Wall clock time and date at job start Tue Mar 31 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.46840 * 110.99750 * 293.01461 * 13 12 10 15 15 C 1.50167 * 110.24831 * 287.76481 * 14 13 12 16 16 C 1.31638 * 123.03917 * 342.92420 * 15 14 13 17 17 C 1.47605 * 118.67353 * 180.35748 * 16 15 14 18 18 C 1.35773 * 126.75009 * 104.99944 * 17 16 15 19 19 N 1.36534 * 109.70471 * 179.97438 * 18 17 16 20 20 H 0.97006 * 124.82103 * 179.97438 * 19 18 17 21 21 C 1.37536 * 110.35109 * 0.02562 * 19 18 17 22 22 N 1.32705 * 132.96132 * 179.97438 * 21 19 18 23 23 C 1.31590 * 121.68294 * 179.97438 * 22 21 19 24 24 C 1.38629 * 121.55462 * 0.02858 * 23 22 21 25 25 C 1.38290 * 119.35449 * 359.97278 * 24 23 22 26 26 C 1.39450 * 118.05651 * 359.72623 * 25 24 23 27 27 C 1.50341 * 122.65695 * 0.33152 * 16 15 14 28 28 C 1.47212 * 111.00526 * 169.99952 * 13 12 10 29 29 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 32 32 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 33 33 H 1.08998 * 109.34090 * 48.00787 * 14 13 12 34 34 H 1.09001 * 109.33844 * 167.52639 * 14 13 12 35 35 H 1.08001 * 118.48090 * 162.92155 * 15 14 13 36 36 H 1.08007 * 125.14457 * 359.96492 * 18 17 16 37 37 H 1.08003 * 119.22514 * 180.02562 * 23 22 21 38 38 H 1.08000 * 120.32535 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.96677 * 180.02562 * 25 24 23 40 40 H 1.08995 * 109.43416 * 223.39944 * 27 16 15 41 41 H 1.09000 * 109.42761 * 103.53981 * 27 16 15 42 42 H 1.08999 * 109.62835 * 173.80996 * 28 13 12 43 43 H 1.08996 * 109.62421 * 294.38509 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 2.9475 -6.0317 -1.2591 15 6 2.0591 -6.5088 -2.3718 16 6 0.9157 -7.1265 -2.1625 17 6 0.1219 -7.5615 -3.3285 18 6 -0.0107 -8.8303 -3.7933 19 7 -0.8251 -8.8363 -4.8892 20 1 -1.0677 -9.6280 -5.3946 21 6 -1.2515 -7.5604 -5.1753 22 7 -2.0376 -7.0601 -6.1201 23 6 -2.3041 -5.7733 -6.1877 24 6 -1.7758 -4.8741 -5.2744 25 6 -0.9494 -5.3376 -4.2671 26 6 -0.6866 -6.7060 -4.2119 27 6 0.3858 -7.4075 -0.7839 28 6 1.5124 -7.2599 0.2419 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0016 31 1 0.6174 -4.9204 0.8924 32 1 0.6167 -4.9209 -0.8875 33 1 3.3224 -5.0364 -1.4978 34 1 3.7894 -6.7156 -1.1509 35 1 2.3727 -6.3370 -3.3909 36 1 0.4572 -9.7027 -3.3615 37 1 -2.9495 -5.4090 -6.9733 38 1 -2.0074 -3.8218 -5.3488 39 1 -0.5240 -4.6601 -3.5415 40 1 -0.0077 -8.4233 -0.7467 41 1 -0.4115 -6.7016 -0.5511 42 1 2.2202 -8.0811 0.1291 43 1 1.0944 -7.2688 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532642828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:34 Heat of formation + Delta-G solvation = 62.340808 kcal Electronic energy + Delta-G solvation = -27135.959351 eV Core-core repulsion = 23375.006588 eV Total energy + Delta-G solvation = -3760.952763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63012 -39.58130 -37.95841 -37.45340 -34.11221 -33.65307 -32.18739 -31.20736 -30.67257 -29.94074 -29.05916 -27.51402 -24.71005 -23.79703 -23.55090 -22.70151 -22.38221 -20.37255 -19.21803 -18.48917 -17.90747 -16.98375 -16.76109 -16.28075 -16.02393 -15.37531 -15.16440 -14.83736 -14.69647 -14.49861 -14.14748 -13.93106 -13.54169 -13.50610 -13.34167 -13.01622 -12.69337 -12.46568 -12.31717 -12.24529 -12.11073 -11.75486 -11.46908 -11.31395 -11.13134 -10.82674 -10.69008 -10.41859 -10.34805 -10.17816 -9.53725 -9.44348 -8.72374 -8.57764 -8.37734 -7.98973 -7.92696 -7.79473 -6.38009 -3.78629 0.89746 1.29102 2.09336 2.52302 2.63511 3.22425 3.27887 3.32290 3.82369 3.95954 4.08293 4.28552 4.37862 4.61953 4.62648 4.91068 4.94347 5.08911 5.12718 5.22376 5.23891 5.28802 5.34301 5.37292 5.57767 5.60930 5.70449 5.78084 5.82632 5.93120 6.01093 6.04566 6.11561 6.22672 6.26355 6.34294 6.37437 6.39639 6.68120 6.84326 6.98478 7.12610 7.37332 7.42931 7.58425 7.89276 8.10383 8.66171 9.22040 9.59037 10.11178 10.79694 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003612 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.898646 B = 7751.080443 C = 9565.867898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.298 4.298 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.042 3.958 13 N -0.504 5.504 14 C 0.077 3.923 15 C -0.157 4.157 16 C -0.070 4.070 17 C -0.119 4.119 18 C 0.064 3.936 19 N -0.580 5.580 20 H 0.418 0.582 21 C 0.281 3.719 22 N -0.505 5.505 23 C 0.136 3.864 24 C -0.200 4.200 25 C -0.021 4.021 26 C -0.139 4.139 27 C -0.113 4.113 28 C 0.053 3.947 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.178 0.822 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.080 -17.449 -8.265 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.231 3.769 11 O -0.463 6.463 12 C -0.090 4.090 13 N -0.226 5.226 14 C -0.050 4.050 15 C -0.177 4.177 16 C -0.071 4.071 17 C -0.127 4.127 18 C -0.062 4.062 19 N -0.186 5.186 20 H 0.256 0.744 21 C 0.048 3.952 22 N -0.218 5.218 23 C -0.030 4.030 24 C -0.222 4.222 25 C -0.047 4.047 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.076 4.076 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.195 0.805 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.397 -17.936 -8.496 20.327 hybrid contribution -0.749 0.916 -0.464 1.271 sum -5.146 -17.019 -8.960 19.910 Atomic orbital electron populations 1.69605 1.05895 1.28158 1.50734 1.25228 0.95600 0.99605 0.97419 0.85951 0.78785 0.80627 0.79050 1.19958 1.21024 1.19922 1.19643 0.93310 0.82261 1.47574 0.88012 1.41857 1.09140 1.04573 1.64589 1.19783 0.88401 0.84591 0.84149 1.90486 1.13734 1.86978 1.55120 1.21890 0.94303 0.91178 1.01590 1.62285 1.25471 1.01579 1.33244 1.21289 0.95020 1.03774 0.84958 1.23499 0.96035 0.97251 1.00900 1.18917 0.94685 1.01606 0.91876 1.19045 1.03655 0.91435 0.98516 1.21916 0.96386 0.98633 0.89264 1.41368 1.43168 1.06748 1.27337 0.74443 1.18352 0.97080 0.85667 0.94052 1.66485 1.16128 1.16130 1.23074 1.22430 0.96639 0.86468 0.97418 1.21944 1.01298 1.01564 0.97390 1.21075 0.93853 0.93254 0.96529 1.19815 1.02470 0.93999 0.98322 1.21045 0.99556 1.02105 0.92447 1.22321 0.94769 0.92371 0.98128 0.91894 0.77557 0.89632 0.92918 0.87199 0.89838 0.87660 0.80470 0.82309 0.84277 0.84555 0.90950 0.90685 0.90526 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.56 -14.23 5.29 -10.96 -0.06 -14.28 16 10 C 0.45 10.43 7.39 -10.99 -0.08 10.35 16 11 O -0.58 -15.40 14.07 5.55 0.08 -15.32 16 12 C 0.04 0.75 4.50 -4.98 -0.02 0.73 16 13 N -0.50 -8.26 4.75 -237.58 -1.13 -9.39 16 14 C 0.08 1.23 5.57 -5.27 -0.03 1.20 16 15 C -0.16 -2.20 9.05 -36.43 -0.33 -2.53 16 16 C -0.07 -0.89 5.09 -102.84 -0.52 -1.41 16 17 C -0.12 -1.47 5.51 -103.33 -0.57 -2.04 16 18 C 0.06 0.62 11.80 -16.34 -0.19 0.42 16 19 N -0.58 -5.73 6.02 -11.89 -0.07 -5.80 16 20 H 0.42 2.88 8.96 -40.82 -0.37 2.52 16 21 C 0.28 3.69 8.41 -155.61 -1.31 2.38 16 22 N -0.50 -6.65 10.39 -12.29 -0.13 -6.78 16 23 C 0.14 1.54 11.15 -17.51 -0.20 1.35 16 24 C -0.20 -2.36 10.10 -39.42 -0.40 -2.75 16 25 C -0.02 -0.28 10.22 -39.11 -0.40 -0.68 16 26 C -0.14 -1.93 6.37 -104.92 -0.67 -2.59 16 27 C -0.11 -1.30 5.25 -28.02 -0.15 -1.45 16 28 C 0.05 0.65 6.02 -3.61 -0.02 0.63 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 31 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 32 H 0.05 0.90 6.02 -51.93 -0.31 0.59 16 33 H 0.11 2.14 5.86 -51.93 -0.30 1.83 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.11 1.48 7.98 -52.49 -0.42 1.06 16 36 H 0.18 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.16 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.93 7.14 -51.93 -0.37 0.56 16 42 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -33.09 358.19 -10.74 -43.83 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.40 Total: 14.36 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -5.13 Total: -4.32 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.66 Total: -59.94 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.08 Total: -15.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.09 -10.74 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532642828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.171 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds