Wall clock time and date at job start Tue Mar 31 2020 14:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35843 * 116.99626 * 2 1 4 4 C 1.38579 * 120.12605 * 359.97438 * 3 2 1 5 5 C 1.38180 * 120.06886 * 180.02562 * 4 3 2 6 6 C 1.38382 * 120.30251 * 359.97438 * 5 4 3 7 7 C 1.38016 * 120.23745 * 0.02762 * 6 5 4 8 8 C 1.39297 * 119.93064 * 359.68062 * 7 6 5 9 9 C 1.48334 * 120.14945 * 180.29666 * 8 7 6 10 10 C 1.39424 * 120.09205 * 130.29526 * 9 8 7 11 11 C 1.38029 * 120.01965 * 179.97438 * 10 9 8 12 12 C 1.38230 * 120.19332 * 0.02562 * 11 10 9 13 13 C 1.38923 * 120.18274 * 359.97209 * 12 11 10 14 14 N 1.39958 * 120.01084 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99710 * 324.89100 * 14 13 12 16 16 O 1.21587 * 120.00250 * 4.60782 * 15 14 13 17 17 N 1.34777 * 120.00066 * 184.61268 * 15 14 13 18 18 C 1.46490 * 120.00253 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47154 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00223 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99835 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00064 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99900 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46721 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47159 * 119.99586 * 23 21 19 26 26 H 1.48498 * 109.46971 * 240.00148 * 23 21 19 27 27 C 1.38683 * 119.98110 * 359.79309 * 13 12 11 28 28 H 1.08995 * 109.47702 * 300.00641 * 1 2 3 29 29 H 1.08997 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46886 * 60.00883 * 1 2 3 31 31 H 1.08000 * 119.96310 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.84846 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.88116 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.03088 * 179.97438 * 7 6 5 35 35 H 1.08007 * 119.99017 * 359.95560 * 10 9 8 36 36 H 1.07999 * 119.90380 * 180.02562 * 11 10 9 37 37 H 1.08006 * 119.90829 * 179.97438 * 12 11 10 38 38 H 0.96993 * 120.00169 * 144.89782 * 14 13 12 39 39 H 0.97007 * 119.99484 * 359.97438 * 17 15 14 40 40 H 1.09003 * 109.47660 * 300.00225 * 18 17 15 41 41 H 1.09001 * 109.47247 * 60.00320 * 18 17 15 42 42 H 0.96999 * 119.99967 * 180.02562 * 22 21 19 43 43 H 1.07992 * 120.09977 * 180.25429 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2933 2.3742 -0.0005 5 6 1.9218 3.6048 -0.0011 6 6 3.3034 3.6833 -0.0005 7 6 4.0649 2.5322 0.0000 8 6 3.4416 1.2865 0.0066 9 6 4.2553 0.0463 0.0138 10 6 3.9861 -0.9610 0.9395 11 6 4.7439 -2.1147 0.9445 12 6 5.7713 -2.2756 0.0338 13 6 6.0466 -1.2772 -0.8921 14 7 7.0873 -1.4441 -1.8129 15 6 8.2081 -2.0995 -1.4515 16 8 8.2821 -2.6183 -0.3543 17 7 9.2471 -2.1799 -2.3062 18 6 10.4656 -2.8919 -1.9132 19 6 11.4655 -2.8357 -3.0392 20 1 11.2180 -2.3215 -3.9561 21 6 12.6961 -3.4417 -2.8993 22 7 12.9974 -4.0683 -1.7830 23 14 13.9359 -3.3715 -4.2948 24 1 13.3578 -2.6124 -5.4327 25 1 15.1720 -2.6955 -3.8253 26 1 14.2632 -4.7511 -4.7360 27 6 5.2868 -0.1171 -0.9070 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 0.2147 2.3193 -0.0014 32 1 1.3321 4.5096 -0.0019 33 1 3.7875 4.6486 -0.0005 34 1 5.1430 2.5973 -0.0001 35 1 3.1846 -0.8385 1.6530 36 1 4.5335 -2.8940 1.6620 37 1 6.3616 -3.1800 0.0421 38 1 7.0020 -1.0880 -2.7110 39 1 9.1880 -1.7663 -3.1817 40 1 10.8904 -2.4227 -1.0258 41 1 10.2240 -3.9319 -1.6939 42 1 13.8632 -4.4943 -1.6844 43 1 5.4965 0.6585 -1.6286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488270273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:17 Heat of formation + Delta-G solvation = -14.216875 kcal Electronic energy + Delta-G solvation = -25835.335134 eV Core-core repulsion = 22038.769829 eV Total energy + Delta-G solvation = -3796.565304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63063 -39.95190 -38.28198 -37.47101 -34.66849 -34.07306 -32.66710 -32.24015 -30.43957 -29.78818 -28.79080 -27.49934 -26.94327 -23.75686 -23.16513 -22.42079 -21.69505 -21.31219 -20.03422 -18.42383 -18.15700 -17.33041 -16.37119 -16.14409 -16.07659 -15.83627 -15.60717 -15.04903 -14.86721 -14.66854 -14.37440 -14.06625 -13.90297 -13.66380 -13.35130 -13.15380 -12.91295 -12.54793 -12.36335 -12.01121 -11.98904 -11.79863 -11.69573 -11.42117 -11.25314 -10.96907 -10.94609 -10.91906 -10.31703 -10.03826 -9.49463 -9.38438 -9.23948 -8.76418 -8.73560 -8.24065 -8.00943 -7.63169 -6.17471 -4.24262 0.81789 1.16166 1.55974 1.73101 2.99804 3.19165 3.23319 3.31031 3.34372 3.48625 3.72576 4.10277 4.31145 4.40675 4.56072 4.71864 4.80241 4.81846 4.94228 5.01587 5.09534 5.14026 5.16794 5.18886 5.35060 5.36419 5.50560 5.64902 5.74464 5.81264 5.94789 6.07746 6.16610 6.28479 6.47813 6.55314 6.58361 6.74714 6.81648 7.06995 7.13059 7.31681 7.42116 7.51012 7.52488 7.83588 7.98964 8.69688 8.84497 9.21429 9.43127 10.92743 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.002122 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.068557 B =13189.804270 C =13849.852271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.138 3.862 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.156 4.156 7 C -0.069 4.069 8 C -0.070 4.070 9 C -0.028 4.028 10 C -0.115 4.115 11 C -0.103 4.103 12 C -0.117 4.117 13 C 0.178 3.822 14 N -0.696 5.696 15 C 0.691 3.309 16 O -0.582 6.582 17 N -0.723 5.723 18 C 0.266 3.734 19 C -0.543 4.543 20 H 0.064 0.936 21 C 0.063 3.937 22 N -0.884 5.884 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.142 4.142 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.402 0.598 39 H 0.388 0.612 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.462 13.515 2.322 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.093 3.907 4 C -0.229 4.229 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.087 4.087 8 C -0.071 4.071 9 C -0.029 4.029 10 C -0.134 4.134 11 C -0.122 4.122 12 C -0.137 4.137 13 C 0.082 3.918 14 N -0.344 5.344 15 C 0.391 3.609 16 O -0.460 6.460 17 N -0.374 5.374 18 C 0.145 3.855 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.163 4.163 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.161 0.839 38 H 0.237 0.763 39 H 0.221 0.779 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.005 12.681 3.384 29.129 hybrid contribution 0.419 0.586 -1.573 1.730 sum -25.586 13.267 1.811 28.878 Atomic orbital electron populations 1.23075 0.78685 1.04050 1.01147 1.86178 1.20945 1.26416 1.88215 1.19014 0.91382 0.84403 0.95931 1.21159 0.99939 0.92276 1.09558 1.20964 0.94716 0.96876 0.97524 1.21013 0.93821 0.98435 1.04193 1.21162 1.00246 0.90548 0.96755 1.18158 0.89371 0.93353 1.06172 1.18177 0.95243 0.93159 0.96281 1.21001 0.99887 0.93481 0.98998 1.20960 0.95144 0.97460 0.98627 1.21488 0.96991 0.99463 0.95795 1.17397 0.88645 0.93303 0.92468 1.42793 1.15864 1.60831 1.14951 1.16155 0.79908 0.79772 0.85056 1.90873 1.81960 1.51551 1.21641 1.45774 1.15889 1.58371 1.17390 1.19049 0.78430 0.91805 0.96233 1.21246 0.99575 1.36347 1.00945 0.91835 1.24951 0.98135 0.94800 0.96163 1.69983 1.22563 1.34451 1.25176 0.86345 0.80900 0.77886 0.81666 1.19659 1.20785 1.20793 1.20821 0.98112 0.96159 1.01165 0.92731 0.88157 0.92764 0.85459 0.85892 0.85711 0.84986 0.86398 0.85887 0.83908 0.76308 0.77930 0.95509 0.95509 0.92463 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.14 8.84 -19.25 -0.17 -3.31 16 3 C 0.14 1.46 6.59 -38.87 -0.26 1.21 16 4 C -0.21 -1.79 9.03 -39.48 -0.36 -2.14 16 5 C -0.08 -0.65 10.03 -39.55 -0.40 -1.05 16 6 C -0.16 -1.32 10.03 -39.61 -0.40 -1.72 16 7 C -0.07 -0.70 9.50 -39.27 -0.37 -1.07 16 8 C -0.07 -0.81 5.48 -104.76 -0.57 -1.39 16 9 C -0.03 -0.37 5.27 -104.93 -0.55 -0.92 16 10 C -0.11 -1.51 8.78 -39.22 -0.34 -1.86 16 11 C -0.10 -1.45 10.03 -39.66 -0.40 -1.84 16 12 C -0.12 -1.94 8.69 -39.33 -0.34 -2.28 16 13 C 0.18 2.81 6.29 -83.73 -0.53 2.28 16 14 N -0.70 -11.07 5.34 -14.25 -0.08 -11.15 16 15 C 0.69 14.29 8.41 -86.92 -0.73 13.55 16 16 O -0.58 -14.27 13.77 5.29 0.07 -14.20 16 17 N -0.72 -15.30 5.55 -66.42 -0.37 -15.66 16 18 C 0.27 7.05 5.43 -5.20 -0.03 7.02 16 19 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 20 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -26.01 13.29 55.43 0.74 -25.28 16 23 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.14 -1.92 9.42 -39.05 -0.37 -2.29 16 28 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 32 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.13 1.23 8.04 -52.48 -0.42 0.81 16 35 H 0.12 1.39 7.68 -52.48 -0.40 0.99 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.14 2.69 6.21 -52.48 -0.33 2.37 16 38 H 0.40 4.95 8.84 -40.82 -0.36 4.59 16 39 H 0.39 6.94 8.34 -40.82 -0.34 6.60 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.12 1.41 8.04 -52.49 -0.42 0.99 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -33.75 368.47 -9.82 -43.56 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.47 Total: 9.37 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -5.07 Total: -4.68 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.29 Total: -52.09 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.10 Total: -17.51 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.75 -9.82 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488270273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.346 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds