Wall clock time and date at job start Tue Mar 31 2020 14:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 116.99733 * 2 1 4 4 C 1.38752 * 120.05698 * 359.72620 * 3 2 1 5 5 C 1.38129 * 119.93998 * 179.69728 * 4 3 2 6 6 C 1.38292 * 120.05779 * 0.60231 * 5 4 3 7 7 C 1.38244 * 120.10774 * 359.67307 * 6 5 4 8 8 C 1.50699 * 119.96853 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47211 * 269.98068 * 8 7 6 10 10 C 1.50700 * 109.46833 * 180.02562 * 9 8 7 11 11 O 1.21271 * 120.00415 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99794 * 180.02562 * 10 9 8 13 13 C 1.39472 * 120.00260 * 175.12167 * 12 10 9 14 14 C 1.38593 * 119.58182 * 185.20652 * 13 12 10 15 15 C 1.40814 * 118.79793 * 180.02562 * 14 13 12 16 16 C 1.41539 * 121.00071 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00597 * 149.42617 * 16 15 14 18 18 C 1.40033 * 119.99645 * 329.42298 * 16 15 14 19 19 N 1.30746 * 119.99706 * 167.74236 * 18 16 15 20 20 Si 1.86799 * 120.00379 * 347.74723 * 18 16 15 21 21 H 1.48503 * 109.47109 * 92.42154 * 20 18 16 22 22 H 1.48500 * 109.47414 * 212.42358 * 20 18 16 23 23 H 1.48497 * 109.46752 * 332.42381 * 20 18 16 24 24 C 1.41178 * 118.00391 * 359.97438 * 15 14 13 25 25 C 1.37588 * 119.01441 * 0.02562 * 24 15 14 26 26 N 1.32082 * 121.10950 * 359.71631 * 25 24 15 27 27 C 1.38161 * 120.05807 * 0.02710 * 7 6 5 28 28 H 1.09002 * 109.46671 * 300.00152 * 1 2 3 29 29 H 1.09004 * 109.47109 * 59.99902 * 1 2 3 30 30 H 1.08996 * 109.46682 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.03009 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.97105 * 180.29999 * 5 4 3 33 33 H 1.07997 * 119.94464 * 179.70261 * 6 5 4 34 34 H 1.09003 * 109.47054 * 29.98554 * 8 7 6 35 35 H 1.09000 * 109.47389 * 149.98127 * 8 7 6 36 36 H 1.08999 * 109.47085 * 300.00001 * 9 8 7 37 37 H 1.09001 * 109.47157 * 60.00493 * 9 8 7 38 38 H 0.96998 * 120.00485 * 355.11973 * 12 10 9 39 39 H 1.07998 * 120.60563 * 0.02562 * 14 13 12 40 40 H 0.97002 * 119.99512 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.49105 * 179.97438 * 24 15 14 42 42 H 1.08000 * 119.44134 * 179.97438 * 25 24 15 43 43 H 1.08003 * 120.03087 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9209 3.6048 0.0006 6 6 3.3020 3.6759 0.0001 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 0.0000 9 6 6.0701 2.6253 -1.4424 10 6 7.5750 2.7057 -1.4423 11 8 8.1805 2.7378 -0.3921 12 7 8.2479 2.7421 -2.6095 13 6 9.6314 2.9189 -2.6117 14 6 10.3007 3.0635 -3.8166 15 6 11.6976 3.2406 -3.7996 16 6 12.4279 3.3923 -5.0025 17 1 13.3288 3.9878 -5.0159 18 6 11.9823 2.7702 -6.1752 19 7 12.5071 3.0956 -7.3277 20 14 10.6382 1.4756 -6.0932 21 1 9.3158 2.1219 -6.2903 22 1 10.8588 0.4647 -7.1583 23 1 10.6714 0.8112 -4.7656 24 6 12.3478 3.2622 -2.5466 25 6 11.5981 3.1103 -1.4030 26 7 10.2882 2.9515 -1.4618 27 6 3.4312 1.2849 -0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2129 2.3204 -0.0106 32 1 1.3340 4.5115 0.0010 33 1 3.7923 4.6381 0.0002 34 1 5.8757 3.5066 0.5137 35 1 5.9715 1.7293 0.5141 36 1 5.7552 1.7169 -1.9560 37 1 5.6595 3.4943 -1.9565 38 1 7.7701 2.6452 -3.4481 39 1 9.7609 3.0409 -4.7517 40 1 12.1982 2.6649 -8.1401 41 1 13.4179 3.3951 -2.4868 42 1 12.0885 3.1253 -0.4409 43 1 4.0207 0.3799 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531924181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:46 Heat of formation + Delta-G solvation = -17.259089 kcal Electronic energy + Delta-G solvation = -25703.428307 eV Core-core repulsion = 21906.731082 eV Total energy + Delta-G solvation = -3796.697225 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46219 -39.82429 -38.29811 -37.74803 -34.49060 -33.79963 -33.77624 -31.33570 -30.94209 -29.96282 -28.65621 -27.60791 -26.03439 -24.83531 -22.79046 -22.40083 -21.72646 -20.79847 -19.71066 -18.07508 -17.73233 -17.10362 -16.59571 -16.26415 -16.05897 -15.98407 -15.50289 -15.37504 -14.66036 -14.42352 -14.11716 -13.98920 -13.88189 -13.41293 -13.29730 -13.12850 -12.95097 -12.89767 -12.39744 -12.28351 -12.13408 -11.73107 -11.61674 -11.29782 -11.15741 -10.99658 -10.95741 -10.85277 -10.68397 -10.05737 -9.86142 -9.60099 -9.36129 -9.04837 -8.46114 -8.24378 -7.88912 -7.27295 -7.05529 -4.75195 1.04554 1.19953 2.26700 2.60807 2.94146 2.97375 3.07362 3.21486 3.31138 3.37411 3.57749 3.86972 4.48110 4.50781 4.56804 4.73480 4.76106 4.77668 4.92040 4.99251 5.05719 5.08847 5.19564 5.23940 5.36720 5.38714 5.50795 5.70092 5.78371 5.86377 6.00302 6.09749 6.18074 6.28890 6.35871 6.38835 6.41904 6.51705 6.54352 6.94410 7.10113 7.10341 7.23234 7.56079 7.72379 8.01441 8.19684 8.40263 8.63946 8.67267 9.42572 9.96037 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.002324 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.382528 B =12044.118636 C =12864.472106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.038 4.038 8 C -0.066 4.066 9 C -0.135 4.135 10 C 0.499 3.501 11 O -0.476 6.476 12 N -0.665 5.665 13 C 0.368 3.632 14 C -0.319 4.319 15 C 0.127 3.873 16 C -0.438 4.438 17 H 0.095 0.905 18 C 0.084 3.916 19 N -0.804 5.804 20 Si 0.918 3.082 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.245 1.245 24 C -0.270 4.270 25 C 0.127 3.873 26 N -0.553 5.553 27 C -0.148 4.148 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.408 0.592 39 H 0.108 0.892 40 H 0.287 0.713 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.137 -2.842 8.926 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.171 4.171 7 C -0.038 4.038 8 C -0.103 4.103 9 C -0.175 4.175 10 C 0.284 3.716 11 O -0.346 6.346 12 N -0.311 5.311 13 C 0.140 3.860 14 C -0.345 4.345 15 C 0.119 3.881 16 C -0.468 4.468 17 H 0.113 0.887 18 C -0.136 4.136 19 N -0.428 5.428 20 Si 0.745 3.255 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.168 1.168 24 C -0.294 4.294 25 C -0.025 4.025 26 N -0.273 5.273 27 C -0.167 4.167 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.242 0.758 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.148 0.852 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.077 -3.095 10.258 25.443 hybrid contribution -0.647 -0.294 -1.622 1.771 sum -23.724 -3.389 8.636 25.473 Atomic orbital electron populations 1.23046 0.78465 1.03910 1.01291 1.86083 1.21322 1.27042 1.88759 1.19020 0.92308 0.84111 0.96439 1.21206 0.99879 0.92489 1.09804 1.20928 0.94607 0.96921 0.97268 1.21035 0.93669 0.98273 1.04081 1.19744 0.95775 0.92121 0.96209 1.20361 0.89196 1.05000 0.95782 1.21672 0.92383 1.04602 0.98841 1.20709 0.89502 0.77363 0.84071 1.90789 1.69512 1.44061 1.30239 1.43590 1.06086 1.71919 1.09553 1.18033 0.82838 0.94613 0.90470 1.21252 0.95476 1.22375 0.95386 1.17713 0.90301 0.86515 0.93575 1.19501 1.09797 1.26997 0.90506 0.88668 1.26188 0.96226 0.96885 0.94316 1.69614 1.37970 1.36043 0.99222 0.86227 0.79897 0.80073 0.79304 1.19706 1.21882 1.16805 1.21929 0.99575 1.14675 0.93194 1.21923 0.88760 0.94676 0.97123 1.67329 1.09555 1.24369 1.26046 1.20361 0.91245 0.98443 1.06620 0.92702 0.92677 0.88269 0.85708 0.85807 0.85653 0.89639 0.89761 0.88906 0.88782 0.75763 0.87428 0.90210 0.87153 0.85221 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.15 10.50 -19.43 -0.20 -3.35 16 3 C 0.13 1.31 6.69 -39.21 -0.26 1.04 16 4 C -0.22 -1.89 9.04 -39.43 -0.36 -2.25 16 5 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 6 C -0.15 -1.45 9.70 -39.56 -0.38 -1.83 16 7 C -0.04 -0.40 5.13 -104.65 -0.54 -0.94 16 8 C -0.07 -0.75 4.63 -27.88 -0.13 -0.88 16 9 C -0.13 -1.55 5.68 -27.88 -0.16 -1.71 16 10 C 0.50 8.48 7.79 -10.99 -0.09 8.39 16 11 O -0.48 -10.03 14.24 5.57 0.08 -9.95 16 12 N -0.67 -12.06 5.39 -11.49 -0.06 -12.12 16 13 C 0.37 8.38 7.42 -154.71 -1.15 7.23 16 14 C -0.32 -7.56 6.94 -38.48 -0.27 -7.83 16 15 C 0.13 3.20 5.16 -106.55 -0.55 2.65 16 16 C -0.44 -11.51 9.67 -37.65 -0.36 -11.88 16 17 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16 18 C 0.08 2.13 5.48 -17.34 -0.10 2.03 16 19 N -0.80 -20.71 13.92 55.55 0.77 -19.94 16 20 Si 0.92 20.09 24.43 -169.99 -4.15 15.93 16 21 H -0.27 -5.53 6.67 56.52 0.38 -5.15 16 22 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.24 -5.62 6.65 56.52 0.38 -5.24 16 24 C -0.27 -6.29 9.90 -38.70 -0.38 -6.67 16 25 C 0.13 2.87 11.15 -17.68 -0.20 2.67 16 26 N -0.55 -13.31 7.85 -12.52 -0.10 -13.41 16 27 C -0.15 -1.59 9.64 -39.43 -0.38 -1.97 16 28 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 29 H 0.05 0.26 7.65 -51.93 -0.40 -0.13 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.13 0.82 6.30 -52.49 -0.33 0.49 16 32 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 35 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 5.93 8.70 -40.82 -0.36 5.57 16 39 H 0.11 2.44 4.43 -52.49 -0.23 2.20 16 40 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 41 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 43 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -32.37 362.52 -8.44 -40.81 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.54 Total: 8.43 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -4.70 Total: -11.86 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.61 Total: -45.47 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.12 Total: -13.31 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.15 Total: 15.93 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.37 -8.44 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.555 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds