Wall clock time and date at job start Tue Mar 31 2020 14:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99825 * 2 1 4 4 C 1.50697 * 109.47229 * 270.00430 * 3 2 1 5 5 H 1.07997 * 120.00308 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99569 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00183 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99690 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47356 * 60.00011 * 8 6 4 10 10 H 1.48501 * 109.47069 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47076 * 299.99787 * 8 6 4 12 12 C 1.34777 * 120.00216 * 180.02562 * 2 1 3 13 13 O 1.21586 * 119.99873 * 184.41248 * 12 2 1 14 14 C 1.47528 * 119.99553 * 4.41576 * 12 2 1 15 15 C 1.39715 * 120.19266 * 310.87394 * 14 12 2 16 16 C 1.37787 * 119.90581 * 180.02562 * 15 14 12 17 17 C 1.38543 * 120.30265 * 359.97438 * 16 15 14 18 18 C 1.38055 * 120.39229 * 0.02562 * 17 16 15 19 19 C 1.38706 * 120.08254 * 0.02562 * 18 17 16 20 20 O 1.35656 * 120.15099 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99895 * 359.97438 * 20 19 18 22 22 C 1.50694 * 109.47308 * 180.02562 * 21 20 19 23 23 C 1.38652 * 120.78906 * 269.71890 * 22 21 20 24 24 C 1.38206 * 119.15937 * 179.79613 * 23 22 21 25 25 N 1.31867 * 120.76782 * 0.48637 * 24 23 22 26 26 C 1.31866 * 121.72324 * 359.74478 * 25 24 23 27 27 C 1.38210 * 120.76593 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47245 * 273.01454 * 1 2 3 29 29 H 1.09006 * 109.47312 * 33.01513 * 1 2 3 30 30 H 1.09000 * 109.47340 * 153.01176 * 1 2 3 31 31 H 1.09005 * 109.46908 * 30.01015 * 3 2 1 32 32 H 1.09002 * 109.46819 * 150.00096 * 3 2 1 33 33 H 0.97001 * 119.99698 * 179.97438 * 7 6 4 34 34 H 1.07995 * 120.04544 * 359.97438 * 15 14 12 35 35 H 1.08002 * 119.84523 * 180.02562 * 16 15 14 36 36 H 1.08005 * 119.80492 * 180.02562 * 17 16 15 37 37 H 1.08002 * 119.95730 * 179.72406 * 18 17 16 38 38 H 1.09000 * 109.46951 * 300.00339 * 21 20 19 39 39 H 1.09002 * 109.47371 * 59.99879 * 21 20 19 40 40 H 1.07997 * 120.41991 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.61387 * 180.20911 * 24 23 22 42 42 H 1.08008 * 119.61755 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.41687 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0960 -2.2417 6 6 3.1268 2.8777 -1.6726 7 7 3.5541 3.6177 -0.6729 8 14 3.4386 3.4167 -3.4338 9 1 2.1413 3.5946 -4.1341 10 1 4.1810 4.7028 -3.4337 11 1 4.2411 2.3814 -4.1336 12 6 2.1389 -1.1672 -0.0005 13 8 3.3521 -1.1687 0.0805 14 6 1.4045 -2.4428 -0.0995 15 6 0.3105 -2.6902 0.7336 16 6 -0.3708 -3.8839 0.6365 17 6 0.0235 -4.8410 -0.2843 18 6 1.1027 -4.6095 -1.1136 19 6 1.8008 -3.4140 -1.0288 20 8 2.8618 -3.1853 -1.8426 21 6 3.2069 -4.2207 -2.7651 22 6 4.4009 -3.7917 -3.5782 23 6 4.2370 -3.1132 -4.7762 24 6 5.3556 -2.7319 -5.4926 25 7 6.5665 -3.0147 -5.0537 26 6 6.7600 -3.6624 -3.9215 27 6 5.6893 -4.0713 -3.1491 28 1 -0.3634 0.0540 1.0262 29 1 -0.3634 0.8618 -0.5600 30 1 -0.3634 -0.9157 -0.4664 31 1 1.6084 2.0284 0.5140 32 1 3.1499 1.1384 0.5138 33 1 4.0315 4.4433 -0.8502 34 1 -0.0002 -1.9472 1.4531 35 1 -1.2166 -4.0739 1.2807 36 1 -0.5166 -5.7737 -0.3539 37 1 1.4068 -5.3624 -1.8258 38 1 3.4496 -5.1305 -2.2159 39 1 2.3640 -4.4114 -3.4293 40 1 3.2478 -2.8824 -5.1430 41 1 5.2365 -2.2001 -6.4251 42 1 7.7668 -3.8765 -3.5943 43 1 5.8542 -4.6010 -2.2225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523323517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:44 Heat of formation + Delta-G solvation = -22.104232 kcal Electronic energy + Delta-G solvation = -27226.019380 eV Core-core repulsion = 23429.112054 eV Total energy + Delta-G solvation = -3796.907326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72742 -41.10253 -39.98617 -38.32836 -36.60223 -34.79438 -34.45719 -32.40264 -32.25039 -30.94197 -29.68595 -28.23249 -27.46991 -25.63504 -24.53535 -24.09590 -23.40422 -22.53357 -20.69302 -19.05065 -18.71561 -18.19281 -17.91594 -17.71605 -17.27506 -16.81643 -16.56877 -16.45842 -16.13921 -15.87181 -15.68652 -15.31671 -14.86354 -14.66172 -14.46845 -14.42625 -14.16306 -13.80992 -13.57769 -13.49517 -13.31006 -13.08706 -12.87089 -12.70995 -12.60642 -12.56182 -12.24225 -12.14327 -11.93574 -11.78054 -10.87783 -10.69862 -10.68432 -10.57195 -10.18156 -9.92300 -9.48172 -9.19896 -8.26426 -6.41275 0.00028 0.07043 0.10345 0.44128 1.30238 1.35659 1.42614 1.86267 2.18831 2.30029 2.42523 2.82851 2.88061 3.02526 3.41903 3.52110 3.64273 3.66591 3.90120 3.95556 4.07739 4.09383 4.20988 4.26563 4.32455 4.41009 4.46325 4.56389 4.58758 4.64667 4.77538 4.84126 4.86611 4.91694 5.00089 5.17218 5.20583 5.26138 5.38756 5.50381 5.52196 5.65060 5.80577 5.82783 6.02274 6.38556 6.65075 6.73619 6.89712 7.23461 7.43959 8.80615 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007041 B = 0.005945 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3975.891952 B = 4708.773394 C = 7950.901613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.605 5.605 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.047 0.953 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.964 3.036 9 H -0.256 1.256 10 H -0.273 1.273 11 H -0.283 1.283 12 C 0.546 3.454 13 O -0.592 6.592 14 C -0.186 4.186 15 C -0.055 4.055 16 C -0.153 4.153 17 C -0.050 4.050 18 C -0.212 4.212 19 C 0.150 3.850 20 O -0.328 6.328 21 C 0.096 3.904 22 C -0.065 4.065 23 C -0.157 4.157 24 C 0.082 3.918 25 N -0.507 5.507 26 C 0.084 3.916 27 C -0.154 4.154 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.028 0.972 32 H -0.004 1.004 33 H 0.268 0.732 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.153 0.847 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 -22.348 -3.629 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.336 5.336 3 C 0.140 3.860 4 C -0.582 4.582 5 H 0.065 0.935 6 C -0.189 4.189 7 N -0.566 5.566 8 Si 0.788 3.212 9 H -0.180 1.180 10 H -0.198 1.198 11 H -0.208 1.208 12 C 0.335 3.665 13 O -0.473 6.473 14 C -0.190 4.190 15 C -0.073 4.073 16 C -0.171 4.171 17 C -0.068 4.068 18 C -0.230 4.230 19 C 0.103 3.897 20 O -0.242 6.242 21 C 0.022 3.978 22 C -0.074 4.074 23 C -0.177 4.177 24 C -0.074 4.074 25 N -0.217 5.217 26 C -0.072 4.072 27 C -0.174 4.174 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.014 0.986 33 H 0.077 0.923 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.170 0.830 41 H 0.195 0.805 42 H 0.198 0.802 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.158 -21.710 -4.046 23.542 hybrid contribution 0.100 0.714 -0.211 0.751 sum -8.058 -20.996 -4.257 22.889 Atomic orbital electron populations 1.22068 0.78049 1.03652 1.02629 1.48074 1.08356 1.06088 1.71062 1.18753 0.91059 0.80098 0.96087 1.21611 1.37158 1.06547 0.92840 0.93453 1.25834 0.94755 0.96311 1.02018 1.70038 1.38726 1.14811 1.33016 0.85528 0.79025 0.77411 0.79246 1.18015 1.19811 1.20844 1.18805 0.86772 0.84732 0.76148 1.90698 1.16422 1.88066 1.52161 1.19372 1.01821 0.94319 1.03514 1.21420 0.91061 0.98878 0.95985 1.21403 1.01960 0.92647 1.01100 1.21589 0.93627 0.99883 0.91711 1.21505 0.99954 0.95923 1.05633 1.19243 0.86925 0.93812 0.89719 1.86292 1.45646 1.44197 1.48045 1.21857 0.95430 0.89911 0.90646 1.20192 0.95019 0.97421 0.94739 1.22366 1.01820 0.97807 0.95673 1.23184 0.87316 0.96475 1.00437 1.67676 1.26286 1.12205 1.15484 1.23227 1.00680 0.93371 0.89927 1.22373 0.92672 1.01069 1.01271 0.90454 0.91664 0.89427 0.95363 0.98616 0.92283 0.83947 0.81594 0.81136 0.82209 0.88204 0.88154 0.82959 0.80524 0.80151 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.60 9.09 127.77 1.16 3.76 16 2 N -0.61 -28.54 2.86 -854.91 -2.44 -30.98 16 3 C 0.26 15.14 5.21 85.63 0.45 15.59 16 4 C -0.54 -33.35 9.39 25.60 0.24 -33.11 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.60 5.46 84.66 0.46 1.07 16 7 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 8 Si 0.96 47.07 29.54 68.60 2.03 49.10 16 9 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 12 C 0.55 26.34 6.95 86.69 0.60 26.94 16 13 O -0.59 -35.09 16.09 4.82 0.08 -35.01 16 14 C -0.19 -6.58 4.90 -20.01 -0.10 -6.68 16 15 C -0.05 -1.36 7.61 22.52 0.17 -1.18 16 16 C -0.15 -2.47 10.02 22.24 0.22 -2.25 16 17 C -0.05 -0.72 10.03 22.30 0.22 -0.50 16 18 C -0.21 -4.15 9.03 22.34 0.20 -3.95 16 19 C 0.15 4.69 6.67 22.84 0.15 4.84 16 20 O -0.33 -11.75 9.17 -80.92 -0.74 -12.49 16 21 C 0.10 2.24 4.91 71.23 0.35 2.59 16 22 C -0.07 -1.77 5.55 -19.67 -0.11 -1.87 16 23 C -0.16 -4.16 9.82 22.36 0.22 -3.94 16 24 C 0.08 2.24 11.18 84.68 0.95 3.19 16 25 N -0.51 -15.21 10.36 -195.83 -2.03 -17.24 16 26 C 0.08 2.23 11.18 84.68 0.95 3.18 16 27 C -0.15 -4.00 9.82 22.36 0.22 -3.78 16 28 H 0.08 2.06 7.56 -2.39 -0.02 2.04 16 29 H 0.06 2.24 8.10 -2.38 -0.02 2.22 16 30 H 0.09 2.47 5.68 -2.39 -0.01 2.46 16 31 H 0.03 1.63 8.07 -2.38 -0.02 1.61 16 32 H 0.00 -0.29 7.36 -2.39 -0.02 -0.30 16 33 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 34 H 0.14 3.16 6.58 -2.91 -0.02 3.14 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.16 2.07 6.30 -2.91 -0.02 2.05 16 38 H 0.10 1.75 7.62 -2.39 -0.02 1.73 16 39 H 0.10 1.74 7.62 -2.39 -0.02 1.72 16 40 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.18 3.82 8.06 -2.91 -0.02 3.80 16 42 H 0.18 3.63 8.06 -2.91 -0.02 3.60 16 43 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -90.53 368.80 4.56 -85.97 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.03 Total: 14.72 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 6.36 Total: 3.90 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.19 Total: -106.18 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.66 Total: -47.50 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -90.53 4.56 -85.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523323517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.864 kcal (2) G-P(sol) polarization free energy of solvation -90.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds