Wall clock time and date at job start Tue Mar 31 2020 14:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35981 * 116.99969 * 2 1 4 4 C 1.38804 * 120.49578 * 0.23248 * 3 2 1 5 5 C 1.38775 * 118.44797 * 180.22033 * 4 3 2 6 6 C 1.38090 * 119.35113 * 359.52875 * 5 4 3 7 7 N 1.31955 * 120.95565 * 0.25178 * 6 5 4 8 8 C 1.32275 * 121.69199 * 0.02562 * 7 6 5 9 9 N 1.39578 * 119.72540 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00318 * 0.02562 * 9 8 7 11 11 O 1.21283 * 119.99953 * 359.97438 * 10 9 8 12 12 C 1.50704 * 120.00275 * 180.02562 * 10 9 8 13 13 C 1.53004 * 109.47236 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46824 * 305.36905 * 13 12 10 15 15 C 1.50699 * 109.46972 * 65.36441 * 13 12 10 16 16 H 1.08003 * 119.99801 * 34.62763 * 15 13 12 17 17 C 1.37876 * 120.00158 * 214.61709 * 15 13 12 18 18 N 1.31507 * 120.00448 * 186.44976 * 17 15 13 19 19 Si 1.86799 * 119.99639 * 6.45241 * 17 15 13 20 20 H 1.48504 * 109.47206 * 85.00821 * 19 17 15 21 21 H 1.48499 * 109.47030 * 205.00522 * 19 17 15 22 22 H 1.48501 * 109.47612 * 325.00727 * 19 17 15 23 23 C 1.50693 * 109.46975 * 185.36727 * 13 12 10 24 24 C 1.38232 * 120.00051 * 296.35650 * 23 13 12 25 25 C 1.38238 * 120.00167 * 179.78798 * 24 23 13 26 26 C 1.38235 * 119.99728 * 0.44505 * 25 24 23 27 27 C 1.38236 * 120.00122 * 359.80847 * 26 25 24 28 28 C 1.38239 * 120.00129 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47551 * 300.00155 * 1 2 3 30 30 H 1.09005 * 109.47662 * 60.00151 * 1 2 3 31 31 H 1.09008 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.77417 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.32134 * 179.80228 * 5 4 3 34 34 H 1.07999 * 119.52065 * 180.23396 * 6 5 4 35 35 H 0.97002 * 120.00098 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.46705 * 299.99901 * 12 10 9 37 37 H 1.08996 * 109.47365 * 59.99772 * 12 10 9 38 38 H 0.97002 * 120.00712 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.99931 * 0.02562 * 24 23 13 40 40 H 1.07999 * 120.00246 * 180.27269 * 25 24 23 41 41 H 1.08000 * 119.99984 * 179.83700 * 26 25 24 42 42 H 1.07997 * 120.00078 * 180.02562 * 27 26 25 43 43 H 1.07994 * 120.00121 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.3004 2.3822 0.0049 5 6 1.9742 3.5954 0.0000 6 6 3.3550 3.6028 0.0004 7 7 4.0398 2.4748 0.0004 8 6 3.4383 1.2967 -0.0005 9 7 4.2031 0.1291 -0.0010 10 6 5.5487 0.2049 0.0000 11 8 6.0951 1.2877 0.0008 12 6 6.3745 -1.0557 -0.0011 13 6 7.8606 -0.6920 -0.0004 14 1 8.0723 -0.0269 -0.8376 15 6 8.2074 0.0014 1.2920 16 1 7.7161 -0.2886 2.2090 17 6 9.1519 1.0057 1.3036 18 7 9.5472 1.5235 2.4460 19 14 9.8701 1.6310 -0.3034 20 1 8.9773 2.6722 -0.8727 21 1 11.2126 2.2138 -0.0520 22 1 9.9914 0.5043 -1.2631 23 6 8.6849 -1.9464 -0.1344 24 6 8.6417 -2.9107 0.8551 25 6 9.3944 -4.0634 0.7301 26 6 10.1974 -4.2476 -0.3800 27 6 10.2446 -3.2808 -1.3670 28 6 9.4884 -2.1301 -1.2441 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2208 2.3496 0.0091 33 1 1.4239 4.5247 0.0003 34 1 3.8822 4.5454 0.0004 35 1 3.7662 -0.7369 -0.0020 36 1 6.1431 -1.6423 0.8879 37 1 6.1443 -1.6401 -0.8920 38 1 10.2119 2.2299 2.4543 39 1 8.0170 -2.7653 1.7239 40 1 9.3573 -4.8189 1.5010 41 1 10.7875 -5.1470 -0.4764 42 1 10.8716 -3.4249 -2.2344 43 1 9.5250 -1.3751 -2.0154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526991497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:14 Heat of formation + Delta-G solvation = 7.452460 kcal Electronic energy + Delta-G solvation = -27081.213790 eV Core-core repulsion = 23285.588139 eV Total energy + Delta-G solvation = -3795.625652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85786 -39.11312 -38.40934 -37.86843 -34.65001 -33.86215 -31.78547 -31.56691 -30.19306 -30.01774 -28.74584 -27.57876 -26.00013 -23.52386 -22.94322 -22.37637 -21.80917 -20.21790 -19.22340 -18.36739 -17.55368 -16.93483 -16.83461 -16.16898 -16.06388 -15.60803 -14.92735 -14.72929 -14.55817 -14.30073 -14.14028 -13.85897 -13.56532 -13.42322 -13.09581 -12.71220 -12.49709 -12.42593 -12.31418 -11.91649 -11.84699 -11.63451 -11.57572 -11.07538 -10.72200 -10.51881 -10.39625 -10.30820 -9.88837 -9.69205 -9.54835 -9.33922 -9.12180 -8.57741 -8.34404 -8.17102 -7.78752 -7.68972 -5.93650 -3.90646 1.23820 1.32907 2.13133 2.17799 3.01327 3.25958 3.42409 3.48437 3.52528 3.60081 4.07031 4.54294 4.56443 4.63324 4.66973 4.85503 4.89965 4.95043 5.13756 5.21545 5.37237 5.40871 5.54967 5.58937 5.66719 5.71999 5.87477 5.95178 6.01239 6.07213 6.11392 6.27313 6.35382 6.40924 6.61283 6.64863 6.72448 6.86006 7.03500 7.17543 7.23338 7.29877 7.60665 7.64948 7.75831 7.85990 8.34055 8.57118 8.98442 9.05767 9.71558 11.19226 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.003807 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.118550 B = 7352.471940 C = 8736.926332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.028 3.972 4 C -0.139 4.139 5 C -0.181 4.181 6 C 0.100 3.900 7 N -0.439 5.439 8 C 0.362 3.638 9 N -0.666 5.666 10 C 0.498 3.502 11 O -0.431 6.431 12 C -0.115 4.115 13 C 0.056 3.944 14 H 0.050 0.950 15 C -0.490 4.490 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.898 5.898 19 Si 0.872 3.128 20 H -0.270 1.270 21 H -0.297 1.297 22 H -0.261 1.261 23 C -0.037 4.037 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.150 4.150 27 C -0.126 4.126 28 C -0.136 4.136 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.262 0.738 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.181 -4.949 -6.870 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C -0.022 4.022 4 C -0.166 4.166 5 C -0.203 4.203 6 C -0.057 4.057 7 N -0.155 5.155 8 C 0.128 3.872 9 N -0.315 5.315 10 C 0.284 3.716 11 O -0.295 6.295 12 C -0.155 4.155 13 C 0.037 3.963 14 H 0.068 0.932 15 C -0.527 4.527 16 H 0.089 0.911 17 C -0.115 4.115 18 N -0.535 5.535 19 Si 0.700 3.300 20 H -0.196 1.196 21 H -0.224 1.224 22 H -0.186 1.186 23 C -0.038 4.038 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.168 4.168 27 C -0.145 4.145 28 C -0.154 4.154 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.519 -4.230 -6.771 17.452 hybrid contribution -0.940 0.200 -0.604 1.136 sum -16.459 -4.030 -7.376 18.481 Atomic orbital electron populations 1.23025 0.78375 1.03956 1.01157 1.86011 1.21357 1.25971 1.89601 1.19466 0.91362 0.85717 1.05677 1.21387 1.00140 0.91634 1.03440 1.21825 0.95646 0.97977 1.04853 1.22644 0.91004 0.96133 0.95917 1.67908 1.37915 0.96247 1.13385 1.18115 0.84289 0.88015 0.96800 1.44046 1.07392 1.06494 1.73550 1.21159 0.80447 0.93064 0.76937 1.90842 1.69489 1.29159 1.40016 1.21706 0.97591 0.93986 1.02229 1.18127 0.87664 0.90608 0.99935 0.93187 1.20567 1.22628 1.17308 0.92172 0.91101 1.24867 0.95385 0.95539 0.95698 1.69891 1.31204 1.27029 1.25361 0.86947 0.77665 0.80092 0.85291 1.19588 1.22360 1.18633 1.20711 0.96305 0.95051 0.91731 1.20962 0.99502 0.92976 0.98501 1.21047 0.97910 0.97979 0.97637 1.20857 1.01103 0.99241 0.95579 1.20962 0.99884 0.94785 0.98825 1.21157 0.98538 0.97209 0.98503 0.92757 0.92825 0.88146 0.84508 0.84866 0.82384 0.74923 0.89472 0.91052 0.92862 0.86259 0.87212 0.87463 0.87409 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.83 101.05 0.99 1.20 16 2 O -0.32 -3.59 9.75 -19.68 -0.19 -3.78 16 3 C 0.03 0.38 6.72 -38.92 -0.26 0.12 16 4 C -0.14 -1.56 9.14 -39.17 -0.36 -1.91 16 5 C -0.18 -2.08 10.10 -39.44 -0.40 -2.48 16 6 C 0.10 1.49 11.17 -17.55 -0.20 1.30 16 7 N -0.44 -8.45 7.88 -12.22 -0.10 -8.54 16 8 C 0.36 6.23 7.45 -154.44 -1.15 5.08 16 9 N -0.67 -11.22 5.39 -11.29 -0.06 -11.28 16 10 C 0.50 10.27 7.54 -10.99 -0.08 10.19 16 11 O -0.43 -11.00 13.25 5.55 0.07 -10.92 16 12 C -0.11 -2.16 4.94 -27.88 -0.14 -2.30 16 13 C 0.06 1.29 1.28 -92.93 -0.12 1.17 16 14 H 0.05 1.23 4.78 -51.93 -0.25 0.98 16 15 C -0.49 -13.60 6.94 -34.44 -0.24 -13.84 16 16 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 17 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 18 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 19 Si 0.87 23.14 27.04 -169.99 -4.60 18.55 16 20 H -0.27 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 22 H -0.26 -6.41 5.15 56.52 0.29 -6.12 16 23 C -0.04 -0.79 4.77 -104.63 -0.50 -1.29 16 24 C -0.10 -1.99 8.87 -39.58 -0.35 -2.34 16 25 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 26 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 27 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 28 C -0.14 -2.70 9.13 -39.58 -0.36 -3.07 16 29 H 0.05 0.32 7.69 -51.93 -0.40 -0.08 16 30 H 0.05 0.31 7.71 -51.93 -0.40 -0.09 16 31 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.14 1.06 6.44 -52.48 -0.34 0.72 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 35 H 0.41 5.50 8.05 -40.82 -0.33 5.17 16 36 H 0.09 1.52 7.80 -51.93 -0.41 1.11 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 39 H 0.12 2.30 7.77 -52.49 -0.41 1.90 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 2.20 6.96 -52.49 -0.37 1.83 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -36.68 360.25 -8.64 -45.32 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.52 Total: 6.58 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -4.45 Total: -13.70 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.62 Total: -47.47 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.12 Total: -14.71 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.60 Total: 18.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.68 -8.64 -45.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526991497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.775 kcal (2) G-P(sol) polarization free energy of solvation -36.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds