Wall clock time and date at job start Tue Mar 31 2020 14:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99825 * 2 1 4 4 C 1.50697 * 109.47229 * 270.00430 * 3 2 1 5 5 H 1.07997 * 120.00308 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99569 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00183 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99690 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47356 * 60.00011 * 8 6 4 10 10 H 1.48501 * 109.47069 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47076 * 299.99787 * 8 6 4 12 12 C 1.34777 * 120.00216 * 180.02562 * 2 1 3 13 13 O 1.21586 * 119.99873 * 184.41248 * 12 2 1 14 14 C 1.47528 * 119.99553 * 4.41576 * 12 2 1 15 15 C 1.39715 * 120.19266 * 310.87394 * 14 12 2 16 16 C 1.37787 * 119.90581 * 180.02562 * 15 14 12 17 17 C 1.38543 * 120.30265 * 359.97438 * 16 15 14 18 18 C 1.38055 * 120.39229 * 0.02562 * 17 16 15 19 19 C 1.38706 * 120.08254 * 0.02562 * 18 17 16 20 20 O 1.35656 * 120.15099 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99895 * 359.97438 * 20 19 18 22 22 C 1.50694 * 109.47308 * 180.02562 * 21 20 19 23 23 C 1.38652 * 120.78906 * 269.71890 * 22 21 20 24 24 C 1.38206 * 119.15937 * 179.79613 * 23 22 21 25 25 N 1.31867 * 120.76782 * 0.48637 * 24 23 22 26 26 C 1.31866 * 121.72324 * 359.74478 * 25 24 23 27 27 C 1.38210 * 120.76593 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47245 * 273.01454 * 1 2 3 29 29 H 1.09006 * 109.47312 * 33.01513 * 1 2 3 30 30 H 1.09000 * 109.47340 * 153.01176 * 1 2 3 31 31 H 1.09005 * 109.46908 * 30.01015 * 3 2 1 32 32 H 1.09002 * 109.46819 * 150.00096 * 3 2 1 33 33 H 0.97001 * 119.99698 * 179.97438 * 7 6 4 34 34 H 1.07995 * 120.04544 * 359.97438 * 15 14 12 35 35 H 1.08002 * 119.84523 * 180.02562 * 16 15 14 36 36 H 1.08005 * 119.80492 * 180.02562 * 17 16 15 37 37 H 1.08002 * 119.95730 * 179.72406 * 18 17 16 38 38 H 1.09000 * 109.46951 * 300.00339 * 21 20 19 39 39 H 1.09002 * 109.47371 * 59.99879 * 21 20 19 40 40 H 1.07997 * 120.41991 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.61387 * 180.20911 * 24 23 22 42 42 H 1.08008 * 119.61755 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.41687 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8777 -1.6726 7 7 3.5541 3.6177 -0.6729 8 14 3.4386 3.4167 -3.4338 9 1 2.1413 3.5946 -4.1341 10 1 4.1810 4.7028 -3.4337 11 1 4.2411 2.3814 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3521 -1.1687 0.0805 14 6 1.4045 -2.4428 -0.0995 15 6 0.3105 -2.6902 0.7336 16 6 -0.3708 -3.8839 0.6365 17 6 0.0235 -4.8410 -0.2843 18 6 1.1027 -4.6095 -1.1136 19 6 1.8008 -3.4140 -1.0288 20 8 2.8618 -3.1853 -1.8426 21 6 3.2069 -4.2207 -2.7651 22 6 4.4009 -3.7917 -3.5782 23 6 4.2370 -3.1132 -4.7762 24 6 5.3556 -2.7319 -5.4926 25 7 6.5665 -3.0147 -5.0537 26 6 6.7600 -3.6624 -3.9215 27 6 5.6893 -4.0713 -3.1491 28 1 -0.3634 0.0540 1.0262 29 1 -0.3634 0.8618 -0.5600 30 1 -0.3634 -0.9157 -0.4664 31 1 1.6084 2.0284 0.5140 32 1 3.1499 1.1384 0.5138 33 1 4.0315 4.4433 -0.8502 34 1 -0.0002 -1.9472 1.4531 35 1 -1.2166 -4.0739 1.2807 36 1 -0.5166 -5.7737 -0.3539 37 1 1.4068 -5.3624 -1.8258 38 1 3.4496 -5.1305 -2.2159 39 1 2.3640 -4.4114 -3.4293 40 1 3.2478 -2.8824 -5.1430 41 1 5.2365 -2.2001 -6.4251 42 1 7.7668 -3.8765 -3.5943 43 1 5.8542 -4.6010 -2.2225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523323517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:45 Heat of formation + Delta-G solvation = 2.834785 kcal Electronic energy + Delta-G solvation = -27224.937943 eV Core-core repulsion = 23429.112054 eV Total energy + Delta-G solvation = -3795.825889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62049 -40.00738 -38.48965 -37.23616 -34.73485 -33.45469 -32.65446 -31.26834 -31.18273 -29.95835 -27.78346 -27.19608 -25.87963 -23.90093 -23.54383 -22.97177 -21.98437 -21.56980 -19.23715 -17.90738 -17.06173 -16.74097 -16.56457 -16.46004 -15.88857 -15.61945 -15.38852 -15.03418 -14.95784 -14.42688 -14.17122 -14.06582 -13.81595 -13.71097 -13.33768 -12.82056 -12.70676 -12.38041 -12.24540 -12.09043 -11.82248 -11.71264 -11.58067 -11.17551 -11.16770 -11.02356 -10.85987 -10.53449 -10.11975 -9.83815 -9.61289 -9.55418 -9.18486 -9.05522 -8.81608 -8.39080 -8.20233 -7.57831 -6.00101 -4.04356 1.01648 1.09486 1.10110 1.38629 3.17296 3.34014 3.36926 3.38803 3.43371 3.77348 3.88052 4.13221 4.37291 4.44424 4.47975 4.52716 4.73018 4.81017 4.88876 5.01872 5.02876 5.10027 5.16773 5.29244 5.30651 5.35200 5.53448 5.54011 5.71223 5.71305 5.83393 5.85848 5.95201 6.18164 6.18321 6.25210 6.26848 6.40433 6.61838 6.68428 7.09180 7.37883 7.49680 7.59317 7.91050 7.96789 8.28112 8.45535 8.94483 9.14626 9.60336 11.08018 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007041 B = 0.005945 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.891952 B = 4708.773394 C = 7950.901613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.553 3.447 13 O -0.526 6.526 14 C -0.146 4.146 15 C -0.053 4.053 16 C -0.166 4.166 17 C -0.069 4.069 18 C -0.219 4.219 19 C 0.172 3.828 20 O -0.282 6.282 21 C 0.098 3.902 22 C -0.048 4.048 23 C -0.146 4.146 24 C 0.098 3.902 25 N -0.480 5.480 26 C 0.096 3.904 27 C -0.145 4.145 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 -19.705 -2.906 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.339 3.661 13 O -0.402 6.402 14 C -0.150 4.150 15 C -0.072 4.072 16 C -0.184 4.184 17 C -0.087 4.087 18 C -0.238 4.238 19 C 0.125 3.875 20 O -0.193 6.193 21 C 0.023 3.977 22 C -0.056 4.056 23 C -0.166 4.166 24 C -0.059 4.059 25 N -0.189 5.189 26 C -0.060 4.060 27 C -0.165 4.165 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.134 -19.053 -3.328 20.011 hybrid contribution -0.773 -0.010 -0.507 0.924 sum -5.906 -19.063 -3.835 20.322 Atomic orbital electron populations 1.21803 0.81631 1.02651 1.00348 1.48057 1.06110 1.07514 1.71197 1.19293 0.92612 0.77822 0.97524 1.21391 1.36494 1.06193 0.92268 0.92579 1.24914 0.95356 0.96387 0.97340 1.69922 1.38390 1.14396 1.30719 0.86593 0.78353 0.77854 0.84862 1.20242 1.21111 1.20174 1.17872 0.87134 0.83015 0.78082 1.90766 1.13338 1.86866 1.49256 1.19618 0.99401 0.96249 0.99728 1.21274 0.92082 0.97107 0.96698 1.20951 1.01953 0.94335 1.01184 1.20987 0.95058 0.98717 0.93930 1.21150 1.00312 0.97313 1.05016 1.18936 0.86453 0.92531 0.89621 1.86365 1.44524 1.41627 1.46822 1.21591 0.95080 0.90264 0.90737 1.19823 0.94094 0.97347 0.94378 1.22094 1.01100 0.97877 0.95497 1.22769 0.87374 0.96261 0.99512 1.67654 1.25526 1.11224 1.14511 1.22766 0.99320 0.93730 0.90215 1.22078 0.92687 1.01002 1.00701 0.93686 0.90984 0.91991 0.94897 0.93709 0.92693 0.84641 0.85526 0.85707 0.85257 0.90668 0.90716 0.84524 0.82458 0.82457 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 9.09 59.85 0.54 1.89 16 2 N -0.60 -13.47 2.86 -184.19 -0.53 -13.99 16 3 C 0.25 6.71 5.21 -5.19 -0.03 6.68 16 4 C -0.52 -15.43 9.39 -34.44 -0.32 -15.75 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 7 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 8 Si 0.90 22.54 29.54 -169.99 -5.02 17.52 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.55 12.66 6.95 -12.47 -0.09 12.57 16 13 O -0.53 -14.41 16.09 -3.91 -0.06 -14.47 16 14 C -0.15 -2.58 4.90 -104.84 -0.51 -3.10 16 15 C -0.05 -0.72 7.61 -39.19 -0.30 -1.02 16 16 C -0.17 -1.77 10.02 -39.63 -0.40 -2.16 16 17 C -0.07 -0.69 10.03 -39.54 -0.40 -1.09 16 18 C -0.22 -2.58 9.03 -39.48 -0.36 -2.94 16 19 C 0.17 2.77 6.67 -38.70 -0.26 2.52 16 20 O -0.28 -4.97 9.17 -27.87 -0.26 -5.22 16 21 C 0.10 1.21 4.91 36.00 0.18 1.39 16 22 C -0.05 -0.65 5.55 -104.32 -0.58 -1.23 16 23 C -0.15 -1.92 9.82 -39.44 -0.39 -2.31 16 24 C 0.10 1.31 11.18 -17.55 -0.20 1.12 16 25 N -0.48 -7.06 10.36 -13.25 -0.14 -7.20 16 26 C 0.10 1.26 11.18 -17.55 -0.20 1.06 16 27 C -0.14 -1.86 9.82 -39.44 -0.39 -2.24 16 28 H 0.04 0.63 7.56 -51.93 -0.39 0.24 16 29 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 0.92 5.68 -51.93 -0.29 0.62 16 31 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.04 1.37 7.36 -51.93 -0.38 0.99 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.14 1.65 6.58 -52.49 -0.35 1.31 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 37 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 38 H 0.08 0.74 7.62 -51.93 -0.40 0.34 16 39 H 0.07 0.73 7.62 -51.93 -0.40 0.34 16 40 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 42 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 43 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -37.82 368.80 -8.95 -46.77 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.46 Total: 0.45 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.78 Total: -2.88 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.07 Total: -47.71 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.32 Total: -19.70 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.82 -8.95 -46.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523323517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.605 kcal (2) G-P(sol) polarization free energy of solvation -37.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds