Wall clock time and date at job start Tue Mar 31 2020 14:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 116.99733 * 2 1 4 4 C 1.38752 * 120.05698 * 359.72620 * 3 2 1 5 5 C 1.38129 * 119.93998 * 179.69728 * 4 3 2 6 6 C 1.38292 * 120.05779 * 0.60231 * 5 4 3 7 7 C 1.38244 * 120.10774 * 359.67307 * 6 5 4 8 8 C 1.50699 * 119.96853 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47211 * 269.98068 * 8 7 6 10 10 C 1.50700 * 109.46833 * 180.02562 * 9 8 7 11 11 O 1.21271 * 120.00415 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99794 * 180.02562 * 10 9 8 13 13 C 1.39472 * 120.00260 * 175.12167 * 12 10 9 14 14 C 1.38593 * 119.58182 * 185.20652 * 13 12 10 15 15 C 1.40814 * 118.79793 * 180.02562 * 14 13 12 16 16 C 1.41539 * 121.00071 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00597 * 149.42617 * 16 15 14 18 18 C 1.40033 * 119.99645 * 329.42298 * 16 15 14 19 19 N 1.30746 * 119.99706 * 167.74236 * 18 16 15 20 20 Si 1.86799 * 120.00379 * 347.74723 * 18 16 15 21 21 H 1.48503 * 109.47109 * 92.42154 * 20 18 16 22 22 H 1.48500 * 109.47414 * 212.42358 * 20 18 16 23 23 H 1.48497 * 109.46752 * 332.42381 * 20 18 16 24 24 C 1.41178 * 118.00391 * 359.97438 * 15 14 13 25 25 C 1.37588 * 119.01441 * 0.02562 * 24 15 14 26 26 N 1.32082 * 121.10950 * 359.71631 * 25 24 15 27 27 C 1.38161 * 120.05807 * 0.02710 * 7 6 5 28 28 H 1.09002 * 109.46671 * 300.00152 * 1 2 3 29 29 H 1.09004 * 109.47109 * 59.99902 * 1 2 3 30 30 H 1.08996 * 109.46682 * 179.97438 * 1 2 3 31 31 H 1.07993 * 120.03009 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.97105 * 180.29999 * 5 4 3 33 33 H 1.07997 * 119.94464 * 179.70261 * 6 5 4 34 34 H 1.09003 * 109.47054 * 29.98554 * 8 7 6 35 35 H 1.09000 * 109.47389 * 149.98127 * 8 7 6 36 36 H 1.08999 * 109.47085 * 300.00001 * 9 8 7 37 37 H 1.09001 * 109.47157 * 60.00493 * 9 8 7 38 38 H 0.96998 * 120.00485 * 355.11973 * 12 10 9 39 39 H 1.07998 * 120.60563 * 0.02562 * 14 13 12 40 40 H 0.97002 * 119.99512 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.49105 * 179.97438 * 24 15 14 42 42 H 1.08000 * 119.44134 * 179.97438 * 25 24 15 43 43 H 1.08003 * 120.03087 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9209 3.6048 0.0006 6 6 3.3020 3.6759 0.0001 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 0.0000 9 6 6.0701 2.6253 -1.4424 10 6 7.5750 2.7057 -1.4423 11 8 8.1805 2.7378 -0.3921 12 7 8.2479 2.7421 -2.6095 13 6 9.6314 2.9189 -2.6117 14 6 10.3007 3.0635 -3.8166 15 6 11.6976 3.2406 -3.7996 16 6 12.4279 3.3923 -5.0025 17 1 13.3288 3.9878 -5.0159 18 6 11.9823 2.7702 -6.1752 19 7 12.5071 3.0956 -7.3277 20 14 10.6382 1.4756 -6.0932 21 1 9.3158 2.1219 -6.2903 22 1 10.8588 0.4647 -7.1583 23 1 10.6714 0.8112 -4.7656 24 6 12.3478 3.2622 -2.5466 25 6 11.5981 3.1103 -1.4030 26 7 10.2882 2.9515 -1.4618 27 6 3.4312 1.2849 -0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2129 2.3204 -0.0106 32 1 1.3340 4.5115 0.0010 33 1 3.7923 4.6381 0.0002 34 1 5.8757 3.5066 0.5137 35 1 5.9715 1.7293 0.5141 36 1 5.7552 1.7169 -1.9560 37 1 5.6595 3.4943 -1.9565 38 1 7.7701 2.6452 -3.4481 39 1 9.7609 3.0409 -4.7517 40 1 12.1982 2.6649 -8.1401 41 1 13.4179 3.3951 -2.4868 42 1 12.0885 3.1253 -0.4409 43 1 4.0207 0.3799 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531924181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:45 Heat of formation + Delta-G solvation = -36.651932 kcal Electronic energy + Delta-G solvation = -25704.269244 eV Core-core repulsion = 21906.731082 eV Total energy + Delta-G solvation = -3797.538162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46108 -41.03739 -39.79617 -38.59350 -36.16726 -35.53147 -34.71938 -33.22006 -31.68865 -31.10531 -29.96591 -28.12635 -27.92077 -25.86580 -24.20962 -23.50034 -23.08878 -21.77406 -21.19154 -19.56021 -18.80901 -18.51316 -17.56388 -17.29920 -17.25804 -16.95012 -16.62826 -16.52338 -16.38390 -15.87520 -15.43871 -15.16016 -14.90606 -14.77423 -14.62735 -14.48285 -14.08767 -13.77669 -13.75938 -13.41510 -12.97798 -12.78082 -12.76707 -12.65308 -12.62458 -12.42791 -12.00771 -11.89158 -11.83260 -11.67156 -11.52048 -11.28692 -10.97367 -10.14508 -9.81416 -9.64419 -9.14147 -9.00226 -8.95178 -6.73831 0.34085 0.50261 0.52810 0.75305 1.22560 1.37887 1.47411 1.82535 2.05660 2.08884 2.38932 2.67858 2.80408 3.49405 3.52697 3.89314 3.92641 4.00425 4.08338 4.18893 4.30187 4.32629 4.39919 4.45091 4.50116 4.56044 4.59051 4.63501 4.64586 4.70719 4.74185 4.76681 4.96451 5.08171 5.11963 5.20596 5.28830 5.35919 5.51168 5.52222 5.69422 5.69751 5.84466 6.02578 6.19841 6.47163 6.47735 6.52147 6.68029 7.23338 7.68156 8.10966 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.002324 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.382528 B =12044.118636 C =12864.472106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.113 3.887 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.044 4.044 8 C -0.059 4.059 9 C -0.119 4.119 10 C 0.497 3.503 11 O -0.520 6.520 12 N -0.659 5.659 13 C 0.365 3.635 14 C -0.326 4.326 15 C 0.112 3.888 16 C -0.469 4.469 17 H 0.065 0.935 18 C 0.049 3.951 19 N -0.837 5.837 20 Si 0.969 3.031 21 H -0.242 1.242 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.282 4.282 25 C 0.128 3.872 26 N -0.571 5.571 27 C -0.166 4.166 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.425 0.575 39 H 0.119 0.881 40 H 0.298 0.702 41 H 0.121 0.879 42 H 0.160 0.840 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.640 -3.124 9.129 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.068 3.932 4 C -0.233 4.233 5 C -0.097 4.097 6 C -0.178 4.178 7 C -0.044 4.044 8 C -0.097 4.097 9 C -0.159 4.159 10 C 0.285 3.715 11 O -0.392 6.392 12 N -0.307 5.307 13 C 0.136 3.864 14 C -0.351 4.351 15 C 0.103 3.897 16 C -0.500 4.500 17 H 0.083 0.917 18 C -0.167 4.167 19 N -0.463 5.463 20 Si 0.792 3.208 21 H -0.167 1.167 22 H -0.205 1.205 23 H -0.187 1.187 24 C -0.306 4.306 25 C -0.024 4.024 26 N -0.291 5.291 27 C -0.185 4.185 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.263 0.737 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.139 0.861 42 H 0.178 0.822 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -26.619 -3.368 10.427 28.786 hybrid contribution 0.397 -0.188 -1.549 1.610 sum -26.223 -3.556 8.879 27.912 Atomic orbital electron populations 1.23324 0.76486 1.05425 1.02282 1.86052 1.23477 1.27160 1.88778 1.19191 0.92385 0.84889 0.96731 1.21507 1.01078 0.92015 1.08713 1.21262 0.94455 0.97877 0.96092 1.21242 0.94300 0.98337 1.03899 1.19606 0.94952 0.92521 0.97309 1.20241 0.90069 1.03943 0.95454 1.21668 0.87735 1.06895 0.99572 1.21670 0.91489 0.75477 0.82856 1.90770 1.70899 1.45836 1.31685 1.43678 1.04359 1.71459 1.11194 1.18305 0.84859 0.93462 0.89797 1.21347 0.94997 1.22426 0.96325 1.17917 0.91302 0.86721 0.93711 1.19478 1.09747 1.28632 0.92101 0.91660 1.26866 0.98102 0.98131 0.93635 1.69632 1.39400 1.37313 0.99965 0.85453 0.78832 0.77939 0.78537 1.16652 1.20498 1.18689 1.22121 1.00364 1.14995 0.93081 1.22401 0.88563 0.93314 0.98156 1.67477 1.10198 1.24597 1.26782 1.20441 0.91903 0.98474 1.07659 0.91668 0.91615 0.86676 0.83471 0.83242 0.84540 0.90465 0.91201 0.86605 0.86096 0.73673 0.86377 0.89122 0.86143 0.82243 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.26 10.50 -92.45 -0.97 -7.23 16 3 C 0.11 2.16 6.69 22.51 0.15 2.31 16 4 C -0.21 -3.19 9.04 22.37 0.20 -2.99 16 5 C -0.08 -1.11 10.04 22.26 0.22 -0.89 16 6 C -0.16 -2.63 9.70 22.28 0.22 -2.42 16 7 C -0.04 -0.84 5.13 -19.88 -0.10 -0.94 16 8 C -0.06 -1.27 4.63 29.85 0.14 -1.13 16 9 C -0.12 -2.44 5.68 29.85 0.17 -2.27 16 10 C 0.50 16.03 7.79 87.66 0.68 16.72 16 11 O -0.52 -21.51 14.24 -3.00 -0.04 -21.55 16 12 N -0.66 -22.50 5.39 -308.67 -1.66 -24.17 16 13 C 0.36 16.16 7.42 132.75 0.98 17.15 16 14 C -0.33 -15.15 6.94 22.98 0.16 -14.99 16 15 C 0.11 5.67 5.16 -21.11 -0.11 5.57 16 16 C -0.47 -25.46 9.67 23.52 0.23 -25.23 16 17 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 18 C 0.05 2.53 5.48 85.29 0.47 3.00 16 19 N -0.84 -43.71 13.92 21.84 0.30 -43.41 16 20 Si 0.97 40.44 24.43 68.60 1.68 42.11 16 21 H -0.24 -8.91 6.67 99.48 0.66 -8.25 16 22 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.26 -11.67 6.65 99.48 0.66 -11.01 16 24 C -0.28 -13.22 9.90 22.84 0.23 -13.00 16 25 C 0.13 5.68 11.15 84.50 0.94 6.62 16 26 N -0.57 -26.97 7.85 -193.54 -1.52 -28.49 16 27 C -0.17 -3.40 9.64 22.37 0.22 -3.18 16 28 H 0.06 0.46 7.67 -2.39 -0.02 0.44 16 29 H 0.07 0.46 7.65 -2.38 -0.02 0.44 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.15 1.43 6.30 -2.91 -0.02 1.41 16 32 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 35 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.43 11.09 8.70 -92.71 -0.81 10.28 16 39 H 0.12 5.14 4.43 -2.91 -0.01 5.12 16 40 H 0.30 13.85 8.29 -92.71 -0.77 13.08 16 41 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 42 H 0.16 5.96 8.06 -2.91 -0.02 5.93 16 43 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -71.29 362.52 3.84 -67.44 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.15 Total: 29.68 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.91 Total: -14.39 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -2.88 Total: -96.07 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.01 Total: -28.78 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.68 Total: 42.11 kcal Total: -71.29 3.84 -67.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531924181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.791 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds