Wall clock time and date at job start Tue Mar 31 2020 14:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35843 * 116.99626 * 2 1 4 4 C 1.38579 * 120.12605 * 359.97438 * 3 2 1 5 5 C 1.38180 * 120.06886 * 180.02562 * 4 3 2 6 6 C 1.38382 * 120.30251 * 359.97438 * 5 4 3 7 7 C 1.38016 * 120.23745 * 0.02762 * 6 5 4 8 8 C 1.39297 * 119.93064 * 359.68062 * 7 6 5 9 9 C 1.48334 * 120.14945 * 180.29666 * 8 7 6 10 10 C 1.39424 * 120.09205 * 130.29526 * 9 8 7 11 11 C 1.38029 * 120.01965 * 179.97438 * 10 9 8 12 12 C 1.38230 * 120.19332 * 0.02562 * 11 10 9 13 13 C 1.38923 * 120.18274 * 359.97209 * 12 11 10 14 14 N 1.39958 * 120.01084 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99710 * 324.89100 * 14 13 12 16 16 O 1.21587 * 120.00250 * 4.60782 * 15 14 13 17 17 N 1.34777 * 120.00066 * 184.61268 * 15 14 13 18 18 C 1.46490 * 120.00253 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47154 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00223 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99835 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00064 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99900 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46721 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47159 * 119.99586 * 23 21 19 26 26 H 1.48498 * 109.46971 * 240.00148 * 23 21 19 27 27 C 1.38683 * 119.98110 * 359.79309 * 13 12 11 28 28 H 1.08995 * 109.47702 * 300.00641 * 1 2 3 29 29 H 1.08997 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46886 * 60.00883 * 1 2 3 31 31 H 1.08000 * 119.96310 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.84846 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.88116 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.03088 * 179.97438 * 7 6 5 35 35 H 1.08007 * 119.99017 * 359.95560 * 10 9 8 36 36 H 1.07999 * 119.90380 * 180.02562 * 11 10 9 37 37 H 1.08006 * 119.90829 * 179.97438 * 12 11 10 38 38 H 0.96993 * 120.00169 * 144.89782 * 14 13 12 39 39 H 0.97007 * 119.99484 * 359.97438 * 17 15 14 40 40 H 1.09003 * 109.47660 * 300.00225 * 18 17 15 41 41 H 1.09001 * 109.47247 * 60.00320 * 18 17 15 42 42 H 0.96999 * 119.99967 * 180.02562 * 22 21 19 43 43 H 1.07992 * 120.09977 * 180.25429 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2933 2.3742 -0.0005 5 6 1.9218 3.6048 -0.0011 6 6 3.3034 3.6833 -0.0005 7 6 4.0649 2.5322 0.0000 8 6 3.4416 1.2865 0.0066 9 6 4.2553 0.0463 0.0138 10 6 3.9861 -0.9610 0.9395 11 6 4.7439 -2.1147 0.9445 12 6 5.7713 -2.2756 0.0338 13 6 6.0466 -1.2772 -0.8921 14 7 7.0873 -1.4441 -1.8129 15 6 8.2081 -2.0995 -1.4515 16 8 8.2821 -2.6183 -0.3543 17 7 9.2471 -2.1799 -2.3062 18 6 10.4656 -2.8919 -1.9132 19 6 11.4655 -2.8357 -3.0392 20 1 11.2180 -2.3215 -3.9561 21 6 12.6961 -3.4417 -2.8993 22 7 12.9974 -4.0683 -1.7830 23 14 13.9359 -3.3715 -4.2948 24 1 13.3578 -2.6124 -5.4327 25 1 15.1720 -2.6955 -3.8253 26 1 14.2632 -4.7511 -4.7360 27 6 5.2868 -0.1171 -0.9070 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 0.2147 2.3193 -0.0014 32 1 1.3321 4.5096 -0.0019 33 1 3.7875 4.6486 -0.0005 34 1 5.1430 2.5973 -0.0001 35 1 3.1846 -0.8385 1.6530 36 1 4.5335 -2.8940 1.6620 37 1 6.3616 -3.1800 0.0421 38 1 7.0020 -1.0880 -2.7110 39 1 9.1880 -1.7663 -3.1817 40 1 10.8904 -2.4227 -1.0258 41 1 10.2240 -3.9319 -1.6939 42 1 13.8632 -4.4943 -1.6844 43 1 5.4965 0.6585 -1.6286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488270273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:17 Heat of formation + Delta-G solvation = -35.724609 kcal Electronic energy + Delta-G solvation = -25836.267779 eV Core-core repulsion = 22038.769829 eV Total energy + Delta-G solvation = -3797.497950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68568 -41.10627 -39.50608 -38.19171 -36.33472 -35.75906 -34.40192 -33.44482 -31.15708 -30.94587 -29.87594 -28.82438 -28.03514 -25.10330 -24.56711 -23.46945 -22.61625 -22.60304 -21.47756 -19.83840 -19.21999 -18.44576 -17.95602 -17.29931 -16.98456 -16.86566 -16.68345 -16.43863 -16.31935 -15.88113 -15.51373 -15.35727 -14.97656 -14.67519 -14.59396 -14.30586 -14.12063 -14.03861 -13.70176 -13.42940 -13.01107 -12.87139 -12.76801 -12.73649 -12.51556 -12.26975 -12.21179 -11.95502 -11.73695 -11.45762 -11.41586 -11.05917 -10.82467 -10.21881 -9.94089 -9.57235 -9.12600 -8.83630 -8.29131 -6.45498 -0.02316 0.40009 0.49028 0.74681 1.43565 1.45209 1.57971 1.71922 2.10696 2.38746 2.41719 2.75021 2.96686 3.06160 3.38880 3.61274 3.95619 4.02079 4.10058 4.27004 4.31107 4.36183 4.43579 4.48724 4.49130 4.53679 4.67941 4.73170 4.78819 4.87558 5.03616 5.10948 5.24826 5.28080 5.37112 5.41439 5.43754 5.47915 5.58348 5.61059 5.66774 5.68755 5.82489 5.87720 6.09869 6.17904 6.50027 6.65650 7.16098 7.24897 7.58875 8.83348 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.002122 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.068557 B =13189.804270 C =13849.852271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.128 3.872 4 C -0.212 4.212 5 C -0.077 4.077 6 C -0.160 4.160 7 C -0.078 4.078 8 C -0.100 4.100 9 C -0.022 4.022 10 C -0.112 4.112 11 C -0.103 4.103 12 C -0.145 4.145 13 C 0.156 3.844 14 N -0.674 5.674 15 C 0.691 3.309 16 O -0.625 6.625 17 N -0.715 5.715 18 C 0.285 3.715 19 C -0.554 4.554 20 H 0.085 0.915 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.987 3.013 24 H -0.253 1.253 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.422 0.578 39 H 0.407 0.593 40 H -0.012 1.012 41 H -0.011 1.011 42 H 0.269 0.731 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.435 16.259 0.720 32.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.095 4.095 6 C -0.178 4.178 7 C -0.096 4.096 8 C -0.101 4.101 9 C -0.023 4.023 10 C -0.131 4.131 11 C -0.122 4.122 12 C -0.166 4.166 13 C 0.061 3.939 14 N -0.323 5.323 15 C 0.392 3.608 16 O -0.506 6.506 17 N -0.369 5.369 18 C 0.162 3.838 19 C -0.592 4.592 20 H 0.103 0.897 21 C -0.197 4.197 22 N -0.569 5.569 23 Si 0.810 3.190 24 H -0.176 1.176 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.156 4.156 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.260 0.740 39 H 0.243 0.757 40 H 0.006 0.994 41 H 0.007 0.993 42 H 0.078 0.922 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.053 15.474 1.736 32.085 hybrid contribution 0.807 -0.180 -0.978 1.280 sum -27.246 15.293 0.759 31.254 Atomic orbital electron populations 1.23333 0.76706 1.05306 1.02338 1.86135 1.23113 1.26727 1.88254 1.19168 0.91213 0.85257 0.96080 1.21470 1.01146 0.91759 1.08667 1.21379 0.94756 0.97806 0.95578 1.21307 0.94314 0.98722 1.03455 1.21282 1.00589 0.90733 0.96976 1.18191 0.89997 0.92935 1.08932 1.18472 0.94707 0.93849 0.95276 1.21209 0.99765 0.93008 0.99106 1.21127 0.94377 0.98423 0.98230 1.21371 0.98293 0.99107 0.97793 1.17577 0.89149 0.94299 0.92882 1.42404 1.14333 1.59591 1.16011 1.16251 0.80693 0.79642 0.84230 1.90853 1.82910 1.53264 1.23561 1.45326 1.14749 1.58386 1.18417 1.18473 0.80297 0.89770 0.95276 1.21619 0.99724 1.36427 1.01441 0.89715 1.26071 1.00531 0.94038 0.99014 1.70144 1.23403 1.35510 1.27799 0.85083 0.77632 0.78076 0.78235 1.17634 1.20455 1.20480 1.20983 0.97550 0.95530 1.01501 0.91347 0.87049 0.91650 0.83121 0.82951 0.83618 0.84938 0.84881 0.84218 0.87054 0.74022 0.75723 0.99387 0.99311 0.92215 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.23 8.84 -91.78 -0.81 -7.04 16 3 C 0.13 2.47 6.59 22.73 0.15 2.62 16 4 C -0.21 -2.94 9.03 22.34 0.20 -2.74 16 5 C -0.08 -0.93 10.03 22.29 0.22 -0.71 16 6 C -0.16 -2.24 10.03 22.25 0.22 -2.02 16 7 C -0.08 -1.44 9.50 22.47 0.21 -1.22 16 8 C -0.10 -2.18 5.48 -19.96 -0.11 -2.29 16 9 C -0.02 -0.57 5.27 -20.06 -0.11 -0.68 16 10 C -0.11 -2.91 8.78 22.51 0.20 -2.72 16 11 C -0.10 -2.96 10.03 22.22 0.22 -2.74 16 12 C -0.14 -5.08 8.69 22.43 0.19 -4.88 16 13 C 0.16 5.04 6.29 38.11 0.24 5.27 16 14 N -0.67 -21.73 5.34 -317.26 -1.69 -23.43 16 15 C 0.69 29.77 8.41 179.05 1.51 31.28 16 16 O -0.63 -32.66 13.77 -3.99 -0.05 -32.72 16 17 N -0.72 -31.13 5.55 -482.31 -2.68 -33.81 16 18 C 0.28 15.85 5.43 85.64 0.46 16.31 16 19 C -0.55 -30.23 9.28 25.60 0.24 -29.99 16 20 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 21 C 0.00 0.17 5.46 84.66 0.46 0.64 16 22 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 23 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 24 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 C -0.14 -3.59 9.42 22.62 0.21 -3.37 16 28 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 29 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16 31 H 0.15 1.29 6.30 -2.91 -0.02 1.27 16 32 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.13 2.31 8.04 -2.91 -0.02 2.29 16 35 H 0.13 3.02 7.68 -2.91 -0.02 3.00 16 36 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.11 4.59 6.21 -2.91 -0.02 4.57 16 38 H 0.42 10.04 8.84 -92.71 -0.82 9.22 16 39 H 0.41 14.41 8.34 -92.70 -0.77 13.64 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.14 3.10 8.04 -2.91 -0.02 3.08 16 Total: -1.00 -76.82 368.47 2.18 -74.63 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.54 Total: 29.92 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.65 Total: 4.04 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -4.09 Total: -113.28 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.87 Total: -39.76 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -76.82 2.18 -74.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488270273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.910 kcal (2) G-P(sol) polarization free energy of solvation -76.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds