Wall clock time and date at job start Tue Mar 31 2020 14:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00017 * 2 1 4 4 C 1.50700 * 109.47017 * 269.99783 * 3 2 1 5 5 C 1.34854 * 125.89286 * 264.69388 * 4 3 2 6 6 C 1.40890 * 107.41487 * 179.88641 * 5 4 3 7 7 C 1.34846 * 107.42234 * 0.37952 * 6 5 4 8 8 N 1.36345 * 125.88919 * 85.00399 * 4 3 2 9 9 H 0.97001 * 125.63864 * 359.95327 * 8 4 3 10 10 C 1.34776 * 119.99543 * 180.02562 * 2 1 3 11 11 O 1.21722 * 119.99958 * 179.97438 * 10 2 1 12 12 C 1.46252 * 120.00586 * 359.97438 * 10 2 1 13 13 C 1.35013 * 120.00443 * 173.03716 * 12 10 2 14 14 C 1.46963 * 120.00217 * 348.96407 * 13 12 10 15 15 C 1.40026 * 120.09567 * 311.73079 * 14 13 12 16 16 C 1.37606 * 119.89098 * 179.69492 * 15 14 13 17 17 C 1.39173 * 120.10382 * 0.59602 * 16 15 14 18 18 O 1.35570 * 119.89641 * 179.69698 * 17 16 15 19 19 C 1.34782 * 116.99771 * 185.58758 * 18 17 16 20 20 H 1.08007 * 119.99990 * 354.91093 * 19 18 17 21 21 C 1.38713 * 120.00210 * 174.91209 * 19 18 17 22 22 N 1.31512 * 119.99965 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00228 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47176 * 60.00203 * 23 21 19 25 25 H 1.48502 * 109.47120 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47347 * 299.99854 * 23 21 19 27 27 C 1.39180 * 120.20283 * 359.67808 * 17 16 15 28 28 C 1.37600 * 120.10117 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47199 * 270.00525 * 1 2 3 30 30 H 1.09004 * 109.46832 * 30.00005 * 1 2 3 31 31 H 1.08997 * 109.47706 * 149.99907 * 1 2 3 32 32 H 1.09000 * 109.47120 * 30.00082 * 3 2 1 33 33 H 1.08999 * 109.47107 * 150.00178 * 3 2 1 34 34 H 1.07998 * 126.28981 * 0.02562 * 5 4 3 35 35 H 1.08003 * 126.28647 * 180.12536 * 6 5 4 36 36 H 1.07999 * 125.89914 * 179.73939 * 7 6 5 37 37 H 1.08006 * 119.99759 * 353.03959 * 12 10 2 38 38 H 1.08005 * 120.00552 * 169.23703 * 13 12 10 39 39 H 1.07993 * 120.05509 * 359.97438 * 15 14 13 40 40 H 1.08002 * 119.94715 * 180.27478 * 16 15 14 41 41 H 0.97001 * 120.00064 * 179.97438 * 22 21 19 42 42 H 1.07993 * 119.94803 * 179.97438 * 27 17 16 43 43 H 1.07994 * 120.05176 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 3.5701 1.4705 -2.1325 6 6 3.3873 2.0425 -3.4070 7 6 2.1646 2.6107 -3.4229 8 7 1.5836 2.4060 -2.2065 9 1 0.7006 2.7096 -1.9437 10 6 2.1388 -1.1672 -0.0005 11 8 3.3560 -1.1673 -0.0010 12 6 1.4075 -2.4338 -0.0005 13 6 2.0750 -3.5988 -0.1428 14 6 3.4905 -3.5912 -0.5380 15 6 3.9120 -2.8146 -1.6242 16 6 5.2394 -2.8057 -1.9868 17 6 6.1603 -3.5766 -1.2835 18 8 7.4660 -3.5694 -1.6481 19 6 8.2860 -4.4232 -1.0036 20 1 7.9118 -5.0133 -0.1800 21 6 9.6104 -4.5439 -1.3979 22 7 10.0659 -3.8258 -2.4010 23 14 10.7470 -5.7266 -0.5041 24 1 10.2120 -7.1074 -0.6163 25 1 12.0997 -5.6694 -1.1141 26 1 10.8327 -5.3438 0.9281 27 6 5.7449 -4.3545 -0.2067 28 6 4.4206 -4.3649 0.1668 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1384 0.5138 34 1 4.4463 0.9405 -1.7893 35 1 4.0978 2.0317 -4.2204 36 1 1.7219 3.1376 -4.2553 37 1 0.3335 -2.4373 0.1132 38 1 1.5676 -4.5365 0.0296 39 1 3.1973 -2.2200 -2.1738 40 1 5.5663 -2.2035 -2.8217 41 1 10.9921 -3.9099 -2.6766 42 1 6.4629 -4.9514 0.3359 43 1 4.0992 -4.9685 1.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492044716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:06 Heat of formation + Delta-G solvation = 26.970252 kcal Electronic energy + Delta-G solvation = -26935.198141 eV Core-core repulsion = 23140.418845 eV Total energy + Delta-G solvation = -3794.779297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07545 -41.01459 -40.36228 -38.28226 -36.46095 -34.63017 -33.96354 -31.85967 -31.82348 -31.60964 -29.56037 -27.71121 -27.47453 -26.56723 -24.05001 -23.44669 -22.17626 -21.49615 -21.05586 -19.97503 -19.50294 -18.76850 -18.52729 -18.11828 -17.05034 -16.39814 -16.32917 -16.02834 -15.74381 -15.52281 -15.16211 -14.88853 -14.71932 -14.49472 -14.45190 -14.24608 -14.18350 -13.76130 -13.67788 -13.56173 -13.42540 -13.22452 -13.16813 -12.92872 -12.58830 -12.47252 -12.37692 -12.15904 -12.11565 -11.22144 -10.92082 -10.61310 -10.37076 -9.78393 -9.76642 -9.51918 -8.99490 -8.57213 -8.47323 -6.15002 0.04754 0.71235 1.07554 1.21459 1.33403 1.46891 1.50953 1.97750 2.18080 2.38638 2.43625 2.56880 2.86897 3.22790 3.51173 3.80864 3.97652 4.02003 4.12465 4.16665 4.21458 4.33280 4.43589 4.53350 4.54787 4.56751 4.68097 4.75904 4.80851 4.82933 4.95664 5.06121 5.10324 5.24361 5.27095 5.32950 5.40545 5.45157 5.61527 5.68853 5.72941 5.83446 6.00729 6.03030 6.16156 6.25646 6.54001 6.83720 6.96148 7.42233 7.79089 8.75973 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.003198 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.281198 B = 8752.234028 C =10135.435685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.614 5.614 3 C 0.188 3.812 4 C 0.000 4.000 5 C -0.210 4.210 6 C -0.240 4.240 7 C 0.009 3.991 8 N -0.536 5.536 9 H 0.430 0.570 10 C 0.524 3.476 11 O -0.559 6.559 12 C -0.229 4.229 13 C 0.002 3.998 14 C -0.150 4.150 15 C 0.007 3.993 16 C -0.214 4.214 17 C 0.125 3.875 18 O -0.233 6.233 19 C -0.417 4.417 20 H 0.103 0.897 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.257 1.257 27 C -0.254 4.254 28 C -0.050 4.050 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.202 0.798 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.811 9.023 5.468 29.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.347 5.347 3 C 0.064 3.936 4 C -0.114 4.114 5 C -0.236 4.236 6 C -0.264 4.264 7 C -0.123 4.123 8 N -0.133 5.133 9 H 0.270 0.730 10 C 0.316 3.684 11 O -0.438 6.438 12 C -0.249 4.249 13 C -0.017 4.017 14 C -0.151 4.151 15 C -0.011 4.011 16 C -0.234 4.234 17 C 0.075 3.925 18 O -0.139 6.139 19 C -0.493 4.493 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.841 3.159 24 H -0.178 1.178 25 H -0.194 1.194 26 H -0.182 1.182 27 C -0.273 4.273 28 C -0.068 4.068 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.219 0.781 37 H 0.191 0.809 38 H 0.187 0.813 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.044 9.266 5.255 29.066 hybrid contribution 1.214 -0.032 -0.103 1.219 sum -25.830 9.234 5.152 27.910 Atomic orbital electron populations 1.22092 0.76952 1.04449 1.03412 1.47973 1.08304 1.04661 1.73772 1.19745 0.98741 0.85727 0.89351 1.20628 0.91700 1.03243 0.95848 1.20807 0.99242 1.07106 0.96483 1.21133 0.99528 1.07551 0.98223 1.22239 0.94525 1.05604 0.89940 1.41818 1.16437 1.43914 1.11174 0.73042 1.19165 0.87380 0.85770 0.76114 1.91005 1.15551 1.87486 1.49776 1.23194 1.01479 0.90528 1.09695 1.22607 0.90575 0.99304 0.89259 1.18849 0.95025 1.02142 0.99054 1.20544 0.92694 0.93005 0.94888 1.20126 0.93510 1.05983 1.03758 1.19972 0.84533 0.94453 0.93589 1.83880 1.14878 1.56430 1.58730 1.21863 0.91639 1.20204 1.15596 0.87997 1.26695 0.98093 0.99933 0.97445 1.70183 1.16860 1.41023 1.27932 0.84610 0.76076 0.77289 0.77947 1.17813 1.19440 1.18170 1.21090 0.98130 1.06815 1.01253 1.21150 0.91091 0.96481 0.98069 0.90518 0.89943 0.89609 0.86313 0.90851 0.88791 0.85479 0.78108 0.80852 0.81268 0.87074 0.88677 0.91777 0.86160 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.10 127.77 1.29 1.89 16 2 N -0.61 -11.93 2.86 -856.39 -2.45 -14.38 16 3 C 0.19 3.88 5.94 85.63 0.51 4.39 16 4 C 0.00 0.00 6.75 41.08 0.28 0.27 16 5 C -0.21 -6.95 10.77 22.14 0.24 -6.71 16 6 C -0.24 -6.74 10.86 22.14 0.24 -6.50 16 7 C 0.01 0.17 11.94 83.21 0.99 1.17 16 8 N -0.54 -8.52 6.08 -182.76 -1.11 -9.63 16 9 H 0.43 3.04 8.96 -92.71 -0.83 2.21 16 10 C 0.52 14.48 6.81 86.33 0.59 15.07 16 11 O -0.56 -22.06 12.06 -4.42 -0.05 -22.11 16 12 C -0.23 -4.68 9.05 23.61 0.21 -4.47 16 13 C 0.00 0.04 9.77 23.82 0.23 0.27 16 14 C -0.15 -5.41 4.34 -20.12 -0.09 -5.49 16 15 C 0.01 0.30 6.77 22.55 0.15 0.45 16 16 C -0.21 -11.02 9.97 22.35 0.22 -10.80 16 17 C 0.13 7.07 6.66 22.72 0.15 7.22 16 18 O -0.23 -15.38 9.74 -20.27 -0.20 -15.58 16 19 C -0.42 -26.04 9.48 67.93 0.64 -25.39 16 20 H 0.10 5.82 5.18 -2.91 -0.02 5.81 16 21 C -0.02 -1.47 5.49 84.85 0.47 -1.00 16 22 N -0.92 -59.72 13.67 21.62 0.30 -59.42 16 23 Si 1.02 45.02 29.55 68.60 2.03 47.05 16 24 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 27 C -0.25 -12.33 9.14 22.35 0.20 -12.13 16 28 C -0.05 -1.93 9.78 22.55 0.22 -1.71 16 29 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.34 8.07 -2.38 -0.02 0.32 16 31 H 0.09 0.55 6.19 -2.39 -0.01 0.54 16 32 H 0.12 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.07 2.04 7.42 -2.39 -0.02 2.02 16 34 H 0.09 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.17 1.81 6.34 -2.91 -0.02 1.80 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.11 4.37 7.46 -2.91 -0.02 4.34 16 40 H 0.09 5.03 8.06 -2.91 -0.02 5.01 16 41 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 42 H 0.12 5.82 5.62 -2.91 -0.02 5.80 16 43 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -91.84 367.03 5.29 -86.55 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.22 Total: 30.99 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 6.56 Total: -43.46 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -3.26 Total: -83.44 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.25 Total: -37.69 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -91.84 5.29 -86.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492044716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.521 kcal (2) G-P(sol) polarization free energy of solvation -91.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds