Wall clock time and date at job start Tue Mar 31 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34649 * 116.99662 * 2 1 4 4 O 1.21509 * 120.00267 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99520 * 179.97438 * 3 2 1 6 6 C 1.39950 * 119.99755 * 175.48049 * 5 3 2 7 7 C 1.38944 * 120.03009 * 215.50735 * 6 5 3 8 8 C 1.38141 * 120.07547 * 180.02562 * 7 6 5 9 9 C 1.38170 * 120.14567 * 0.04365 * 8 7 6 10 10 C 1.38943 * 120.06201 * 0.02562 * 9 8 7 11 11 N 1.39675 * 120.03679 * 179.97438 * 10 9 8 12 12 C 1.46498 * 120.00264 * 0.02562 * 11 10 9 13 13 C 1.50702 * 109.47163 * 179.97438 * 12 11 10 14 14 C 1.38628 * 119.74909 * 269.73064 * 13 12 11 15 15 C 1.37628 * 120.24708 * 179.72202 * 14 13 12 16 16 C 1.40711 * 119.74083 * 0.56913 * 15 14 13 17 17 C 1.41396 * 120.23904 * 179.68330 * 16 15 14 18 18 H 1.08009 * 119.99990 * 204.60055 * 17 16 15 19 19 C 1.39942 * 120.00298 * 24.60268 * 17 16 15 20 20 N 1.30828 * 119.99916 * 15.33510 * 19 17 16 21 21 Si 1.86807 * 120.00138 * 195.33308 * 19 17 16 22 22 H 1.48497 * 109.46951 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46983 * 120.00087 * 21 19 17 24 24 H 1.48498 * 109.46929 * 240.00003 * 21 19 17 25 25 C 1.40711 * 119.51779 * 359.70215 * 16 15 14 26 26 C 1.37625 * 119.73919 * 0.02562 * 25 16 15 27 27 C 1.38707 * 120.02899 * 35.58376 * 6 5 3 28 28 H 1.09003 * 109.46973 * 60.00337 * 1 2 3 29 29 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47217 * 300.00367 * 1 2 3 31 31 H 0.97002 * 119.99933 * 355.48565 * 5 3 2 32 32 H 1.08000 * 119.96132 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.92918 * 180.02562 * 8 7 6 34 34 H 1.08006 * 119.97296 * 179.97438 * 9 8 7 35 35 H 0.97001 * 119.99782 * 180.02562 * 11 10 9 36 36 H 1.08998 * 109.47010 * 300.00056 * 12 11 10 37 37 H 1.09001 * 109.46833 * 59.99971 * 12 11 10 38 38 H 1.08004 * 119.88137 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.12725 * 180.27407 * 15 14 13 40 40 H 0.97005 * 119.99586 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.13254 * 179.97438 * 25 16 15 42 42 H 1.08003 * 119.86960 * 180.02562 * 26 25 16 43 43 H 1.07997 * 120.07344 * 0.24243 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0448 2.5135 -0.0950 7 6 5.2362 2.6330 -0.7999 8 6 5.8646 3.8596 -0.8943 9 6 5.3116 4.9711 -0.2878 10 6 4.1212 4.8579 0.4198 11 7 3.5630 5.9818 1.0332 12 6 4.2322 7.2809 0.9302 13 6 3.4309 8.3191 1.6725 14 6 2.4495 9.0365 1.0062 15 6 1.7076 9.9829 1.6755 16 6 1.9567 10.2295 3.0383 17 6 1.2054 11.2043 3.7345 18 1 1.6182 11.6786 4.6127 19 6 -0.0730 11.5545 3.2858 20 7 -0.6956 10.7917 2.4244 21 14 -0.8905 13.1111 3.9169 22 1 0.0163 13.7929 4.8750 23 1 -1.1762 14.0176 2.7759 24 1 -2.1611 12.7605 4.6008 25 6 2.9592 9.4994 3.7030 26 6 3.6848 8.5537 3.0151 27 6 3.4868 3.6271 0.5153 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9373 0.4593 0.0670 32 1 5.6714 1.7660 -1.2745 33 1 6.7903 3.9499 -1.4432 34 1 5.8055 5.9286 -0.3631 35 1 2.7321 5.9021 1.5274 36 1 5.2292 7.2114 1.3653 37 1 4.3126 7.5660 -0.1188 38 1 2.2635 8.8491 -0.0410 39 1 0.9405 10.5376 1.1556 40 1 -1.5820 11.0344 2.1136 41 1 3.1590 9.6808 4.7487 42 1 4.4545 7.9917 3.5233 43 1 2.5635 3.5355 1.0681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495141587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:47 Heat of formation + Delta-G solvation = -31.922115 kcal Electronic energy + Delta-G solvation = -25696.860186 eV Core-core repulsion = 21899.527124 eV Total energy + Delta-G solvation = -3797.333061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97359 -39.26935 -37.85625 -36.90248 -35.68409 -34.44778 -33.50829 -30.94674 -29.86494 -29.36007 -28.63228 -27.54255 -26.31680 -23.88024 -23.09381 -21.90721 -21.07719 -20.86984 -19.89054 -19.06204 -17.70731 -17.37682 -16.85801 -16.72133 -15.98381 -15.60078 -15.28999 -14.87447 -14.34045 -14.25701 -14.10514 -13.92419 -13.60986 -13.34843 -13.26960 -13.05178 -12.53116 -12.34507 -12.16721 -12.01589 -11.69247 -11.56846 -11.50233 -11.17273 -11.04496 -10.99946 -10.70944 -10.64183 -10.44522 -10.29268 -9.71241 -9.63471 -9.44572 -9.23475 -8.23818 -7.55757 -7.42812 -7.07650 -6.82743 -4.45658 1.42033 1.76511 1.93691 2.59739 2.65068 2.99924 3.03067 3.06242 3.08865 3.85523 3.87772 4.05200 4.12180 4.60063 4.88559 4.97707 5.04343 5.22642 5.29490 5.42426 5.56087 5.62156 5.64963 5.75395 5.83026 5.86750 6.08100 6.18511 6.26727 6.30166 6.35245 6.41098 6.57213 6.67387 6.88176 6.99310 7.03877 7.17399 7.20319 7.29393 7.53054 7.69817 7.79143 7.97707 8.03467 8.07597 8.16652 8.22272 8.56329 8.80952 8.88499 10.10084 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002396 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.995643 B =11682.310365 C =13184.024391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.643 3.357 4 O -0.545 6.545 5 N -0.649 5.649 6 C 0.195 3.805 7 C -0.213 4.213 8 C -0.053 4.053 9 C -0.215 4.215 10 C 0.243 3.757 11 N -0.730 5.730 12 C 0.188 3.812 13 C -0.242 4.242 14 C -0.082 4.082 15 C -0.168 4.168 16 C 0.115 3.885 17 C -0.457 4.457 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.790 5.790 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.230 4.230 26 C -0.071 4.071 27 C -0.202 4.202 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.415 0.585 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.402 0.598 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.281 0.719 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -17.527 -5.933 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.397 3.603 4 O -0.432 6.432 5 N -0.300 5.300 6 C 0.102 3.898 7 C -0.236 4.236 8 C -0.072 4.072 9 C -0.238 4.238 10 C 0.135 3.865 11 N -0.356 5.356 12 C 0.066 3.934 13 C -0.244 4.244 14 C -0.101 4.101 15 C -0.188 4.188 16 C 0.112 3.888 17 C -0.486 4.486 18 H 0.097 0.903 19 C -0.145 4.145 20 N -0.415 5.415 21 Si 0.734 3.266 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.249 4.249 26 C -0.090 4.090 27 C -0.227 4.227 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.251 0.749 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.237 0.763 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.727 -16.907 -6.076 18.856 hybrid contribution -0.810 0.205 0.470 0.958 sum 4.917 -16.702 -5.606 18.291 Atomic orbital electron populations 1.23250 0.73882 1.03581 1.03152 1.86222 1.24590 1.30815 1.87021 1.18149 0.83254 0.82438 0.76506 1.91071 1.64282 1.34406 1.53424 1.41920 1.03300 1.09339 1.75464 1.17097 0.92837 0.83186 0.96668 1.20433 0.98173 0.98662 1.06300 1.20577 0.98357 0.91415 0.96856 1.20675 0.97689 0.99667 1.05784 1.17790 0.91386 0.87012 0.90341 1.45448 1.27524 1.05829 1.56808 1.19973 0.94318 0.80754 0.98381 1.18959 1.05350 1.04967 0.95121 1.20578 0.95351 0.96684 0.97482 1.21389 1.01756 1.01019 0.94598 1.17684 0.89822 0.89766 0.91524 1.19694 0.99176 1.18748 1.11000 0.90299 1.25962 0.97426 0.97252 0.93842 1.69823 1.12685 1.34086 1.24885 0.86227 0.79241 0.81455 0.79629 1.18353 1.19634 1.19910 1.20981 1.03784 1.01924 0.98235 1.20396 0.97950 0.97259 0.93376 1.20604 1.03672 0.91089 1.07299 0.91612 0.87823 0.91536 0.74866 0.86421 0.85976 0.85987 0.76296 0.93111 0.93080 0.89418 0.86069 0.90789 0.88938 0.89426 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -3.90 10.62 -40.35 -0.43 -4.33 16 3 C 0.64 8.37 8.59 54.06 0.46 8.84 16 4 O -0.55 -9.07 13.60 -19.28 -0.26 -9.34 16 5 N -0.65 -7.18 5.34 -14.29 -0.08 -7.25 16 6 C 0.20 2.58 6.29 -83.72 -0.53 2.05 16 7 C -0.21 -2.42 9.96 -39.36 -0.39 -2.82 16 8 C -0.05 -0.61 10.03 -39.64 -0.40 -1.01 16 9 C -0.21 -2.97 9.31 -39.34 -0.37 -3.33 16 10 C 0.24 3.83 6.65 -83.81 -0.56 3.27 16 11 N -0.73 -12.38 5.72 -59.83 -0.34 -12.72 16 12 C 0.19 3.26 5.03 -5.19 -0.03 3.23 16 13 C -0.24 -5.06 5.27 -104.33 -0.55 -5.61 16 14 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 15 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 16 C 0.11 3.01 5.58 -106.83 -0.60 2.41 16 17 C -0.46 -11.93 9.07 -37.74 -0.34 -12.27 16 18 H 0.08 1.98 7.89 -52.48 -0.41 1.57 16 19 C 0.07 1.81 5.20 -17.34 -0.09 1.72 16 20 N -0.79 -20.17 10.82 55.55 0.60 -19.57 16 21 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 26 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 27 C -0.20 -3.15 8.53 -39.20 -0.33 -3.49 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.42 3.11 8.93 -40.82 -0.36 2.75 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.59 6.72 -52.48 -0.35 1.24 16 35 H 0.40 7.20 8.47 -40.82 -0.35 6.86 16 36 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.05 0.85 7.88 -51.93 -0.41 0.45 16 38 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 39 H 0.12 3.22 6.07 -52.49 -0.32 2.90 16 40 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 41 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 42 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 43 H 0.14 2.32 6.27 -52.49 -0.33 1.99 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -29.51 368.03 -9.58 -39.10 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -5.46 Total: 15.43 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -4.13 Total: -20.22 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.18 Total: -39.55 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.69 Total: -13.67 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.51 -9.58 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495141587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.173 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds