16.06450 -15.69763 -15.15733 -15.11487 -14.72181 -14.47943 -14.13241 -13.93399 -13.73323 -13.66382 -13.26104 -12.97738 -12.86804 -12.43743 -12.19815 -12.03431 -11.99200 -11.86758 -11.28755 -11.10166 -11.06820 -10.71132 -10.58755 -10.30815 -10.15735 -9.87478 -9.62170 -9.35736 -9.28306 -9.12905 -8.80381 -8.47749 -8.29916 -7.86447 -6.16184 -4.18104 0.24545 0.60062 1.76630 2.59857 2.93222 3.29340 3.39063 3.42638 3.45110 3.61342 4.09607 4.22878 4.39773 4.46287 4.65120 4.68523 4.76659 4.90941 5.03436 5.15711 5.20370 5.31273 5.40912 5.53583 5.61063 5.68093 5.68533 5.72543 5.84079 5.89856 5.94866 6.12064 6.17896 6.21313 6.23178 6.30584 6.44697 6.50629 6.61178 6.69603 6.91548 7.05840 7.11399 7.17793 7.68229 7.72837 8.24040 8.41602 8.73730 8.84533 9.47050 10.93374 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.003661 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.183584 B = 7645.653327 C = 8153.254735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.304 6.304 3 C 0.363 3.637 4 N -0.521 5.521 5 C 0.114 3.886 6 C 0.560 3.440 7 O -0.552 6.552 8 N -0.673 5.673 9 C 0.151 3.849 10 C -0.018 4.018 11 C -0.490 4.490 12 H 0.078 0.922 13 C 0.087 3.913 14 N -0.890 5.890 15 Si 0.861 3.139 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.247 1.247 19 C -0.186 4.186 20 C -0.181 4.181 21 C -0.134 4.134 22 C -0.004 4.004 23 C -0.112 4.112 24 C -0.093 4.093 25 C -0.130 4.130 26 C -0.068 4.068 27 C -0.103 4.103 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.416 0.584 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.265 0.735 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.153 0.847 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.870 -7.638 6.380 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.209 6.209 3 C 0.170 3.830 4 N -0.249 5.249 5 C -0.011 4.011 6 C 0.344 3.656 7 O -0.431 6.431 8 N -0.321 5.321 9 C 0.028 3.972 10 C -0.019 4.019 11 C -0.527 4.527 12 H 0.096 0.904 13 C -0.117 4.117 14 N -0.526 5.526 15 Si 0.688 3.312 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.171 1.171 19 C -0.224 4.224 20 C -0.218 4.218 21 C -0.156 4.156 22 C -0.008 4.008 23 C -0.130 4.130 24 C -0.112 4.112 25 C -0.148 4.148 26 C -0.087 4.087 27 C -0.106 4.106 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.254 0.746 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.211 -7.062 6.181 17.873 hybrid contribution 0.451 0.668 -0.518 0.958 sum 15.661 -6.395 5.663 17.839 Atomic orbital electron populations 1.23043 0.75723 1.03295 1.03985 1.86123 1.23977 1.23862 1.86937 1.19810 0.87985 0.85018 0.90221 1.67072 1.40494 0.97879 1.19492 1.20605 0.91938 0.90031 0.98533 1.17823 0.82705 0.87119 0.77954 1.90743 1.75079 1.24669 1.52616 1.45679 1.05643 1.12396 1.68406 1.21114 0.89556 0.86455 1.00084 1.19606 0.89250 0.99025 0.94003 1.20164 1.44643 0.98393 0.89454 0.90413 1.24881 0.93440 0.97181 0.96181 1.69867 1.48540 1.34280 0.99915 0.87095 0.78305 0.86962 0.78856 1.20345 1.21772 1.17076 1.23031 1.00938 0.92853 1.05558 1.22828 1.04066 1.00746 0.94156 1.21977 0.92753 0.99414 1.01463 1.17945 0.94251 0.91406 0.97236 1.20967 0.91655 0.99534 1.00814 1.21005 1.00293 0.92353 0.97573 1.20930 0.94756 0.97825 1.01337 1.20976 0.93607 0.97799 0.96355 1.18093 0.90988 0.94691 1.06838 0.91251 0.88389 0.91302 0.74633 0.93231 0.92150 0.92484 0.91120 0.89289 0.89612 0.90889 0.82935 0.84627 0.85432 0.85459 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.50 101.05 1.06 1.50 16 2 O -0.30 -4.20 9.74 -18.17 -0.18 -4.37 16 3 C 0.36 5.58 7.54 -16.56 -0.12 5.46 16 4 N -0.52 -9.07 8.24 -9.60 -0.08 -9.15 16 5 C 0.11 2.05 6.73 -83.09 -0.56 1.49 16 6 C 0.56 11.56 7.79 -12.29 -0.10 11.46 16 7 O -0.55 -12.40 16.28 5.32 0.09 -12.32 16 8 N -0.67 -14.16 5.34 -61.22 -0.33 -14.48 16 9 C 0.15 3.32 5.20 -4.05 -0.02 3.30 16 10 C -0.02 -0.39 0.93 -155.66 -0.14 -0.54 16 11 C -0.49 -12.85 8.87 -34.44 -0.31 -13.15 16 12 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 13 C 0.09 2.41 5.45 -17.82 -0.10 2.32 16 14 N -0.89 -26.18 13.95 55.43 0.77 -25.41 16 15 Si 0.86 21.37 25.14 -169.99 -4.27 17.09 16 16 H -0.28 -7.09 6.99 56.52 0.40 -6.70 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.25 -5.73 5.70 56.52 0.32 -5.41 16 19 C -0.19 -3.78 7.99 -26.69 -0.21 -3.99 16 20 C -0.18 -3.48 9.94 -26.69 -0.27 -3.74 16 21 C -0.13 -2.06 9.40 -38.64 -0.36 -2.42 16 22 C 0.00 -0.05 5.74 -106.84 -0.61 -0.66 16 23 C -0.11 -1.14 9.81 -39.52 -0.39 -1.52 16 24 C -0.09 -0.78 9.95 -39.90 -0.40 -1.18 16 25 C -0.13 -1.12 9.95 -39.88 -0.40 -1.52 16 26 C -0.07 -0.72 9.58 -39.58 -0.38 -1.10 16 27 C -0.10 -1.40 5.76 -106.67 -0.61 -2.02 16 28 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 31 H 0.42 8.60 7.54 -40.82 -0.31 8.30 16 32 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.06 1.46 5.21 -51.93 -0.27 1.19 16 34 H 0.27 7.46 8.32 -40.82 -0.34 7.12 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 37 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.15 2.18 7.60 -52.49 -0.40 1.78 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.14 1.27 7.65 -52.48 -0.40 0.87 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -31.49 363.02 -8.10 -39.60 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.66 Total: 9.90 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.92 Total: -6.33 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.37 Total: -49.04 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.09 Total: -16.69 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.27 Total: 17.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.49 -8.10 -39.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.350 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds