Wall clock time and date at job start Tue Mar 31 2020 14:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35981 * 116.99969 * 2 1 4 4 C 1.38804 * 120.49578 * 0.23248 * 3 2 1 5 5 C 1.38775 * 118.44797 * 180.22033 * 4 3 2 6 6 C 1.38090 * 119.35113 * 359.52875 * 5 4 3 7 7 N 1.31955 * 120.95565 * 0.25178 * 6 5 4 8 8 C 1.32275 * 121.69199 * 0.02562 * 7 6 5 9 9 N 1.39578 * 119.72540 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00318 * 0.02562 * 9 8 7 11 11 O 1.21283 * 119.99953 * 359.97438 * 10 9 8 12 12 C 1.50704 * 120.00275 * 180.02562 * 10 9 8 13 13 C 1.53004 * 109.47236 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46824 * 305.36905 * 13 12 10 15 15 C 1.50699 * 109.46972 * 65.36441 * 13 12 10 16 16 H 1.08003 * 119.99801 * 34.62763 * 15 13 12 17 17 C 1.37876 * 120.00158 * 214.61709 * 15 13 12 18 18 N 1.31507 * 120.00448 * 186.44976 * 17 15 13 19 19 Si 1.86799 * 119.99639 * 6.45241 * 17 15 13 20 20 H 1.48504 * 109.47206 * 85.00821 * 19 17 15 21 21 H 1.48499 * 109.47030 * 205.00522 * 19 17 15 22 22 H 1.48501 * 109.47612 * 325.00727 * 19 17 15 23 23 C 1.50693 * 109.46975 * 185.36727 * 13 12 10 24 24 C 1.38232 * 120.00051 * 296.35650 * 23 13 12 25 25 C 1.38238 * 120.00167 * 179.78798 * 24 23 13 26 26 C 1.38235 * 119.99728 * 0.44505 * 25 24 23 27 27 C 1.38236 * 120.00122 * 359.80847 * 26 25 24 28 28 C 1.38239 * 120.00129 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47551 * 300.00155 * 1 2 3 30 30 H 1.09005 * 109.47662 * 60.00151 * 1 2 3 31 31 H 1.09008 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.77417 * 0.02562 * 4 3 2 33 33 H 1.07998 * 120.32134 * 179.80228 * 5 4 3 34 34 H 1.07999 * 119.52065 * 180.23396 * 6 5 4 35 35 H 0.97002 * 120.00098 * 180.02562 * 9 8 7 36 36 H 1.08996 * 109.46705 * 299.99901 * 12 10 9 37 37 H 1.08996 * 109.47365 * 59.99772 * 12 10 9 38 38 H 0.97002 * 120.00712 * 179.97438 * 18 17 15 39 39 H 1.08000 * 119.99931 * 0.02562 * 24 23 13 40 40 H 1.07999 * 120.00246 * 180.27269 * 25 24 23 41 41 H 1.08000 * 119.99984 * 179.83700 * 26 25 24 42 42 H 1.07997 * 120.00078 * 180.02562 * 27 26 25 43 43 H 1.07994 * 120.00121 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.3004 2.3822 0.0049 5 6 1.9742 3.5954 0.0000 6 6 3.3550 3.6028 0.0004 7 7 4.0398 2.4748 0.0004 8 6 3.4383 1.2967 -0.0005 9 7 4.2031 0.1291 -0.0010 10 6 5.5487 0.2049 0.0000 11 8 6.0951 1.2877 0.0008 12 6 6.3745 -1.0557 -0.0011 13 6 7.8606 -0.6920 -0.0004 14 1 8.0723 -0.0269 -0.8376 15 6 8.2074 0.0014 1.2920 16 1 7.7161 -0.2886 2.2090 17 6 9.1519 1.0057 1.3036 18 7 9.5472 1.5235 2.4460 19 14 9.8701 1.6310 -0.3034 20 1 8.9773 2.6722 -0.8727 21 1 11.2126 2.2138 -0.0520 22 1 9.9914 0.5043 -1.2631 23 6 8.6849 -1.9464 -0.1344 24 6 8.6417 -2.9107 0.8551 25 6 9.3944 -4.0634 0.7301 26 6 10.1974 -4.2476 -0.3800 27 6 10.2446 -3.2808 -1.3670 28 6 9.4884 -2.1301 -1.2441 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2208 2.3496 0.0091 33 1 1.4239 4.5247 0.0003 34 1 3.8822 4.5454 0.0004 35 1 3.7662 -0.7369 -0.0020 36 1 6.1431 -1.6423 0.8879 37 1 6.1443 -1.6401 -0.8920 38 1 10.2119 2.2299 2.4543 39 1 8.0170 -2.7653 1.7239 40 1 9.3573 -4.8189 1.5010 41 1 10.7875 -5.1470 -0.4764 42 1 10.8716 -3.4249 -2.2344 43 1 9.5250 -1.3751 -2.0154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526991497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:13 Heat of formation + Delta-G solvation = -17.242579 kcal Electronic energy + Delta-G solvation = -27082.284647 eV Core-core repulsion = 23285.588139 eV Total energy + Delta-G solvation = -3796.696509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97742 -40.54944 -39.75918 -38.93985 -36.15328 -35.52914 -33.73735 -32.77260 -31.60063 -31.22107 -30.11041 -28.28185 -27.85867 -24.96984 -24.04258 -23.76723 -23.24142 -21.64991 -20.80237 -19.43814 -19.02349 -18.57806 -18.20629 -17.48466 -16.95603 -16.89608 -16.46855 -16.12475 -15.93746 -15.69324 -15.39201 -15.21689 -14.91745 -14.64338 -14.54878 -14.35212 -14.13532 -13.88019 -13.59823 -13.31312 -13.28313 -12.89150 -12.72046 -12.35651 -12.30756 -12.09944 -11.91496 -11.81513 -11.69131 -11.47702 -11.14233 -11.02192 -10.59116 -10.41049 -9.96895 -9.60538 -9.29329 -8.82206 -8.22351 -6.18141 0.14614 0.32549 0.69802 0.74422 1.29741 1.39299 1.41967 1.92768 2.02893 2.19368 2.41763 2.91793 3.08765 3.25107 3.51229 3.81296 3.84378 4.09367 4.12435 4.25390 4.29630 4.34027 4.42931 4.44337 4.45384 4.48029 4.50918 4.63652 4.78745 4.84647 4.87088 4.93123 5.06980 5.11616 5.19699 5.37758 5.38602 5.41688 5.55851 5.68490 5.78196 5.83520 6.03818 6.28047 6.32344 6.36662 6.41282 6.80395 7.14997 7.45745 7.55555 8.94807 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013748 B = 0.003807 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.118550 B = 7352.471940 C = 8736.926332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.042 3.958 4 C -0.134 4.134 5 C -0.154 4.154 6 C 0.066 3.934 7 N -0.496 5.496 8 C 0.314 3.686 9 N -0.655 5.655 10 C 0.497 3.503 11 O -0.495 6.495 12 C -0.109 4.109 13 C 0.058 3.942 14 H 0.032 0.968 15 C -0.465 4.465 16 H 0.034 0.966 17 C 0.026 3.974 18 N -0.952 5.952 19 Si 0.922 3.078 20 H -0.290 1.290 21 H -0.297 1.297 22 H -0.230 1.230 23 C -0.061 4.061 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.153 4.153 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.429 0.571 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.258 0.742 39 H 0.110 0.890 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.379 -7.458 -8.646 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C -0.009 4.009 4 C -0.161 4.161 5 C -0.175 4.175 6 C -0.090 4.090 7 N -0.212 5.212 8 C 0.082 3.918 9 N -0.305 5.305 10 C 0.283 3.717 11 O -0.364 6.364 12 C -0.149 4.149 13 C 0.038 3.962 14 H 0.050 0.950 15 C -0.503 4.503 16 H 0.052 0.948 17 C -0.170 4.170 18 N -0.594 5.594 19 Si 0.749 3.251 20 H -0.217 1.217 21 H -0.224 1.224 22 H -0.154 1.154 23 C -0.062 4.062 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.157 4.157 27 C -0.142 4.142 28 C -0.172 4.172 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.199 0.801 33 H 0.193 0.807 34 H 0.180 0.820 35 H 0.268 0.732 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.789 -6.794 -8.575 20.884 hybrid contribution -0.527 0.857 -0.045 1.007 sum -18.316 -5.937 -8.621 21.096 Atomic orbital electron populations 1.23425 0.75657 1.06006 1.02555 1.86008 1.24037 1.24946 1.89114 1.19423 0.90166 0.87426 1.03871 1.21913 1.02144 0.90335 1.01669 1.22240 0.94160 1.00035 1.01021 1.22939 0.92983 0.95345 0.97773 1.67689 1.40790 0.98009 1.14727 1.18305 0.85971 0.87422 1.00115 1.43678 1.06244 1.07621 1.72999 1.21429 0.81751 0.92618 0.75863 1.90814 1.70993 1.31101 1.43450 1.21628 0.94813 0.93870 1.04556 1.17996 0.90687 0.91214 0.96283 0.94996 1.20773 1.20207 1.16341 0.92939 0.94820 1.25568 0.96798 0.96530 0.98092 1.70028 1.33267 1.28750 1.27324 0.86138 0.76249 0.79875 0.82812 1.21687 1.22403 1.15357 1.20430 0.97260 0.94914 0.93574 1.21010 1.00629 0.94063 0.97977 1.21397 0.96771 0.97376 0.98711 1.21338 1.00043 1.00077 0.94274 1.21330 0.99116 0.93639 1.00097 1.21257 0.99132 0.98572 0.98199 0.91431 0.91162 0.86019 0.80078 0.80671 0.81979 0.73188 0.88259 0.87292 0.93333 0.87221 0.84244 0.83524 0.84230 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 113.37 1.11 1.29 16 2 O -0.33 -6.71 9.75 -93.34 -0.91 -7.61 16 3 C 0.04 1.07 6.72 22.70 0.15 1.23 16 4 C -0.13 -2.57 9.14 22.53 0.21 -2.36 16 5 C -0.15 -3.17 10.10 22.36 0.23 -2.94 16 6 C 0.07 2.02 11.17 84.64 0.95 2.97 16 7 N -0.50 -20.19 7.88 -192.59 -1.52 -21.71 16 8 C 0.31 11.13 7.45 132.98 0.99 12.12 16 9 N -0.66 -22.86 5.39 -308.03 -1.66 -24.52 16 10 C 0.50 21.52 7.54 87.66 0.66 22.18 16 11 O -0.49 -27.04 13.25 -3.04 -0.04 -27.08 16 12 C -0.11 -4.19 4.94 29.85 0.15 -4.04 16 13 C 0.06 2.73 1.28 -12.29 -0.02 2.72 16 14 H 0.03 1.62 4.78 -2.39 -0.01 1.61 16 15 C -0.46 -27.28 6.94 25.60 0.18 -27.10 16 16 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 17 C 0.03 1.66 5.47 84.66 0.46 2.12 16 18 N -0.95 -64.09 13.96 21.45 0.30 -63.79 16 19 Si 0.92 50.20 27.04 68.60 1.85 52.06 16 20 H -0.29 -16.57 7.11 99.48 0.71 -15.86 16 21 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 22 H -0.23 -11.20 5.15 99.48 0.51 -10.69 16 23 C -0.06 -2.57 4.77 -19.87 -0.09 -2.67 16 24 C -0.12 -4.56 8.87 22.27 0.20 -4.37 16 25 C -0.12 -3.91 10.05 22.27 0.22 -3.68 16 26 C -0.14 -3.97 10.05 22.27 0.22 -3.75 16 27 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 28 C -0.15 -5.86 9.13 22.27 0.20 -5.66 16 29 H 0.07 0.52 7.69 -2.39 -0.02 0.50 16 30 H 0.07 0.49 7.71 -2.38 -0.02 0.47 16 31 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.18 1.81 6.44 -2.91 -0.02 1.79 16 33 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.43 11.49 8.05 -92.71 -0.75 10.74 16 36 H 0.10 3.55 7.80 -2.39 -0.02 3.53 16 37 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 38 H 0.26 16.58 8.31 -92.71 -0.77 15.81 16 39 H 0.11 4.32 7.77 -2.91 -0.02 4.29 16 40 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 41 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.11 4.11 6.96 -2.91 -0.02 4.09 16 Total: -1.00 -88.77 360.25 4.17 -84.60 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.10 Total: 23.63 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 6.05 Total: -15.57 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -2.88 Total: -110.02 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.95 Total: -34.70 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 1.85 Total: 52.06 kcal Total: -88.77 4.17 -84.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526991497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.354 kcal (2) G-P(sol) polarization free energy of solvation -88.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds