Wall clock time and date at job start Tue Mar 31 2020 14:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34778 * 120.00010 * 2 1 4 4 O 1.21513 * 120.00073 * 0.02562 * 3 2 1 5 5 O 1.34681 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.35940 * 117.00056 * 181.13073 * 5 3 2 7 7 C 1.38803 * 120.01651 * 283.51968 * 6 5 3 8 8 C 1.38170 * 120.09759 * 179.97438 * 7 6 5 9 9 C 1.38162 * 120.12184 * 359.76625 * 8 7 6 10 10 C 1.38928 * 120.03519 * 0.50660 * 9 8 7 11 11 N 1.39667 * 120.04448 * 179.74171 * 10 9 8 12 12 C 1.46498 * 120.00461 * 359.73129 * 11 10 9 13 13 C 1.50702 * 109.47057 * 179.97438 * 12 11 10 14 14 C 1.38639 * 119.74561 * 90.00262 * 13 12 11 15 15 C 1.37622 * 120.24369 * 180.27461 * 14 13 12 16 16 C 1.40712 * 119.74649 * 359.51762 * 15 14 13 17 17 C 1.41391 * 120.24458 * 180.22981 * 16 15 14 18 18 H 1.08007 * 120.00124 * 203.72425 * 17 16 15 19 19 C 1.39944 * 120.00059 * 23.73018 * 17 16 15 20 20 N 1.30818 * 120.00298 * 19.90931 * 19 17 16 21 21 Si 1.86802 * 119.99884 * 199.91870 * 19 17 16 22 22 H 1.48501 * 109.47397 * 89.99425 * 21 19 17 23 23 H 1.48497 * 109.46938 * 209.99545 * 21 19 17 24 24 H 1.48493 * 109.47143 * 329.99307 * 21 19 17 25 25 C 1.40719 * 119.51120 * 0.47895 * 16 15 14 26 26 C 1.37622 * 119.74217 * 359.75006 * 25 16 15 27 27 C 1.38557 * 120.01906 * 103.49857 * 6 5 3 28 28 H 1.08997 * 109.47771 * 299.99772 * 1 2 3 29 29 H 1.09006 * 109.47343 * 59.99545 * 1 2 3 30 30 H 1.08998 * 109.47242 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00450 * 180.02562 * 2 1 3 32 32 H 1.08005 * 119.95047 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.94091 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.98256 * 180.25867 * 9 8 7 35 35 H 0.97010 * 119.99522 * 179.72828 * 11 10 9 36 36 H 1.09000 * 109.47150 * 59.99636 * 12 11 10 37 37 H 1.08999 * 109.47180 * 299.99776 * 12 11 10 38 38 H 1.07995 * 119.87707 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.12119 * 179.71889 * 15 14 13 40 40 H 0.97000 * 120.00578 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.12763 * 179.73319 * 25 16 15 42 42 H 1.08000 * 119.86902 * 180.02562 * 26 25 16 43 43 H 1.08005 * 120.06367 * 0.04139 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0005 5 8 3.4856 1.1672 0.0005 6 6 4.1027 2.3782 0.0244 7 6 4.1681 3.1471 -1.1294 8 6 4.7945 4.3784 -1.1069 9 6 5.3536 4.8506 0.0650 10 6 5.2963 4.0830 1.2215 11 7 5.8661 4.5577 2.4050 12 6 6.5301 5.8634 2.4260 13 6 7.0548 6.1379 3.8118 14 6 8.3374 5.7375 4.1535 15 6 8.8249 5.9779 5.4178 16 6 8.0199 6.6417 6.3619 17 6 8.5119 6.8984 7.6624 18 1 7.8231 7.0426 8.4817 19 6 9.8914 6.9659 7.8879 20 7 10.7078 7.1826 6.8889 21 14 10.5672 6.7461 9.6155 22 1 10.8489 5.3083 9.8577 23 1 11.8218 7.5274 9.7593 24 1 9.5681 7.2280 10.6028 25 6 6.7197 7.0436 6.0039 26 6 6.2513 6.7885 4.7352 27 6 4.6665 2.8459 1.2005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9499 -0.8400 -0.0004 32 1 3.7286 2.7823 -2.0460 33 1 4.8435 4.9748 -2.0059 34 1 5.8390 5.8153 0.0811 35 1 5.8222 4.0228 3.2131 36 1 5.8161 6.6387 2.1480 37 1 7.3583 5.8614 1.7173 38 1 8.9545 5.2308 3.4263 39 1 9.8227 5.6610 5.6833 40 1 11.6640 7.2290 7.0452 41 1 6.0918 7.5499 6.7220 42 1 5.2539 7.0963 4.4581 43 1 4.6169 2.2487 2.0991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496350810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:49 Heat of formation + Delta-G solvation = -26.655110 kcal Electronic energy + Delta-G solvation = -25452.445837 eV Core-core repulsion = 21655.341170 eV Total energy + Delta-G solvation = -3797.104667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26882 -39.15374 -37.89458 -37.19154 -35.11545 -34.98451 -33.64774 -31.06264 -30.25762 -29.40523 -28.65492 -27.31365 -26.38708 -23.97207 -22.87133 -22.36446 -21.11209 -20.85699 -20.00756 -19.27629 -17.79323 -17.41110 -16.96939 -16.42847 -15.83921 -15.54455 -15.33451 -15.11272 -14.48716 -14.25667 -14.18402 -14.00649 -13.65108 -13.49478 -13.28560 -13.06109 -12.67554 -12.57546 -12.08402 -12.05833 -11.96867 -11.65250 -11.42741 -11.21377 -11.13439 -10.92384 -10.82069 -10.61753 -10.51595 -9.86036 -9.70349 -9.65042 -9.48853 -9.23006 -8.74130 -7.59735 -7.49428 -7.18653 -6.90852 -4.48002 1.09852 1.65992 2.20384 2.55524 2.57559 2.96424 3.00155 3.03639 3.05876 3.79457 3.83564 3.91107 4.21769 4.53317 4.75983 4.95878 5.08188 5.22257 5.30286 5.33863 5.50501 5.57911 5.59439 5.64832 5.82349 5.86202 5.92844 6.15230 6.22664 6.29924 6.31501 6.37405 6.47476 6.58261 6.84723 6.95493 6.97262 7.02568 7.15947 7.23868 7.48957 7.58483 7.72944 7.93419 7.98914 8.05517 8.14497 8.17724 8.51531 8.76515 8.84618 10.03741 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.002006 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.505425 B =13955.386552 C =14583.825964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.714 5.714 3 C 0.641 3.359 4 O -0.550 6.550 5 O -0.307 6.307 6 C 0.145 3.855 7 C -0.188 4.188 8 C -0.057 4.057 9 C -0.197 4.197 10 C 0.240 3.760 11 N -0.731 5.731 12 C 0.188 3.812 13 C -0.246 4.246 14 C -0.079 4.079 15 C -0.172 4.172 16 C 0.117 3.883 17 C -0.459 4.459 18 H 0.080 0.920 19 C 0.077 3.923 20 N -0.784 5.784 21 Si 0.909 3.091 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.231 4.231 26 C -0.068 4.068 27 C -0.202 4.202 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.409 0.591 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.401 0.599 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.283 0.717 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.560 -12.062 -12.837 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.373 5.373 3 C 0.394 3.606 4 O -0.436 6.436 5 O -0.219 6.219 6 C 0.102 3.898 7 C -0.209 4.209 8 C -0.076 4.076 9 C -0.220 4.220 10 C 0.132 3.868 11 N -0.357 5.357 12 C 0.065 3.935 13 C -0.248 4.248 14 C -0.098 4.098 15 C -0.191 4.191 16 C 0.114 3.886 17 C -0.487 4.487 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.408 5.408 21 Si 0.733 3.267 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.251 4.251 26 C -0.087 4.087 27 C -0.226 4.226 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.244 0.756 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.236 0.764 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.480 -11.210 -12.883 20.577 hybrid contribution 0.594 -0.632 1.071 1.378 sum -10.886 -11.842 -11.812 19.956 Atomic orbital electron populations 1.21586 0.76402 1.02838 1.02943 1.44391 1.07529 1.06407 1.79007 1.18455 0.80761 0.84774 0.76583 1.91057 1.68110 1.30489 1.53952 1.84235 1.19242 1.32171 1.86229 1.17845 0.95070 0.83394 0.93450 1.20856 1.06293 0.96134 0.97603 1.20673 0.95126 0.94343 0.97437 1.20767 1.07516 1.01631 0.92080 1.17660 0.90487 0.91077 0.87559 1.45448 1.60206 1.21251 1.08783 1.19983 0.94601 0.83032 0.95845 1.18913 0.96613 1.14272 0.95021 1.20543 0.94156 0.98913 0.96225 1.21279 1.01049 1.03394 0.93425 1.17668 0.90720 0.87344 0.92835 1.19670 0.91636 1.42458 0.94985 0.90209 1.25963 0.97204 0.91915 0.99188 1.69829 1.05111 1.32485 1.33403 0.86297 0.78745 0.79425 0.82236 1.19138 1.20210 1.18501 1.20960 0.98564 1.09484 0.96080 1.20408 0.96823 0.97736 0.93743 1.20429 1.07934 0.96706 0.97505 0.91725 0.91795 0.89697 0.75642 0.86399 0.85635 0.85514 0.76399 0.93029 0.92924 0.89421 0.86555 0.90624 0.88913 0.89400 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 10.70 59.84 0.64 1.25 16 2 N -0.71 -5.77 5.72 -72.12 -0.41 -6.18 16 3 C 0.64 8.24 8.62 54.06 0.47 8.71 16 4 O -0.55 -9.03 15.91 -19.28 -0.31 -9.34 16 5 O -0.31 -4.09 10.08 -24.76 -0.25 -4.34 16 6 C 0.14 2.12 5.12 -39.25 -0.20 1.92 16 7 C -0.19 -2.56 9.61 -39.40 -0.38 -2.94 16 8 C -0.06 -0.72 10.03 -39.63 -0.40 -1.12 16 9 C -0.20 -2.76 9.31 -39.35 -0.37 -3.12 16 10 C 0.24 3.64 6.65 -83.81 -0.56 3.08 16 11 N -0.73 -11.57 5.72 -59.83 -0.34 -11.91 16 12 C 0.19 3.16 5.02 -5.19 -0.03 3.13 16 13 C -0.25 -5.03 5.27 -104.33 -0.55 -5.58 16 14 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 15 C -0.17 -4.30 8.71 -38.87 -0.34 -4.64 16 16 C 0.12 3.02 5.58 -106.83 -0.60 2.42 16 17 C -0.46 -11.81 9.04 -37.74 -0.34 -12.15 16 18 H 0.08 1.98 7.92 -52.48 -0.42 1.56 16 19 C 0.08 1.86 5.10 -17.34 -0.09 1.77 16 20 N -0.78 -19.63 11.04 55.55 0.61 -19.02 16 21 Si 0.91 18.07 29.60 -169.99 -5.03 13.04 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 26 C -0.07 -1.46 9.67 -39.66 -0.38 -1.85 16 27 C -0.20 -3.02 9.83 -39.24 -0.39 -3.40 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.41 2.12 8.94 -40.82 -0.36 1.76 16 32 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.13 1.64 6.73 -52.49 -0.35 1.29 16 35 H 0.40 6.37 8.48 -40.82 -0.35 6.02 16 36 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 37 H 0.05 0.85 7.90 -51.93 -0.41 0.44 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.12 3.01 6.19 -52.49 -0.32 2.69 16 40 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 41 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 42 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.13 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -29.79 372.20 -9.95 -39.74 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.56 Total: 12.93 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -4.27 Total: -20.53 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.14 Total: -37.11 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.56 Total: -13.68 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.79 -9.95 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496350810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.086 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds