Wall clock time and date at job start Tue Mar 31 2020 14:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35506 * 117.00323 * 2 1 4 4 C 1.39166 * 119.52722 * 180.02562 * 3 2 1 5 5 C 1.37951 * 119.26143 * 179.97438 * 4 3 2 6 6 C 1.40288 * 118.35983 * 359.97438 * 5 4 3 7 7 C 1.47616 * 120.49859 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99812 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46722 * 324.72200 * 10 9 7 12 12 C 1.52999 * 109.47091 * 204.72183 * 10 9 7 13 13 C 1.50705 * 109.47160 * 64.99590 * 12 10 9 14 14 H 1.07999 * 119.99750 * 0.02562 * 13 12 10 15 15 C 1.37874 * 119.99884 * 179.97438 * 13 12 10 16 16 N 1.31516 * 120.00278 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99833 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46907 * 120.00470 * 17 15 13 20 20 H 1.48501 * 109.46956 * 240.00457 * 17 15 13 21 21 C 1.50697 * 109.47063 * 84.72117 * 10 9 7 22 22 C 1.38225 * 120.00280 * 39.72688 * 21 10 9 23 23 C 1.38238 * 120.00138 * 179.80540 * 22 21 10 24 24 C 1.38234 * 120.00045 * 0.40737 * 23 22 21 25 25 C 1.38241 * 119.99694 * 359.84786 * 24 23 22 26 26 C 1.38233 * 120.00167 * 359.95922 * 25 24 23 27 27 C 1.39515 * 119.00096 * 0.27696 * 6 5 4 28 28 N 1.31669 * 120.62742 * 359.42947 * 27 6 5 29 29 H 1.09000 * 109.46781 * 300.00533 * 1 2 3 30 30 H 1.08999 * 109.46946 * 60.00017 * 1 2 3 31 31 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.36727 * 359.97438 * 4 3 2 33 33 H 1.08006 * 120.82188 * 179.97438 * 5 4 3 34 34 H 0.97005 * 120.00161 * 359.72220 * 9 7 6 35 35 H 1.08996 * 109.47238 * 184.99506 * 12 10 9 36 36 H 1.09004 * 109.47119 * 305.00046 * 12 10 9 37 37 H 0.96997 * 120.00295 * 179.97438 * 16 15 13 38 38 H 1.08000 * 120.00179 * 359.97438 * 22 21 10 39 39 H 1.08002 * 120.00077 * 180.22577 * 23 22 21 40 40 H 1.07993 * 120.00430 * 179.83398 * 24 23 22 41 41 H 1.07999 * 119.99589 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.00096 * 180.02562 * 26 25 24 43 43 H 1.08004 * 119.68794 * 179.72534 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4345 1.2686 -0.0005 5 6 4.0552 2.5006 -0.0011 6 6 3.2525 3.6512 -0.0016 7 6 3.8669 4.9934 -0.0028 8 8 5.0774 5.1078 -0.0037 9 7 3.0862 6.0919 -0.0027 10 6 3.6960 7.4240 -0.0044 11 1 4.6107 7.4055 0.5881 12 6 2.7175 8.4335 0.5991 13 6 2.4863 8.1027 2.0511 14 1 2.9875 7.2572 2.4987 15 6 1.6358 8.8800 2.8083 16 7 1.0259 9.9099 2.2634 17 14 1.3498 8.4703 4.6082 18 1 2.1479 7.2734 4.9764 19 1 1.7664 9.6207 5.4500 20 1 -0.0920 8.1916 4.8294 21 6 4.0223 7.8252 -1.4199 22 6 3.1433 7.5251 -2.4435 23 6 3.4408 7.8967 -3.7414 24 6 4.6213 8.5610 -4.0167 25 6 5.5029 8.8566 -2.9937 26 6 5.2035 8.4885 -1.6953 27 6 1.8647 3.5077 0.0043 28 7 1.3140 2.3118 -0.0009 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0210 0.3618 -0.0005 33 1 5.1325 2.5776 -0.0011 34 1 2.1204 6.0006 -0.0060 35 1 3.1344 9.4373 0.5172 36 1 1.7707 8.3883 0.0610 37 1 0.4273 10.4566 2.7960 38 1 2.2227 7.0026 -2.2290 39 1 2.7522 7.6654 -4.5406 40 1 4.8551 8.8490 -5.0310 41 1 6.4254 9.3752 -3.2089 42 1 5.8921 8.7197 -0.8961 43 1 1.2362 4.3860 0.0085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439669785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:32 Heat of formation + Delta-G solvation = -36.128645 kcal Electronic energy + Delta-G solvation = -26786.866890 eV Core-core repulsion = 22989.351419 eV Total energy + Delta-G solvation = -3797.515470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.94252 -40.90544 -39.77310 -38.65737 -36.83281 -34.77115 -33.63712 -33.12756 -31.74843 -31.40213 -30.48914 -28.34821 -26.78265 -25.26548 -24.31365 -23.77370 -23.33711 -22.02584 -21.25792 -19.59522 -18.91870 -18.51248 -18.22739 -17.58607 -17.10516 -16.86078 -16.50480 -16.25823 -15.96448 -15.61757 -15.47782 -15.14327 -14.99093 -14.55151 -14.35337 -14.21256 -14.16126 -14.01048 -13.89524 -13.65269 -13.42469 -12.92875 -12.77629 -12.63900 -12.47615 -12.21854 -12.13128 -11.87051 -11.59588 -11.33118 -11.24725 -11.08468 -10.70934 -10.56826 -10.08651 -9.74691 -9.63523 -9.50845 -8.20033 -6.29701 -0.37182 0.09833 0.51991 0.57215 1.37866 1.41148 1.51904 1.83523 1.99159 2.23695 2.39894 2.75361 2.98272 3.11414 3.14674 3.66561 3.78619 3.94280 4.00701 4.04326 4.06774 4.22106 4.33478 4.43791 4.44268 4.44845 4.56656 4.65806 4.68944 4.76525 4.79301 4.80614 5.04864 5.13156 5.20319 5.21805 5.27038 5.44174 5.59693 5.62308 5.65482 5.78768 5.90027 6.06428 6.16653 6.21215 6.58005 6.63431 6.83298 7.24074 7.39430 8.90786 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007564 B = 0.004587 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.844644 B = 6102.173818 C = 8752.851449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.329 3.671 4 C -0.189 4.189 5 C 0.013 3.987 6 C -0.231 4.231 7 C 0.565 3.435 8 O -0.580 6.580 9 N -0.691 5.691 10 C 0.201 3.799 11 H 0.062 0.938 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.014 3.986 16 N -0.924 5.924 17 Si 0.952 3.048 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.276 1.276 21 C -0.097 4.097 22 C -0.122 4.122 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.132 4.132 27 C 0.181 3.819 28 N -0.551 5.551 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.407 0.593 35 H 0.006 0.994 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.114 0.886 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -15.318 -10.322 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.215 6.215 3 C 0.151 3.849 4 C -0.209 4.209 5 C -0.012 4.012 6 C -0.237 4.237 7 C 0.353 3.647 8 O -0.462 6.462 9 N -0.340 5.340 10 C 0.096 3.904 11 H 0.080 0.920 12 C 0.000 4.000 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.564 5.564 17 Si 0.778 3.222 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.201 1.201 21 C -0.099 4.099 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.150 4.150 27 C 0.024 3.976 28 N -0.275 5.275 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.193 0.807 33 H 0.177 0.823 34 H 0.243 0.757 35 H 0.025 0.975 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.132 0.868 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.035 -15.457 -10.268 18.586 hybrid contribution -0.107 0.565 1.311 1.432 sum 0.927 -14.892 -8.957 17.403 Atomic orbital electron populations 1.23148 0.75468 1.05006 1.02536 1.86210 1.24669 1.23782 1.86820 1.20393 0.90143 0.84991 0.89411 1.21259 0.91604 0.99955 1.08072 1.21660 1.01599 0.89696 0.88286 1.20761 0.95634 0.94027 1.13289 1.18217 0.86313 0.84564 0.75636 1.90712 1.15243 1.87560 1.52653 1.45778 1.10352 1.04963 1.72890 1.19778 0.96915 0.82149 0.91546 0.91958 1.19148 0.93286 0.92847 0.94749 1.21426 1.26228 1.12894 0.96063 0.92825 1.25716 0.95621 0.94805 1.02337 1.70067 1.30285 1.18178 1.37888 0.85590 0.78048 0.78119 0.80432 1.19492 1.20786 1.20142 1.20417 0.95285 0.98527 0.95631 1.21070 0.99177 1.00630 0.93141 1.21430 0.97976 0.98615 0.96283 1.21467 0.94192 0.98895 1.00145 1.21392 1.00651 1.00010 0.92096 1.21184 0.96491 0.99403 0.97950 1.22821 0.91465 0.94453 0.88887 1.67356 1.40771 0.98741 1.20660 0.92506 0.92154 0.85485 0.80674 0.82304 0.75657 0.97550 0.96740 0.92731 0.86158 0.83721 0.83181 0.83831 0.86753 0.80725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.37 113.37 1.18 1.67 16 2 O -0.31 -6.36 10.46 -88.08 -0.92 -7.28 16 3 C 0.33 7.79 7.49 84.83 0.64 8.42 16 4 C -0.19 -3.98 10.02 22.42 0.22 -3.76 16 5 C 0.01 0.33 9.70 22.70 0.22 0.55 16 6 C -0.23 -6.75 5.89 -20.00 -0.12 -6.87 16 7 C 0.56 20.42 7.73 86.72 0.67 21.09 16 8 O -0.58 -24.60 16.08 -3.97 -0.06 -24.66 16 9 N -0.69 -25.24 3.97 -449.19 -1.79 -27.02 16 10 C 0.20 8.42 2.11 44.24 0.09 8.51 16 11 H 0.06 2.91 7.45 -2.38 -0.02 2.89 16 12 C 0.04 1.83 4.50 29.85 0.13 1.96 16 13 C -0.53 -28.25 8.84 25.60 0.23 -28.03 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 15 C 0.01 0.77 5.46 84.65 0.46 1.23 16 16 N -0.92 -53.30 13.29 21.45 0.28 -53.01 16 17 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.10 -3.67 4.91 -19.87 -0.10 -3.76 16 22 C -0.12 -4.02 9.33 22.27 0.21 -3.81 16 23 C -0.13 -3.41 10.05 22.27 0.22 -3.18 16 24 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 25 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 26 C -0.13 -4.62 9.67 22.27 0.22 -4.41 16 27 C 0.18 4.81 10.71 85.03 0.91 5.72 16 28 N -0.55 -14.22 9.18 -307.81 -2.82 -17.05 16 29 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 30 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 31 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.18 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.16 3.73 7.73 -2.91 -0.02 3.71 16 34 H 0.41 13.37 6.66 -92.70 -0.62 12.75 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.12 3.71 7.71 -2.91 -0.02 3.69 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.11 3.98 8.04 -2.91 -0.02 3.96 16 43 H 0.18 4.14 6.41 -2.91 -0.02 4.12 16 Total: -1.00 -69.32 373.60 2.76 -66.56 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.42 Total: 28.19 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 5.63 Total: -10.98 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -4.32 Total: -97.08 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.99 Total: -31.94 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.32 2.76 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439669785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.429 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds