Wall clock time and date at job start Tue Mar 31 2020 14:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.34778 * 120.00010 * 2 1 4 4 O 1.21513 * 120.00073 * 0.02562 * 3 2 1 5 5 O 1.34681 * 120.00039 * 179.97438 * 3 2 1 6 6 C 1.35940 * 117.00056 * 181.13073 * 5 3 2 7 7 C 1.38803 * 120.01651 * 283.51968 * 6 5 3 8 8 C 1.38170 * 120.09759 * 179.97438 * 7 6 5 9 9 C 1.38162 * 120.12184 * 359.76625 * 8 7 6 10 10 C 1.38928 * 120.03519 * 0.50660 * 9 8 7 11 11 N 1.39667 * 120.04448 * 179.74171 * 10 9 8 12 12 C 1.46498 * 120.00461 * 359.73129 * 11 10 9 13 13 C 1.50702 * 109.47057 * 179.97438 * 12 11 10 14 14 C 1.38639 * 119.74561 * 90.00262 * 13 12 11 15 15 C 1.37622 * 120.24369 * 180.27461 * 14 13 12 16 16 C 1.40712 * 119.74649 * 359.51762 * 15 14 13 17 17 C 1.41391 * 120.24458 * 180.22981 * 16 15 14 18 18 H 1.08007 * 120.00124 * 203.72425 * 17 16 15 19 19 C 1.39944 * 120.00059 * 23.73018 * 17 16 15 20 20 N 1.30818 * 120.00298 * 19.90931 * 19 17 16 21 21 Si 1.86802 * 119.99884 * 199.91870 * 19 17 16 22 22 H 1.48501 * 109.47397 * 89.99425 * 21 19 17 23 23 H 1.48497 * 109.46938 * 209.99545 * 21 19 17 24 24 H 1.48493 * 109.47143 * 329.99307 * 21 19 17 25 25 C 1.40719 * 119.51120 * 0.47895 * 16 15 14 26 26 C 1.37622 * 119.74217 * 359.75006 * 25 16 15 27 27 C 1.38557 * 120.01906 * 103.49857 * 6 5 3 28 28 H 1.08997 * 109.47771 * 299.99772 * 1 2 3 29 29 H 1.09006 * 109.47343 * 59.99545 * 1 2 3 30 30 H 1.08998 * 109.47242 * 179.97438 * 1 2 3 31 31 H 0.96998 * 120.00450 * 180.02562 * 2 1 3 32 32 H 1.08005 * 119.95047 * 359.97438 * 7 6 5 33 33 H 1.07998 * 119.94091 * 180.02562 * 8 7 6 34 34 H 1.08001 * 119.98256 * 180.25867 * 9 8 7 35 35 H 0.97010 * 119.99522 * 179.72828 * 11 10 9 36 36 H 1.09000 * 109.47150 * 59.99636 * 12 11 10 37 37 H 1.08999 * 109.47180 * 299.99776 * 12 11 10 38 38 H 1.07995 * 119.87707 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.12119 * 179.71889 * 15 14 13 40 40 H 0.97000 * 120.00578 * 180.02562 * 20 19 17 41 41 H 1.07995 * 120.12763 * 179.73319 * 25 16 15 42 42 H 1.08000 * 119.86902 * 180.02562 * 26 25 16 43 43 H 1.08005 * 120.06367 * 0.04139 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2195 0.0005 5 8 3.4856 1.1672 0.0005 6 6 4.1027 2.3782 0.0244 7 6 4.1681 3.1471 -1.1294 8 6 4.7945 4.3784 -1.1069 9 6 5.3536 4.8506 0.0650 10 6 5.2963 4.0830 1.2215 11 7 5.8661 4.5577 2.4050 12 6 6.5301 5.8634 2.4260 13 6 7.0548 6.1379 3.8118 14 6 8.3374 5.7375 4.1535 15 6 8.8249 5.9779 5.4178 16 6 8.0199 6.6417 6.3619 17 6 8.5119 6.8984 7.6624 18 1 7.8231 7.0426 8.4817 19 6 9.8914 6.9659 7.8879 20 7 10.7078 7.1826 6.8889 21 14 10.5672 6.7461 9.6155 22 1 10.8489 5.3083 9.8577 23 1 11.8218 7.5274 9.7593 24 1 9.5681 7.2280 10.6028 25 6 6.7197 7.0436 6.0039 26 6 6.2513 6.7885 4.7352 27 6 4.6665 2.8459 1.2005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9499 -0.8400 -0.0004 32 1 3.7286 2.7823 -2.0460 33 1 4.8435 4.9748 -2.0059 34 1 5.8390 5.8153 0.0811 35 1 5.8222 4.0228 3.2131 36 1 5.8161 6.6387 2.1480 37 1 7.3583 5.8614 1.7173 38 1 8.9545 5.2308 3.4263 39 1 9.8227 5.6610 5.6833 40 1 11.6640 7.2290 7.0452 41 1 6.0918 7.5499 6.7220 42 1 5.2539 7.0963 4.4581 43 1 4.6169 2.2487 2.0991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496350810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:48 Heat of formation + Delta-G solvation = -44.091117 kcal Electronic energy + Delta-G solvation = -25453.201919 eV Core-core repulsion = 21655.341170 eV Total energy + Delta-G solvation = -3797.860749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27160 -40.28267 -39.49595 -38.28983 -36.48042 -35.86463 -35.27943 -32.54970 -31.44763 -31.19139 -30.00224 -27.99300 -27.92334 -25.45060 -23.99689 -23.40309 -22.92115 -22.05812 -21.51976 -20.22549 -19.26242 -18.84634 -18.09200 -17.47076 -17.19249 -16.86909 -16.45258 -16.02209 -15.87469 -15.77148 -15.48476 -15.26269 -15.00417 -14.57773 -14.46160 -14.26291 -14.15534 -13.84957 -13.44635 -13.24522 -13.10026 -13.05354 -12.89619 -12.78669 -12.60603 -12.28928 -12.15831 -12.00370 -11.85303 -11.47077 -11.32687 -11.06312 -10.93417 -10.38300 -9.80706 -9.42102 -9.32412 -8.70923 -8.35864 -6.38540 0.05818 0.58647 0.83973 1.11447 1.30900 1.36645 1.47587 1.49752 1.58657 2.17768 2.48372 2.82128 2.84784 3.32979 3.72187 3.94726 4.15330 4.19522 4.25060 4.33101 4.34782 4.48748 4.52789 4.58485 4.59880 4.66976 4.70259 4.85986 4.92608 5.02011 5.12509 5.12868 5.24500 5.33842 5.37721 5.41375 5.42908 5.52810 5.66279 5.88310 5.95370 6.06127 6.18894 6.28652 6.33961 6.41445 6.65739 6.80589 6.89362 6.98818 7.23691 8.26455 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021675 B = 0.002006 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.505425 B =13955.386552 C =14583.825964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.693 5.693 3 C 0.633 3.367 4 O -0.592 6.592 5 O -0.307 6.307 6 C 0.130 3.870 7 C -0.193 4.193 8 C -0.052 4.052 9 C -0.203 4.203 10 C 0.227 3.773 11 N -0.735 5.735 12 C 0.197 3.803 13 C -0.227 4.227 14 C -0.081 4.081 15 C -0.196 4.196 16 C 0.085 3.915 17 C -0.499 4.499 18 H 0.075 0.925 19 C 0.037 3.963 20 N -0.817 5.817 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.259 1.259 25 C -0.248 4.248 26 C -0.069 4.069 27 C -0.215 4.215 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.425 0.575 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.290 0.710 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 -13.025 -14.363 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.354 5.354 3 C 0.387 3.613 4 O -0.481 6.481 5 O -0.219 6.219 6 C 0.087 3.913 7 C -0.213 4.213 8 C -0.071 4.071 9 C -0.225 4.225 10 C 0.121 3.879 11 N -0.362 5.362 12 C 0.075 3.925 13 C -0.229 4.229 14 C -0.100 4.100 15 C -0.215 4.215 16 C 0.083 3.917 17 C -0.527 4.527 18 H 0.093 0.907 19 C -0.179 4.179 20 N -0.443 5.443 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.182 1.182 25 C -0.267 4.267 26 C -0.088 4.088 27 C -0.238 4.238 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.262 0.738 32 H 0.149 0.851 33 H 0.176 0.824 34 H 0.157 0.843 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.415 -12.223 -14.438 22.627 hybrid contribution 0.717 -0.429 1.330 1.571 sum -11.697 -12.652 -13.108 21.650 Atomic orbital electron populations 1.21852 0.74774 1.05460 1.02169 1.44502 1.08401 1.05610 1.76853 1.18800 0.80405 0.85570 0.76548 1.91021 1.68614 1.32230 1.56220 1.84227 1.19678 1.31675 1.86298 1.18070 0.95379 0.84025 0.93814 1.21148 1.06006 0.96415 0.97765 1.21040 0.93692 0.94100 0.98223 1.21017 1.07506 1.02002 0.92017 1.17766 0.91068 0.91467 0.87621 1.45176 1.60958 1.20889 1.09147 1.19863 0.95340 0.83948 0.93389 1.19259 0.95535 1.11615 0.96496 1.20776 0.95163 0.98565 0.95512 1.21249 1.00652 1.04815 0.94820 1.18002 0.91899 0.88340 0.93490 1.19883 0.92767 1.44895 0.95200 0.90654 1.26774 0.96910 0.90961 1.03278 1.69870 1.05659 1.33256 1.35466 0.85213 0.78161 0.79450 0.76981 1.18683 1.19104 1.18237 1.21153 0.98200 1.09999 0.97398 1.20704 0.98031 0.97159 0.92909 1.20524 1.08409 0.97010 0.97895 0.92801 0.92286 0.85358 0.73793 0.85149 0.82429 0.84299 0.76657 0.91743 0.91826 0.87600 0.88328 0.89922 0.88658 0.86810 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 10.70 127.77 1.37 2.32 16 2 N -0.69 -9.97 5.72 -612.47 -3.50 -13.47 16 3 C 0.63 15.73 8.62 129.79 1.12 16.85 16 4 O -0.59 -19.22 15.91 19.80 0.32 -18.91 16 5 O -0.31 -7.94 10.08 0.20 0.00 -7.94 16 6 C 0.13 3.68 5.12 22.48 0.12 3.80 16 7 C -0.19 -4.90 9.61 22.39 0.22 -4.69 16 8 C -0.05 -1.18 10.03 22.24 0.22 -0.96 16 9 C -0.20 -5.18 9.31 22.42 0.21 -4.97 16 10 C 0.23 6.55 6.65 38.20 0.25 6.80 16 11 N -0.73 -22.09 5.72 -343.19 -1.96 -24.05 16 12 C 0.20 6.18 5.02 85.63 0.43 6.61 16 13 C -0.23 -9.01 5.27 -19.68 -0.10 -9.11 16 14 C -0.08 -3.59 9.67 22.22 0.21 -3.38 16 15 C -0.20 -10.09 8.71 22.73 0.20 -9.89 16 16 C 0.09 4.55 5.58 -21.29 -0.12 4.43 16 17 C -0.50 -26.71 9.04 23.46 0.21 -26.50 16 18 H 0.08 3.92 7.92 -2.91 -0.02 3.89 16 19 C 0.04 1.84 5.10 85.26 0.43 2.27 16 20 N -0.82 -42.18 11.04 21.83 0.24 -41.94 16 21 Si 0.98 37.71 29.60 68.60 2.03 39.74 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 C -0.25 -11.99 9.80 22.73 0.22 -11.77 16 26 C -0.07 -2.91 9.67 22.22 0.21 -2.70 16 27 C -0.21 -6.27 9.83 22.49 0.22 -6.04 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.42 3.42 8.94 -92.71 -0.83 2.59 16 32 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.14 3.16 6.73 -2.91 -0.02 3.14 16 35 H 0.40 12.30 8.48 -92.70 -0.79 11.51 16 36 H 0.06 1.89 7.88 -2.39 -0.02 1.87 16 37 H 0.06 1.88 7.90 -2.39 -0.02 1.86 16 38 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.10 5.35 6.19 -2.91 -0.02 5.33 16 40 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 41 H 0.10 4.42 8.06 -2.91 -0.02 4.39 16 42 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 43 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -66.70 372.20 1.99 -64.71 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.56 Total: 38.79 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 5.43 Total: -36.93 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -5.22 Total: -79.46 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: 0.32 Total: -26.84 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -66.70 1.99 -64.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496350810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.618 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds