Wall clock time and date at job start Tue Mar 31 2020 14:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00017 * 2 1 4 4 C 1.50700 * 109.47017 * 269.99783 * 3 2 1 5 5 C 1.34854 * 125.89286 * 264.69388 * 4 3 2 6 6 C 1.40890 * 107.41487 * 179.88641 * 5 4 3 7 7 C 1.34846 * 107.42234 * 0.37952 * 6 5 4 8 8 N 1.36345 * 125.88919 * 85.00399 * 4 3 2 9 9 H 0.97001 * 125.63864 * 359.95327 * 8 4 3 10 10 C 1.34776 * 119.99543 * 180.02562 * 2 1 3 11 11 O 1.21722 * 119.99958 * 179.97438 * 10 2 1 12 12 C 1.46252 * 120.00586 * 359.97438 * 10 2 1 13 13 C 1.35013 * 120.00443 * 173.03716 * 12 10 2 14 14 C 1.46963 * 120.00217 * 348.96407 * 13 12 10 15 15 C 1.40026 * 120.09567 * 311.73079 * 14 13 12 16 16 C 1.37606 * 119.89098 * 179.69492 * 15 14 13 17 17 C 1.39173 * 120.10382 * 0.59602 * 16 15 14 18 18 O 1.35570 * 119.89641 * 179.69698 * 17 16 15 19 19 C 1.34782 * 116.99771 * 185.58758 * 18 17 16 20 20 H 1.08007 * 119.99990 * 354.91093 * 19 18 17 21 21 C 1.38713 * 120.00210 * 174.91209 * 19 18 17 22 22 N 1.31512 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00228 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47176 * 60.00203 * 23 21 19 25 25 H 1.48502 * 109.47120 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47347 * 299.99854 * 23 21 19 27 27 C 1.39180 * 120.20283 * 359.67808 * 17 16 15 28 28 C 1.37600 * 120.10117 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47199 * 270.00525 * 1 2 3 30 30 H 1.09004 * 109.46832 * 30.00005 * 1 2 3 31 31 H 1.08997 * 109.47706 * 149.99907 * 1 2 3 32 32 H 1.09000 * 109.47120 * 30.00082 * 3 2 1 33 33 H 1.08999 * 109.47107 * 150.00178 * 3 2 1 34 34 H 1.07998 * 126.28981 * 0.02562 * 5 4 3 35 35 H 1.08003 * 126.28647 * 180.12536 * 6 5 4 36 36 H 1.07999 * 125.89914 * 179.73939 * 7 6 5 37 37 H 1.08006 * 119.99759 * 353.03959 * 12 10 2 38 38 H 1.08005 * 120.00552 * 169.23703 * 13 12 10 39 39 H 1.07993 * 120.05509 * 359.97438 * 15 14 13 40 40 H 1.08002 * 119.94715 * 180.27478 * 16 15 14 41 41 H 0.97001 * 120.00064 * 179.97438 * 22 21 19 42 42 H 1.07993 * 119.94803 * 179.97438 * 27 17 16 43 43 H 1.07994 * 120.05176 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.5701 1.4705 -2.1325 6 6 3.3873 2.0425 -3.4070 7 6 2.1646 2.6107 -3.4229 8 7 1.5836 2.4060 -2.2065 9 1 0.7006 2.7096 -1.9437 10 6 2.1388 -1.1672 -0.0005 11 8 3.3560 -1.1673 -0.0010 12 6 1.4075 -2.4338 -0.0005 13 6 2.0750 -3.5988 -0.1428 14 6 3.4905 -3.5912 -0.5380 15 6 3.9120 -2.8146 -1.6242 16 6 5.2394 -2.8057 -1.9868 17 6 6.1603 -3.5766 -1.2835 18 8 7.4660 -3.5694 -1.6481 19 6 8.2860 -4.4232 -1.0036 20 1 7.9118 -5.0133 -0.1800 21 6 9.6104 -4.5439 -1.3979 22 7 10.0659 -3.8258 -2.4010 23 14 10.7470 -5.7266 -0.5041 24 1 10.2120 -7.1074 -0.6163 25 1 12.0997 -5.6694 -1.1141 26 1 10.8327 -5.3438 0.9281 27 6 5.7449 -4.3545 -0.2067 28 6 4.4206 -4.3649 0.1668 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.4463 0.9405 -1.7893 35 1 4.0978 2.0317 -4.2204 36 1 1.7219 3.1376 -4.2553 37 1 0.3335 -2.4373 0.1132 38 1 1.5676 -4.5365 0.0296 39 1 3.1973 -2.2200 -2.1738 40 1 5.5663 -2.2035 -2.8217 41 1 10.9921 -3.9099 -2.6766 42 1 6.4629 -4.9514 0.3359 43 1 4.0992 -4.9685 1.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492044716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:07 Heat of formation + Delta-G solvation = 50.602433 kcal Electronic energy + Delta-G solvation = -26934.173373 eV Core-core repulsion = 23140.418845 eV Total energy + Delta-G solvation = -3793.754528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10378 -39.67910 -38.67909 -36.60944 -35.30173 -33.10533 -32.10678 -30.87048 -30.61148 -30.04955 -28.01469 -26.95161 -25.75405 -25.16889 -22.66683 -21.69938 -20.77834 -20.46468 -20.01427 -18.50297 -17.84659 -17.60591 -17.16135 -16.71279 -15.94915 -15.14718 -14.60441 -14.49113 -14.28023 -13.86327 -13.73805 -13.62064 -13.51074 -13.39087 -13.12533 -12.98666 -12.83471 -12.62477 -12.44676 -12.38278 -12.10312 -12.08897 -11.65407 -11.53225 -11.25100 -10.93313 -10.61602 -10.58533 -10.38303 -9.46334 -9.33012 -9.11505 -8.75901 -8.71754 -8.65003 -8.03259 -7.88043 -6.82145 -6.39943 -3.95969 1.31593 2.15083 2.48509 2.70988 2.99602 3.17238 3.19364 3.21005 3.28126 3.41493 3.66879 4.01937 4.69723 4.75346 4.82558 4.92128 5.07769 5.16280 5.17850 5.21566 5.29291 5.39890 5.44496 5.55866 5.62882 5.69855 5.78935 5.87402 5.92083 6.27533 6.33651 6.34536 6.43715 6.52474 6.55818 6.65443 6.85652 7.06278 7.09906 7.17597 7.21006 7.41892 7.48398 7.54908 7.56686 7.58227 7.98647 8.06601 8.53784 9.05613 9.78576 10.77959 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.003198 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.281198 B = 8752.234028 C =10135.435685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.623 5.623 3 C 0.189 3.811 4 C -0.010 4.010 5 C -0.162 4.162 6 C -0.200 4.200 7 C -0.018 4.018 8 N -0.559 5.559 9 H 0.406 0.594 10 C 0.543 3.457 11 O -0.500 6.500 12 C -0.264 4.264 13 C 0.026 3.974 14 C -0.182 4.182 15 C 0.003 3.997 16 C -0.196 4.196 17 C 0.169 3.831 18 O -0.174 6.174 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.247 4.247 28 C -0.045 4.045 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.797 9.070 3.391 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.358 5.358 3 C 0.065 3.935 4 C -0.123 4.123 5 C -0.188 4.188 6 C -0.225 4.225 7 C -0.149 4.149 8 N -0.154 5.154 9 H 0.242 0.758 10 C 0.334 3.666 11 O -0.375 6.375 12 C -0.285 4.285 13 C 0.006 3.994 14 C -0.183 4.183 15 C -0.015 4.015 16 C -0.215 4.215 17 C 0.115 3.885 18 O -0.076 6.076 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.266 4.266 28 C -0.063 4.063 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.177 0.823 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.119 0.881 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.881 9.274 3.154 23.064 hybrid contribution -0.115 -0.312 0.486 0.589 sum -20.995 8.963 3.640 23.117 Atomic orbital electron populations 1.21704 0.80421 1.02533 1.01286 1.47919 1.06244 1.05778 1.75882 1.19711 0.99092 0.84600 0.90086 1.20713 0.92300 1.03784 0.95486 1.20950 0.98848 1.04673 0.94314 1.21001 0.97434 1.05336 0.98751 1.21767 0.96134 1.07927 0.89096 1.41913 1.16006 1.45448 1.12072 0.75830 1.18490 0.87719 0.83834 0.76518 1.90992 1.12862 1.86485 1.47115 1.22726 0.99305 0.92531 1.13923 1.22366 0.93468 0.96464 0.87058 1.18283 0.92142 1.06084 1.01820 1.20416 0.94164 0.92848 0.94116 1.20000 0.91957 1.05797 1.03765 1.19526 0.85091 0.92290 0.91622 1.83911 1.13056 1.54166 1.56482 1.21331 0.90847 1.19591 1.14876 0.89020 1.25303 0.96675 0.97979 0.96568 1.70017 1.16226 1.38084 1.25202 0.85786 0.78781 0.79743 0.79153 1.19494 1.20294 1.19484 1.20945 0.96317 1.07296 1.02071 1.20698 0.92642 0.95902 0.97048 0.92833 0.92397 0.90795 0.90693 0.87569 0.84209 0.84801 0.82280 0.86109 0.86142 0.88124 0.86820 0.91965 0.85729 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.10 59.85 0.60 1.21 16 2 N -0.62 -7.15 2.86 -184.67 -0.53 -7.67 16 3 C 0.19 2.11 5.94 -5.20 -0.03 2.08 16 4 C -0.01 -0.13 6.75 -81.79 -0.55 -0.68 16 5 C -0.16 -2.47 10.77 -39.78 -0.43 -2.89 16 6 C -0.20 -2.69 10.86 -39.78 -0.43 -3.12 16 7 C -0.02 -0.19 11.94 -16.75 -0.20 -0.39 16 8 N -0.56 -5.38 6.08 -9.12 -0.06 -5.44 16 9 H 0.41 2.52 8.96 -40.82 -0.37 2.16 16 10 C 0.54 8.18 6.81 -13.04 -0.09 8.09 16 11 O -0.50 -9.70 12.06 5.17 0.06 -9.64 16 12 C -0.26 -3.41 9.05 -37.51 -0.34 -3.75 16 13 C 0.03 0.37 9.77 -37.20 -0.36 0.01 16 14 C -0.18 -3.42 4.34 -105.02 -0.46 -3.88 16 15 C 0.00 0.06 6.77 -39.14 -0.27 -0.20 16 16 C -0.20 -4.58 9.97 -39.46 -0.39 -4.97 16 17 C 0.17 4.37 6.66 -38.88 -0.26 4.11 16 18 O -0.17 -5.18 9.74 0.74 0.01 -5.17 16 19 C -0.39 -11.27 9.48 30.91 0.29 -10.97 16 20 H 0.09 2.45 5.18 -52.48 -0.27 2.18 16 21 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 22 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 23 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 C -0.25 -5.73 9.14 -39.46 -0.36 -6.09 16 28 C -0.04 -0.88 9.78 -39.15 -0.38 -1.26 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.07 0.50 6.19 -51.93 -0.32 0.18 16 32 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.11 1.41 7.42 -51.93 -0.39 1.03 16 34 H 0.14 2.44 8.06 -52.49 -0.42 2.02 16 35 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.13 6.34 -52.48 -0.33 0.80 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 39 H 0.10 1.93 7.46 -52.49 -0.39 1.54 16 40 H 0.11 2.62 8.06 -52.49 -0.42 2.20 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 2.86 5.62 -52.49 -0.29 2.56 16 43 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -35.40 367.03 -8.29 -43.70 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.30 Total: 9.49 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -3.75 Total: -21.70 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.18 Total: -38.17 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.07 Total: -14.81 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.40 -8.29 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492044716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.297 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds