Wall clock time and date at job start Tue Mar 31 2020 14:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35506 * 117.00323 * 2 1 4 4 C 1.39166 * 119.52722 * 180.02562 * 3 2 1 5 5 C 1.37951 * 119.26143 * 179.97438 * 4 3 2 6 6 C 1.40288 * 118.35983 * 359.97438 * 5 4 3 7 7 C 1.47616 * 120.49859 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46722 * 324.72200 * 10 9 7 12 12 C 1.52999 * 109.47091 * 204.72183 * 10 9 7 13 13 C 1.50705 * 109.47160 * 64.99590 * 12 10 9 14 14 H 1.07999 * 119.99750 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99884 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00278 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99833 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46907 * 120.00470 * 17 15 13 20 20 H 1.48501 * 109.46956 * 240.00457 * 17 15 13 21 21 C 1.50697 * 109.47063 * 84.72117 * 10 9 7 22 22 C 1.38225 * 120.00280 * 39.72688 * 21 10 9 23 23 C 1.38238 * 120.00138 * 179.80540 * 22 21 10 24 24 C 1.38234 * 120.00045 * 0.40737 * 23 22 21 25 25 C 1.38241 * 119.99694 * 359.84786 * 24 23 22 26 26 C 1.38233 * 120.00167 * 359.95922 * 25 24 23 27 27 C 1.39515 * 119.00096 * 0.27696 * 6 5 4 28 28 N 1.31669 * 120.62742 * 359.42947 * 27 6 5 29 29 H 1.09000 * 109.46781 * 300.00533 * 1 2 3 30 30 H 1.08999 * 109.46946 * 60.00017 * 1 2 3 31 31 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.36727 * 359.97438 * 4 3 2 33 33 H 1.08006 * 120.82188 * 179.97438 * 5 4 3 34 34 H 0.97005 * 120.00161 * 359.72220 * 9 7 6 35 35 H 1.08996 * 109.47238 * 184.99506 * 12 10 9 36 36 H 1.09004 * 109.47119 * 305.00046 * 12 10 9 37 37 H 0.96997 * 120.00295 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.00179 * 359.97438 * 22 21 10 39 39 H 1.08002 * 120.00077 * 180.22577 * 23 22 21 40 40 H 1.07993 * 120.00430 * 179.83398 * 24 23 22 41 41 H 1.07999 * 119.99589 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00096 * 180.02562 * 26 25 24 43 43 H 1.08004 * 119.68794 * 179.72534 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2525 3.6512 -0.0016 7 6 3.8669 4.9934 -0.0028 8 8 5.0774 5.1078 -0.0037 9 7 3.0862 6.0919 -0.0027 10 6 3.6960 7.4240 -0.0044 11 1 4.6107 7.4055 0.5881 12 6 2.7175 8.4335 0.5991 13 6 2.4863 8.1027 2.0511 14 1 2.9875 7.2572 2.4987 15 6 1.6358 8.8800 2.8083 16 7 1.0259 9.9099 2.2634 17 14 1.3498 8.4703 4.6082 18 1 2.1479 7.2734 4.9764 19 1 1.7664 9.6207 5.4500 20 1 -0.0920 8.1916 4.8294 21 6 4.0223 7.8252 -1.4199 22 6 3.1433 7.5251 -2.4435 23 6 3.4408 7.8967 -3.7414 24 6 4.6213 8.5610 -4.0167 25 6 5.5029 8.8566 -2.9937 26 6 5.2035 8.4885 -1.6953 27 6 1.8647 3.5077 0.0043 28 7 1.3140 2.3118 -0.0009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0210 0.3618 -0.0005 33 1 5.1325 2.5776 -0.0011 34 1 2.1204 6.0006 -0.0060 35 1 3.1344 9.4373 0.5172 36 1 1.7707 8.3883 0.0610 37 1 0.4273 10.4566 2.7960 38 1 2.2227 7.0026 -2.2290 39 1 2.7522 7.6654 -4.5406 40 1 4.8551 8.8490 -5.0310 41 1 6.4254 9.3752 -3.2089 42 1 5.8921 8.7197 -0.8961 43 1 1.2362 4.3860 0.0085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439669785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:33 Heat of formation + Delta-G solvation = -16.610289 kcal Electronic energy + Delta-G solvation = -26786.020510 eV Core-core repulsion = 22989.351419 eV Total energy + Delta-G solvation = -3796.669091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87970 -39.61291 -38.58453 -37.59938 -35.27268 -32.86450 -32.59164 -31.78256 -30.56127 -30.25656 -28.79285 -27.50464 -25.12209 -24.11029 -23.24381 -22.31500 -21.96968 -20.70437 -19.84110 -18.63398 -17.56072 -17.25908 -16.67141 -16.21992 -16.17528 -15.46110 -14.96216 -14.89332 -14.57389 -14.48170 -14.34169 -14.07836 -13.71255 -13.38528 -13.12511 -13.02382 -12.80301 -12.69813 -12.52684 -12.13017 -12.06358 -11.59521 -11.35725 -11.15422 -10.96094 -10.76276 -10.61177 -10.49904 -10.07238 -10.03262 -9.81171 -9.46303 -9.29867 -8.74224 -8.55783 -8.48434 -8.43929 -8.20388 -6.11674 -4.15330 0.70898 1.09216 1.76275 1.79110 2.86064 3.08058 3.24830 3.33757 3.38101 3.59855 3.89206 4.08402 4.22140 4.38133 4.75069 4.81616 4.93986 5.04553 5.12157 5.16944 5.25224 5.25720 5.26483 5.36296 5.41917 5.47240 5.52208 5.70620 5.89000 5.92210 6.02091 6.16404 6.20627 6.33692 6.41905 6.54631 6.81706 6.83336 6.84414 6.97964 7.08153 7.38896 7.46286 7.57956 7.61255 7.85056 8.02051 8.22651 8.63661 8.91011 9.50290 10.98771 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007564 B = 0.004587 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.844644 B = 6102.173818 C = 8752.851449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.307 6.307 3 C 0.334 3.666 4 C -0.199 4.199 5 C 0.014 3.986 6 C -0.215 4.215 7 C 0.563 3.437 8 O -0.545 6.545 9 N -0.694 5.694 10 C 0.185 3.815 11 H 0.089 0.911 12 C 0.023 3.977 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C -0.072 4.072 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.123 4.123 26 C -0.107 4.107 27 C 0.179 3.821 28 N -0.542 5.542 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.399 0.601 35 H 0.036 0.964 36 H 0.025 0.975 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -13.576 -9.201 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.213 6.213 3 C 0.155 3.845 4 C -0.219 4.219 5 C -0.012 4.012 6 C -0.221 4.221 7 C 0.349 3.651 8 O -0.424 6.424 9 N -0.343 5.343 10 C 0.081 3.919 11 H 0.107 0.893 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.073 4.073 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.126 4.126 27 C 0.022 3.978 28 N -0.266 5.266 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.235 0.765 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.402 -13.692 -9.144 16.525 hybrid contribution -0.199 0.087 1.030 1.053 sum 1.202 -13.606 -8.115 15.887 Atomic orbital electron populations 1.22904 0.76951 1.02971 1.02852 1.86198 1.23205 1.24636 1.87282 1.20079 0.89498 0.84751 0.90170 1.21009 0.91780 0.99530 1.09614 1.21530 1.01309 0.89702 0.88649 1.20974 0.94961 0.95338 1.10783 1.17835 0.86777 0.83728 0.76758 1.90742 1.13783 1.86978 1.50934 1.45903 1.09949 1.05572 1.72853 1.20293 0.99245 0.81900 0.90455 0.89271 1.19409 0.93175 0.93246 0.95590 1.21173 1.26693 1.13282 0.94804 0.92284 1.24973 0.95750 0.94919 0.98376 1.69963 1.29488 1.17176 1.36332 0.86566 0.77932 0.78458 0.85271 1.19720 1.20958 1.20996 1.20523 0.93789 0.96543 0.96425 1.20901 0.99179 1.00123 0.92432 1.21041 0.97177 0.99527 0.96526 1.21000 0.95093 1.00488 0.98683 1.21047 0.99388 1.00577 0.93063 1.21018 0.96520 0.98494 0.96563 1.22729 0.91852 0.93915 0.89347 1.67320 1.40511 0.98626 1.20122 0.91989 0.92062 0.88617 0.83597 0.82867 0.76515 0.94592 0.95656 0.92890 0.86609 0.86734 0.86836 0.86584 0.86125 0.81602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.37 101.05 1.05 1.38 16 2 O -0.31 -3.51 10.46 -18.21 -0.19 -3.70 16 3 C 0.33 4.25 7.49 -16.96 -0.13 4.12 16 4 C -0.20 -2.30 10.02 -39.34 -0.39 -2.69 16 5 C 0.01 0.18 9.70 -38.92 -0.38 -0.20 16 6 C -0.21 -3.14 5.89 -104.82 -0.62 -3.76 16 7 C 0.56 9.88 7.73 -12.44 -0.10 9.78 16 8 O -0.55 -11.14 16.08 5.29 0.09 -11.06 16 9 N -0.69 -12.17 3.97 -55.95 -0.22 -12.39 16 10 C 0.18 3.66 2.11 -69.08 -0.15 3.52 16 11 H 0.09 1.93 7.45 -51.93 -0.39 1.54 16 12 C 0.02 0.54 4.50 -27.88 -0.13 0.41 16 13 C -0.52 -13.50 8.84 -34.44 -0.30 -13.81 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 17 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.07 -1.30 4.91 -104.63 -0.51 -1.81 16 22 C -0.11 -1.78 9.33 -39.59 -0.37 -2.15 16 23 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.13 -1.89 10.05 -39.58 -0.40 -2.28 16 25 C -0.12 -1.82 10.05 -39.58 -0.40 -2.21 16 26 C -0.11 -1.83 9.67 -39.58 -0.38 -2.22 16 27 C 0.18 2.41 10.71 -17.15 -0.18 2.23 16 28 N -0.54 -7.30 9.18 -12.96 -0.12 -7.42 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.15 1.84 7.73 -52.48 -0.41 1.44 16 34 H 0.40 6.32 6.66 -40.82 -0.27 6.05 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.12 1.77 7.71 -52.49 -0.40 1.36 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 43 H 0.17 1.96 6.41 -52.48 -0.34 1.63 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -31.59 373.60 -8.55 -40.14 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.57 Total: 7.76 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.88 Total: -10.35 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.40 Total: -44.23 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.11 Total: -14.76 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.59 -8.55 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439669785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.528 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds