Wall clock time and date at job start Tue Mar 31 2020 14:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34649 * 116.99662 * 2 1 4 4 O 1.21509 * 120.00267 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99520 * 179.97438 * 3 2 1 6 6 C 1.39950 * 119.99755 * 175.48049 * 5 3 2 7 7 C 1.38944 * 120.03009 * 215.50735 * 6 5 3 8 8 C 1.38141 * 120.07547 * 180.02562 * 7 6 5 9 9 C 1.38170 * 120.14567 * 0.04365 * 8 7 6 10 10 C 1.38943 * 120.06201 * 0.02562 * 9 8 7 11 11 N 1.39675 * 120.03679 * 179.97438 * 10 9 8 12 12 C 1.46498 * 120.00264 * 0.02562 * 11 10 9 13 13 C 1.50702 * 109.47163 * 179.97438 * 12 11 10 14 14 C 1.38628 * 119.74909 * 269.73064 * 13 12 11 15 15 C 1.37628 * 120.24708 * 179.72202 * 14 13 12 16 16 C 1.40711 * 119.74083 * 0.56913 * 15 14 13 17 17 C 1.41396 * 120.23904 * 179.68330 * 16 15 14 18 18 H 1.08009 * 119.99990 * 204.60055 * 17 16 15 19 19 C 1.39942 * 120.00298 * 24.60268 * 17 16 15 20 20 N 1.30828 * 119.99916 * 15.33510 * 19 17 16 21 21 Si 1.86807 * 120.00138 * 195.33308 * 19 17 16 22 22 H 1.48497 * 109.46951 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46983 * 120.00087 * 21 19 17 24 24 H 1.48498 * 109.46929 * 240.00003 * 21 19 17 25 25 C 1.40711 * 119.51779 * 359.70215 * 16 15 14 26 26 C 1.37625 * 119.73919 * 0.02562 * 25 16 15 27 27 C 1.38707 * 120.02899 * 35.58376 * 6 5 3 28 28 H 1.09003 * 109.46973 * 60.00337 * 1 2 3 29 29 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47217 * 300.00367 * 1 2 3 31 31 H 0.97002 * 119.99933 * 355.48565 * 5 3 2 32 32 H 1.08000 * 119.96132 * 0.02562 * 7 6 5 33 33 H 1.07998 * 119.92918 * 180.02562 * 8 7 6 34 34 H 1.08006 * 119.97296 * 179.97438 * 9 8 7 35 35 H 0.97001 * 119.99782 * 180.02562 * 11 10 9 36 36 H 1.08998 * 109.47010 * 300.00056 * 12 11 10 37 37 H 1.09001 * 109.46833 * 59.99971 * 12 11 10 38 38 H 1.08004 * 119.88137 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.12725 * 180.27407 * 15 14 13 40 40 H 0.97005 * 119.99586 * 179.97438 * 20 19 17 41 41 H 1.07998 * 120.13254 * 179.97438 * 25 16 15 42 42 H 1.08003 * 119.86960 * 180.02562 * 26 25 16 43 43 H 1.07997 * 120.07344 * 0.24243 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0448 2.5135 -0.0950 7 6 5.2362 2.6330 -0.7999 8 6 5.8646 3.8596 -0.8943 9 6 5.3116 4.9711 -0.2878 10 6 4.1212 4.8579 0.4198 11 7 3.5630 5.9818 1.0332 12 6 4.2322 7.2809 0.9302 13 6 3.4309 8.3191 1.6725 14 6 2.4495 9.0365 1.0062 15 6 1.7076 9.9829 1.6755 16 6 1.9567 10.2295 3.0383 17 6 1.2054 11.2043 3.7345 18 1 1.6182 11.6786 4.6127 19 6 -0.0730 11.5545 3.2858 20 7 -0.6956 10.7917 2.4244 21 14 -0.8905 13.1111 3.9169 22 1 0.0163 13.7929 4.8750 23 1 -1.1762 14.0176 2.7759 24 1 -2.1611 12.7605 4.6008 25 6 2.9592 9.4994 3.7030 26 6 3.6848 8.5537 3.0151 27 6 3.4868 3.6271 0.5153 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9373 0.4593 0.0670 32 1 5.6714 1.7660 -1.2745 33 1 6.7903 3.9499 -1.4432 34 1 5.8055 5.9286 -0.3631 35 1 2.7321 5.9021 1.5274 36 1 5.2292 7.2114 1.3653 37 1 4.3126 7.5660 -0.1188 38 1 2.2635 8.8491 -0.0410 39 1 0.9405 10.5376 1.1556 40 1 -1.5820 11.0344 2.1136 41 1 3.1590 9.6808 4.7487 42 1 4.4545 7.9917 3.5233 43 1 2.5635 3.5355 1.0681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495141587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:46 Heat of formation + Delta-G solvation = -49.277947 kcal Electronic energy + Delta-G solvation = -25697.612791 eV Core-core repulsion = 21899.527124 eV Total energy + Delta-G solvation = -3798.085667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95443 -40.34326 -39.53695 -37.94107 -36.90171 -35.84902 -34.99409 -32.47971 -31.23680 -30.95411 -29.93641 -28.30656 -27.88708 -25.38476 -24.21710 -22.93895 -22.90065 -22.17131 -21.41177 -20.02807 -19.26870 -18.72350 -17.90760 -17.66715 -17.27208 -17.01145 -16.61895 -15.97269 -15.84974 -15.73493 -15.31455 -15.14092 -14.92321 -14.48907 -14.46235 -14.23068 -14.22264 -13.85250 -13.49331 -13.37039 -13.04299 -12.89198 -12.76376 -12.61826 -12.50733 -12.35823 -12.06715 -11.88806 -11.80080 -11.51780 -11.36927 -11.30288 -11.07992 -10.69348 -9.42621 -9.30285 -9.26230 -8.66738 -8.24435 -6.40358 0.38690 0.74835 0.83484 1.06095 1.10971 1.36043 1.45262 1.51592 1.64331 2.17774 2.52039 2.88022 3.01631 3.21355 3.72368 4.08853 4.17596 4.30143 4.31730 4.33135 4.36325 4.42042 4.49264 4.56784 4.64765 4.67711 4.71888 4.73070 4.86396 5.01769 5.12024 5.17728 5.33818 5.36328 5.41183 5.42437 5.50089 5.66142 5.68326 5.88953 6.03943 6.06608 6.19032 6.26605 6.33662 6.54117 6.66262 6.83079 6.89610 6.98735 7.15738 8.28799 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.002396 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.995643 B =11682.310365 C =13184.024391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.365 6.365 3 C 0.640 3.360 4 O -0.588 6.588 5 N -0.634 5.634 6 C 0.187 3.813 7 C -0.197 4.197 8 C -0.047 4.047 9 C -0.221 4.221 10 C 0.221 3.779 11 N -0.742 5.742 12 C 0.199 3.801 13 C -0.225 4.225 14 C -0.087 4.087 15 C -0.193 4.193 16 C 0.082 3.918 17 C -0.496 4.496 18 H 0.077 0.923 19 C 0.032 3.968 20 N -0.825 5.825 21 Si 0.985 3.015 22 H -0.257 1.257 23 H -0.264 1.264 24 H -0.266 1.266 25 C -0.245 4.245 26 C -0.071 4.071 27 C -0.223 4.223 28 H 0.060 0.940 29 H 0.143 0.857 30 H 0.058 0.942 31 H 0.433 0.567 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.130 0.870 35 H 0.392 0.608 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.288 0.712 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.360 -19.506 -7.015 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.279 6.279 3 C 0.394 3.606 4 O -0.478 6.478 5 N -0.288 5.288 6 C 0.094 3.906 7 C -0.219 4.219 8 C -0.066 4.066 9 C -0.244 4.244 10 C 0.115 3.885 11 N -0.368 5.368 12 C 0.076 3.924 13 C -0.226 4.226 14 C -0.106 4.106 15 C -0.212 4.212 16 C 0.080 3.920 17 C -0.525 4.525 18 H 0.095 0.905 19 C -0.183 4.183 20 N -0.451 5.451 21 Si 0.805 3.195 22 H -0.180 1.180 23 H -0.188 1.188 24 H -0.191 1.191 25 C -0.264 4.264 26 C -0.089 4.089 27 C -0.249 4.249 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.273 0.727 32 H 0.172 0.828 33 H 0.177 0.823 34 H 0.148 0.852 35 H 0.226 0.774 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.814 -18.961 -7.172 21.726 hybrid contribution -1.332 0.559 0.709 1.609 sum 6.482 -18.402 -6.463 20.553 Atomic orbital electron populations 1.23558 0.72480 1.05957 1.02544 1.86247 1.25911 1.29185 1.86522 1.18396 0.83732 0.82531 0.75928 1.91055 1.65351 1.36014 1.55381 1.41808 1.02812 1.09578 1.74552 1.17286 0.93530 0.83195 0.96626 1.20862 0.96706 0.99978 1.04399 1.21028 0.99210 0.90530 0.95805 1.20919 0.96943 1.01033 1.05530 1.17949 0.92500 0.86464 0.91557 1.45226 1.27518 1.06102 1.57986 1.19859 0.94216 0.79930 0.98362 1.19326 1.03920 1.04377 0.94984 1.20795 0.95392 0.96165 0.98239 1.21346 1.02578 1.02484 0.94830 1.18022 0.91041 0.90836 0.92112 1.19925 1.00444 1.20253 1.11866 0.90524 1.26821 0.97507 1.00150 0.93831 1.69885 1.13329 1.35741 1.26155 0.85117 0.78119 0.77086 0.79140 1.18023 1.18827 1.19086 1.21193 1.03932 1.02515 0.98786 1.20709 0.98008 0.96494 0.93739 1.20548 1.03341 0.92394 1.08576 0.92135 0.83886 0.92344 0.72667 0.82763 0.82318 0.85167 0.77443 0.91303 0.92254 0.88060 0.87952 0.90152 0.88401 0.86524 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 10.56 113.37 1.20 1.91 16 2 O -0.37 -7.21 10.62 -55.59 -0.59 -7.80 16 3 C 0.64 16.35 8.59 129.79 1.11 17.47 16 4 O -0.59 -20.14 13.60 19.81 0.27 -19.87 16 5 N -0.63 -12.94 5.34 -429.52 -2.29 -15.24 16 6 C 0.19 4.60 6.29 38.13 0.24 4.84 16 7 C -0.20 -3.70 9.96 22.42 0.22 -3.48 16 8 C -0.05 -0.89 10.03 22.23 0.22 -0.67 16 9 C -0.22 -5.52 9.31 22.42 0.21 -5.31 16 10 C 0.22 6.79 6.65 38.20 0.25 7.04 16 11 N -0.74 -24.95 5.72 -343.19 -1.96 -26.92 16 12 C 0.20 6.59 5.03 85.63 0.43 7.02 16 13 C -0.22 -9.30 5.27 -19.68 -0.10 -9.40 16 14 C -0.09 -4.05 9.67 22.22 0.21 -3.84 16 15 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16 16 C 0.08 4.50 5.58 -21.29 -0.12 4.38 16 17 C -0.50 -27.05 9.07 23.46 0.21 -26.84 16 18 H 0.08 4.03 7.89 -2.91 -0.02 4.01 16 19 C 0.03 1.61 5.20 85.26 0.44 2.05 16 20 N -0.83 -43.97 10.82 21.83 0.24 -43.73 16 21 Si 0.98 38.62 29.59 68.60 2.03 40.65 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 25 C -0.24 -12.05 9.80 22.73 0.22 -11.82 16 26 C -0.07 -3.05 9.67 22.22 0.21 -2.83 16 27 C -0.22 -6.99 8.53 22.52 0.19 -6.79 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.43 5.32 8.93 -92.71 -0.83 4.49 16 32 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.13 2.99 6.72 -2.91 -0.02 2.97 16 35 H 0.39 14.47 8.47 -92.71 -0.79 13.68 16 36 H 0.07 2.05 7.88 -2.39 -0.02 2.03 16 37 H 0.06 1.87 7.88 -2.39 -0.02 1.85 16 38 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.10 5.77 6.07 -2.91 -0.02 5.75 16 40 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 41 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.11 3.94 6.27 -2.91 -0.02 3.92 16 Total: -1.00 -68.00 368.03 2.50 -65.50 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -0.55 Total: 43.78 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 5.37 Total: -36.37 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -4.02 Total: -85.89 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.32 Total: -27.68 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -68.00 2.50 -65.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495141587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.221 kcal (2) G-P(sol) polarization free energy of solvation -67.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds