Wall clock time and date at job start Tue Mar 31 2020 14:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35491 * 117.00025 * 2 1 4 4 N 1.31391 * 119.95453 * 5.36581 * 3 2 1 5 5 C 1.33664 * 122.57407 * 180.27602 * 4 3 2 6 6 C 1.47927 * 119.24387 * 179.74261 * 5 4 3 7 7 O 1.21555 * 120.00217 * 184.90238 * 6 5 4 8 8 N 1.34782 * 119.99972 * 4.90749 * 6 5 4 9 9 C 1.46498 * 120.00200 * 184.50213 * 8 6 5 10 10 C 1.52992 * 109.47111 * 174.92634 * 9 8 6 11 11 C 1.50696 * 115.55257 * 303.08655 * 10 9 8 12 12 H 1.07998 * 120.00092 * 116.40368 * 11 10 9 13 13 C 1.37876 * 119.99919 * 296.40511 * 11 10 9 14 14 N 1.31513 * 120.00085 * 169.26321 * 13 11 10 15 15 Si 1.86801 * 120.00188 * 349.26047 * 13 11 10 16 16 H 1.48508 * 109.46916 * 93.68864 * 15 13 11 17 17 H 1.48494 * 109.47446 * 213.68971 * 15 13 11 18 18 H 1.48500 * 109.46940 * 333.69407 * 15 13 11 19 19 C 1.53003 * 117.49877 * 157.41541 * 10 9 8 20 20 C 1.53004 * 117.49962 * 88.75900 * 10 9 8 21 21 C 1.38265 * 121.51686 * 359.46247 * 5 4 3 22 22 C 1.40694 * 118.64637 * 0.25963 * 21 5 4 23 23 C 1.40238 * 122.05078 * 179.97438 * 22 21 5 24 24 C 1.36316 * 119.48066 * 180.02562 * 23 22 21 25 25 C 1.39245 * 120.94331 * 0.02562 * 24 23 22 26 26 C 1.36369 * 121.05794 * 359.97438 * 25 24 23 27 27 C 1.40032 * 119.59193 * 0.02562 * 26 25 24 28 28 H 1.09011 * 109.46952 * 64.80807 * 1 2 3 29 29 H 1.08999 * 109.47330 * 184.80552 * 1 2 3 30 30 H 1.08995 * 109.47305 * 304.81346 * 1 2 3 31 31 H 0.97001 * 119.99529 * 4.77523 * 8 6 5 32 32 H 1.09001 * 109.47127 * 294.92951 * 9 8 6 33 33 H 1.09006 * 109.47224 * 54.92483 * 9 8 6 34 34 H 0.97002 * 120.00658 * 184.99909 * 14 13 11 35 35 H 1.08999 * 117.50023 * 0.02562 * 19 10 9 36 36 H 1.09009 * 117.49719 * 145.01810 * 19 10 9 37 37 H 1.09004 * 117.49955 * 214.97873 * 20 10 9 38 38 H 1.09002 * 117.49486 * 359.97438 * 20 10 9 39 39 H 1.07997 * 120.67596 * 180.23375 * 21 5 4 40 40 H 1.07998 * 120.25899 * 0.04774 * 23 22 21 41 41 H 1.07998 * 119.52371 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.47207 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.20060 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 7 1.3321 2.3063 0.1065 5 6 1.8836 3.5239 0.1068 6 6 1.0110 4.7125 0.2251 7 8 1.4874 5.8274 0.1374 8 7 -0.3123 4.5593 0.4302 9 6 -1.1912 5.7312 0.4489 10 6 -2.6464 5.2753 0.5715 11 6 -3.1241 4.3303 -0.5007 12 1 -3.4272 3.3270 -0.2403 13 6 -3.1742 4.7466 -1.8142 14 7 -3.3852 3.8722 -2.7735 15 14 -2.9423 6.5527 -2.2311 16 1 -1.5138 6.8086 -2.5461 17 1 -3.7787 6.9005 -3.4078 18 1 -3.3500 7.3848 -1.0706 19 6 -3.6568 6.2799 1.1291 20 6 -3.2119 5.0885 1.9809 21 6 3.2515 3.6977 0.0048 22 6 4.0698 2.5587 -0.1067 23 6 5.4648 2.6522 -0.2146 24 6 6.2073 1.5139 -0.3206 25 6 5.6002 0.2607 -0.3236 26 6 4.2463 0.1347 -0.2203 27 6 3.4514 1.2822 -0.1098 28 1 -0.3633 0.4375 -0.9300 29 1 -0.3634 -1.0240 0.0861 30 1 -0.3633 0.5867 0.8437 31 1 -0.6821 3.6734 0.5693 32 1 -0.9355 6.3635 1.2992 33 1 -1.0638 6.2957 -0.4749 34 1 -3.3484 4.1520 -3.7016 35 1 -3.2848 7.2657 1.4082 36 1 -4.6672 6.2571 0.7205 37 1 -3.9296 4.2823 2.1325 38 1 -2.5468 5.2900 2.8207 39 1 3.6830 4.6878 0.0102 40 1 5.9472 3.6184 -0.2135 41 1 7.2817 1.5851 -0.4041 42 1 6.2114 -0.6256 -0.4083 43 1 3.7899 -0.8442 -0.2245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431174482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:28 Heat of formation + Delta-G solvation = -12.020168 kcal Electronic energy + Delta-G solvation = -27266.495468 eV Core-core repulsion = 23470.025420 eV Total energy + Delta-G solvation = -3796.470048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25748 -40.68589 -39.63919 -38.78219 -37.70925 -35.09999 -34.28725 -33.51757 -32.42992 -30.75065 -28.75054 -28.28576 -27.30332 -25.18579 -24.72458 -23.26280 -23.05479 -21.93362 -21.16891 -19.72690 -19.16919 -18.48118 -18.28498 -17.42714 -17.24738 -16.97654 -16.73096 -16.61329 -16.14803 -15.81374 -15.38989 -15.01188 -14.98442 -14.85006 -14.75019 -14.61206 -14.21681 -14.03168 -13.85722 -13.14647 -13.02657 -12.92580 -12.78210 -12.72241 -12.26102 -12.20195 -12.12715 -12.11093 -11.66402 -11.47525 -11.02061 -10.85333 -10.73640 -10.67065 -10.36712 -10.18111 -9.96968 -8.91840 -8.31697 -6.34162 -0.79885 -0.36364 0.80824 1.28856 1.34758 1.39435 1.45139 1.86219 2.11130 2.28914 2.32980 2.90175 2.98944 3.04226 3.33567 3.53657 3.70584 3.75471 3.93793 3.99826 4.12404 4.26764 4.28962 4.35433 4.41023 4.42766 4.44409 4.50240 4.63144 4.66680 4.76363 4.77892 4.90788 4.91245 5.03416 5.04296 5.23264 5.27328 5.40190 5.44595 5.45902 5.52212 5.68084 5.85994 6.01657 6.28081 6.42947 6.69044 6.74994 7.12641 7.32818 8.81097 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.003661 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.183584 B = 7645.653327 C = 8153.254735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.300 6.300 3 C 0.349 3.651 4 N -0.548 5.548 5 C 0.072 3.928 6 C 0.558 3.442 7 O -0.578 6.578 8 N -0.679 5.679 9 C 0.157 3.843 10 C -0.047 4.047 11 C -0.474 4.474 12 H 0.044 0.956 13 C 0.037 3.963 14 N -0.937 5.937 15 Si 0.909 3.091 16 H -0.293 1.293 17 H -0.294 1.294 18 H -0.217 1.217 19 C -0.177 4.177 20 C -0.156 4.156 21 C -0.118 4.118 22 C -0.025 4.025 23 C -0.114 4.114 24 C -0.081 4.081 25 C -0.108 4.108 26 C -0.084 4.084 27 C -0.112 4.112 28 H 0.042 0.958 29 H 0.134 0.866 30 H 0.058 0.942 31 H 0.415 0.585 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.927 -8.021 7.770 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.205 6.205 3 C 0.155 3.845 4 N -0.277 5.277 5 C -0.051 4.051 6 C 0.344 3.656 7 O -0.460 6.460 8 N -0.327 5.327 9 C 0.033 3.967 10 C -0.048 4.048 11 C -0.512 4.512 12 H 0.062 0.938 13 C -0.162 4.162 14 N -0.576 5.576 15 Si 0.736 3.264 16 H -0.220 1.220 17 H -0.221 1.221 18 H -0.139 1.139 19 C -0.215 4.215 20 C -0.193 4.193 21 C -0.140 4.140 22 C -0.029 4.029 23 C -0.132 4.132 24 C -0.099 4.099 25 C -0.126 4.126 26 C -0.104 4.104 27 C -0.115 4.115 28 H 0.061 0.939 29 H 0.152 0.848 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.187 0.813 42 H 0.184 0.816 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.254 -7.432 7.605 21.126 hybrid contribution -0.277 0.585 -0.913 1.119 sum 17.977 -6.847 6.691 20.367 Atomic orbital electron populations 1.23082 0.75542 1.05067 1.02087 1.86130 1.24101 1.23252 1.86990 1.20153 0.89052 0.84777 0.90533 1.66884 1.41571 0.98292 1.20948 1.20261 0.92447 0.89426 1.02998 1.18262 0.82677 0.87839 0.76818 1.90693 1.75496 1.25881 1.53930 1.45709 1.05998 1.12075 1.68881 1.21004 0.89333 0.86797 0.99553 1.19460 0.89871 1.00443 0.95014 1.20287 1.42696 0.97718 0.90473 0.93802 1.25533 0.93923 1.00354 0.96385 1.69991 1.51407 1.36043 1.00144 0.86330 0.77057 0.83609 0.79450 1.22011 1.22100 1.13885 1.23081 0.99735 0.94036 1.04659 1.22880 1.03344 1.00052 0.93045 1.22138 0.91982 1.00549 0.99367 1.18174 0.95720 0.90522 0.98506 1.21301 0.90084 1.01636 1.00201 1.21528 1.02253 0.91353 0.94788 1.21458 0.94021 0.99525 0.97584 1.21203 0.94600 0.97264 0.97322 1.18357 0.90350 0.96040 1.06719 0.93907 0.84816 0.92334 0.74825 0.91294 0.94671 0.92805 0.88648 0.89808 0.89591 0.88183 0.82437 0.82441 0.81348 0.81642 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.99 10.50 113.37 1.19 2.18 16 2 O -0.30 -8.47 9.74 -87.91 -0.86 -9.32 16 3 C 0.35 11.08 7.54 85.53 0.64 11.72 16 4 N -0.55 -20.26 8.24 -297.68 -2.45 -22.71 16 5 C 0.07 2.73 6.73 41.44 0.28 3.01 16 6 C 0.56 24.09 7.79 86.81 0.68 24.77 16 7 O -0.58 -26.87 16.28 -3.89 -0.06 -26.93 16 8 N -0.68 -29.70 5.34 -465.88 -2.49 -32.19 16 9 C 0.16 6.91 5.20 86.38 0.45 7.36 16 10 C -0.05 -2.07 0.93 -52.93 -0.05 -2.12 16 11 C -0.47 -25.69 8.87 25.60 0.23 -25.46 16 12 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 13 C 0.04 2.12 5.45 84.65 0.46 2.59 16 14 N -0.94 -57.76 13.95 21.45 0.30 -57.46 16 15 Si 0.91 45.08 25.14 68.60 1.72 46.80 16 16 H -0.29 -15.19 6.99 99.48 0.70 -14.49 16 17 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 18 H -0.22 -9.54 5.70 99.48 0.57 -8.98 16 19 C -0.18 -6.80 7.99 30.62 0.24 -6.56 16 20 C -0.16 -5.72 9.94 30.62 0.30 -5.41 16 21 C -0.12 -3.69 9.40 22.88 0.22 -3.48 16 22 C -0.02 -0.64 5.74 -21.30 -0.12 -0.76 16 23 C -0.11 -1.95 9.81 22.31 0.22 -1.73 16 24 C -0.08 -0.94 9.95 22.06 0.22 -0.72 16 25 C -0.11 -1.34 9.95 22.08 0.22 -1.12 16 26 C -0.08 -1.59 9.58 22.27 0.21 -1.37 16 27 C -0.11 -2.97 5.76 -21.19 -0.12 -3.09 16 28 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.06 1.67 7.89 -2.39 -0.02 1.65 16 31 H 0.41 18.17 7.54 -92.71 -0.70 17.47 16 32 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 33 H 0.04 1.72 5.21 -2.38 -0.01 1.71 16 34 H 0.26 15.53 8.32 -92.71 -0.77 14.76 16 35 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 37 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.16 4.56 7.60 -2.91 -0.02 4.54 16 40 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.15 2.40 7.65 -2.91 -0.02 2.37 16 Total: -1.00 -73.07 363.02 1.62 -71.45 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.19 Total: 30.57 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.27 Total: -0.20 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.64 Total: -112.36 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -0.92 Total: -36.25 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.72 Total: 46.80 kcal Total: -73.07 1.62 -71.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431174482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.430 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds