Wall clock time and date at job start Tue Mar 31 2020 14:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.46840 * 110.99750 * 293.01461 * 13 12 10 15 15 C 1.50167 * 110.24831 * 287.76481 * 14 13 12 16 16 C 1.31638 * 123.03917 * 342.92420 * 15 14 13 17 17 C 1.47605 * 118.67353 * 180.35748 * 16 15 14 18 18 C 1.35773 * 126.75009 * 104.99944 * 17 16 15 19 19 N 1.36534 * 109.70471 * 179.97438 * 18 17 16 20 20 H 0.97006 * 124.82103 * 179.97438 * 19 18 17 21 21 C 1.37536 * 110.35109 * 0.02562 * 19 18 17 22 22 N 1.32705 * 132.96132 * 179.97438 * 21 19 18 23 23 C 1.31590 * 121.68294 * 179.97438 * 22 21 19 24 24 C 1.38629 * 121.55462 * 0.02858 * 23 22 21 25 25 C 1.38290 * 119.35449 * 359.97278 * 24 23 22 26 26 C 1.39450 * 118.05651 * 359.72623 * 25 24 23 27 27 C 1.50341 * 122.65695 * 0.33152 * 16 15 14 28 28 C 1.47212 * 111.00526 * 169.99952 * 13 12 10 29 29 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 32 32 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 33 33 H 1.08998 * 109.34090 * 48.00787 * 14 13 12 34 34 H 1.09001 * 109.33844 * 167.52639 * 14 13 12 35 35 H 1.08001 * 118.48090 * 162.92155 * 15 14 13 36 36 H 1.08007 * 125.14457 * 359.96492 * 18 17 16 37 37 H 1.08003 * 119.22514 * 180.02562 * 23 22 21 38 38 H 1.08000 * 120.32535 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.96677 * 180.02562 * 25 24 23 40 40 H 1.08995 * 109.43416 * 223.39944 * 27 16 15 41 41 H 1.09000 * 109.42761 * 103.53981 * 27 16 15 42 42 H 1.08999 * 109.62835 * 173.80996 * 28 13 12 43 43 H 1.08996 * 109.62421 * 294.38509 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 2.9475 -6.0317 -1.2591 15 6 2.0591 -6.5088 -2.3718 16 6 0.9157 -7.1265 -2.1625 17 6 0.1219 -7.5615 -3.3285 18 6 -0.0107 -8.8303 -3.7933 19 7 -0.8251 -8.8363 -4.8892 20 1 -1.0677 -9.6280 -5.3946 21 6 -1.2515 -7.5604 -5.1753 22 7 -2.0376 -7.0601 -6.1201 23 6 -2.3041 -5.7733 -6.1877 24 6 -1.7758 -4.8741 -5.2744 25 6 -0.9494 -5.3376 -4.2671 26 6 -0.6866 -6.7060 -4.2119 27 6 0.3858 -7.4075 -0.7839 28 6 1.5124 -7.2599 0.2419 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 0.0016 31 1 0.6174 -4.9204 0.8924 32 1 0.6167 -4.9209 -0.8875 33 1 3.3224 -5.0364 -1.4978 34 1 3.7894 -6.7156 -1.1509 35 1 2.3727 -6.3370 -3.3909 36 1 0.4572 -9.7027 -3.3615 37 1 -2.9495 -5.4090 -6.9733 38 1 -2.0074 -3.8218 -5.3488 39 1 -0.5240 -4.6601 -3.5415 40 1 -0.0077 -8.4233 -0.7467 41 1 -0.4115 -6.7016 -0.5511 42 1 2.2202 -8.0811 0.1291 43 1 1.0944 -7.2688 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532642828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:33 Heat of formation + Delta-G solvation = 39.961240 kcal Electronic energy + Delta-G solvation = -27136.929802 eV Core-core repulsion = 23375.006588 eV Total energy + Delta-G solvation = -3761.923214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51243 -40.93274 -39.31804 -38.69292 -35.95043 -34.88143 -33.31453 -33.14479 -31.74729 -30.88681 -30.13902 -28.85164 -26.56453 -24.72322 -24.70309 -23.73108 -23.38433 -21.59911 -20.78996 -19.88878 -19.37228 -18.22821 -17.83268 -17.61980 -17.05914 -16.57683 -16.47451 -16.14934 -16.04710 -15.78821 -15.54164 -15.35209 -15.02431 -14.66910 -14.24789 -14.08864 -14.03927 -13.84817 -13.47194 -13.40014 -13.18674 -13.06597 -12.94359 -12.91003 -12.56712 -12.40388 -12.15004 -12.11038 -11.70384 -11.43509 -11.32408 -10.49326 -10.24663 -9.97601 -9.73634 -9.47326 -9.12429 -8.86590 -8.43297 -5.91769 -0.01785 0.35772 1.07551 1.41007 1.42427 1.53231 1.64351 1.83678 2.09487 2.30736 2.87488 2.88394 3.23552 3.43513 3.54920 3.67064 3.84296 4.02492 4.03727 4.15365 4.20092 4.27703 4.33962 4.40000 4.44143 4.53017 4.56211 4.66216 4.73980 4.77157 4.80757 4.92619 5.00179 5.07634 5.13508 5.30844 5.35803 5.43422 5.50205 5.66504 5.89953 5.94553 5.98576 6.16773 6.26304 6.38526 6.64162 7.00750 7.16272 7.60003 8.16143 8.73933 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003612 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.898646 B = 7751.080443 C = 9565.867898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.442 3.558 11 O -0.614 6.614 12 C 0.059 3.941 13 N -0.523 5.523 14 C 0.086 3.914 15 C -0.177 4.177 16 C -0.044 4.044 17 C -0.160 4.160 18 C 0.098 3.902 19 N -0.567 5.567 20 H 0.434 0.566 21 C 0.260 3.740 22 N -0.517 5.517 23 C 0.131 3.869 24 C -0.199 4.199 25 C -0.049 4.049 26 C -0.159 4.159 27 C -0.110 4.110 28 C 0.054 3.946 29 H 0.277 0.723 30 H 0.394 0.606 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.222 0.778 37 H 0.193 0.807 38 H 0.156 0.844 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -19.444 -8.517 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.500 6.500 12 C -0.072 4.072 13 N -0.245 5.245 14 C -0.042 4.042 15 C -0.197 4.197 16 C -0.045 4.045 17 C -0.168 4.168 18 C -0.029 4.029 19 N -0.174 5.174 20 H 0.274 0.726 21 C 0.027 3.973 22 N -0.230 5.230 23 C -0.034 4.034 24 C -0.220 4.220 25 C -0.076 4.076 26 C -0.166 4.166 27 C -0.148 4.148 28 C -0.073 4.073 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.238 0.762 37 H 0.209 0.791 38 H 0.173 0.827 39 H 0.138 0.862 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.632 -19.968 -8.761 22.521 hybrid contribution -0.393 1.444 -0.422 1.555 sum -6.025 -18.523 -9.183 21.535 Atomic orbital electron populations 1.69670 1.06784 1.29232 1.50468 1.25987 0.96500 1.02239 0.96372 0.85035 0.77807 0.76862 0.78918 1.19792 1.19483 1.19724 1.19617 0.92659 0.84021 1.49881 0.90359 1.41923 1.09189 1.04708 1.65393 1.20791 0.88314 0.85934 0.81968 1.90459 1.15639 1.87808 1.56104 1.21685 0.93904 0.88867 1.02734 1.62263 1.25861 1.02901 1.33499 1.21024 0.95844 1.01574 0.85732 1.23218 0.97150 0.99654 0.99677 1.19029 0.93293 0.99345 0.92871 1.19099 1.05576 0.92584 0.99510 1.22522 0.93931 0.98806 0.87643 1.41443 1.42377 1.06351 1.27269 0.72561 1.18603 0.97637 0.86842 0.94184 1.66565 1.16354 1.16901 1.23214 1.22979 0.96625 0.85955 0.97879 1.22187 1.00451 1.02619 0.96772 1.21132 0.95398 0.93601 0.97438 1.20074 1.03090 0.94240 0.99157 1.21079 0.98878 1.03728 0.91154 1.22461 0.95241 0.90498 0.99117 0.91376 0.77218 0.87664 0.92213 0.91740 0.88743 0.88609 0.76206 0.79059 0.82661 0.86228 0.87827 0.91381 0.88700 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 2 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 3 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -30.08 5.29 -306.99 -1.62 -31.70 16 10 C 0.44 21.54 7.39 87.66 0.65 22.19 16 11 O -0.61 -34.29 14.07 -3.07 -0.04 -34.33 16 12 C 0.06 2.14 4.50 85.56 0.38 2.53 16 13 N -0.52 -16.91 4.75 -905.58 -4.30 -21.21 16 14 C 0.09 2.82 5.57 85.40 0.48 3.29 16 15 C -0.18 -5.02 9.05 24.88 0.23 -4.79 16 16 C -0.04 -1.07 5.09 -18.14 -0.09 -1.16 16 17 C -0.16 -3.71 5.51 -19.03 -0.10 -3.82 16 18 C 0.10 1.55 11.80 83.39 0.98 2.53 16 19 N -0.57 -9.65 6.02 -191.52 -1.15 -10.80 16 20 H 0.43 4.59 8.96 -92.70 -0.83 3.76 16 21 C 0.26 6.48 8.41 133.83 1.13 7.61 16 22 N -0.52 -12.97 10.39 -192.78 -2.00 -14.97 16 23 C 0.13 2.82 11.15 84.82 0.95 3.77 16 24 C -0.20 -4.66 10.10 22.38 0.23 -4.44 16 25 C -0.05 -1.38 10.22 22.57 0.23 -1.15 16 26 C -0.16 -4.34 6.37 -20.06 -0.13 -4.46 16 27 C -0.11 -2.24 5.25 29.76 0.16 -2.09 16 28 C 0.05 1.20 6.02 86.27 0.52 1.72 16 29 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 30 H 0.39 19.73 7.90 -92.71 -0.73 19.00 16 31 H 0.11 3.37 8.08 -2.39 -0.02 3.35 16 32 H 0.06 2.08 6.02 -2.39 -0.01 2.06 16 33 H 0.06 2.69 5.86 -2.39 -0.01 2.68 16 34 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.10 2.84 7.98 -2.91 -0.02 2.82 16 36 H 0.22 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 38 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 39 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.54 7.14 -2.39 -0.02 1.52 16 42 H 0.09 1.79 8.07 -2.39 -0.02 1.77 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -74.58 358.19 -0.43 -75.00 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.49 Total: 39.14 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.88 Total: 3.28 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -8.79 Total: -128.51 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.04 Total: -34.33 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.58 -0.43 -75.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532642828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.965 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds