Wall clock time and date at job start Tue Mar 31 2020 14:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00023 * 2 1 4 4 C 1.50697 * 109.47550 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99714 * 270.02325 * 4 3 2 6 6 C 1.38217 * 119.99785 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00038 * 359.82082 * 6 5 4 8 8 C 1.38211 * 119.99757 * 0.41060 * 7 6 5 9 9 C 1.50702 * 119.99564 * 179.81633 * 8 7 6 10 10 C 1.50700 * 109.46800 * 269.72236 * 9 8 7 11 11 O 1.21276 * 120.00316 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99659 * 179.97438 * 10 9 8 13 13 C 1.39475 * 120.00058 * 184.87146 * 12 10 9 14 14 C 1.38589 * 119.58120 * 182.94614 * 13 12 10 15 15 C 1.40813 * 118.79406 * 179.70006 * 14 13 12 16 16 C 1.41550 * 120.99641 * 180.25456 * 15 14 13 17 17 H 1.07999 * 120.00002 * 154.03193 * 16 15 14 18 18 C 1.40029 * 119.99998 * 334.03763 * 16 15 14 19 19 N 1.30736 * 120.00307 * 163.02668 * 18 16 15 20 20 Si 1.86806 * 119.99947 * 343.02242 * 18 16 15 21 21 H 1.48491 * 109.47393 * 95.20904 * 20 18 16 22 22 H 1.48502 * 109.47287 * 215.21056 * 20 18 16 23 23 H 1.48504 * 109.46767 * 335.20605 * 20 18 16 24 24 C 1.41170 * 118.00675 * 0.28053 * 15 14 13 25 25 C 1.37586 * 119.01672 * 359.97438 * 24 15 14 26 26 N 1.32082 * 121.10984 * 0.02844 * 25 24 15 27 27 C 1.38213 * 120.00221 * 89.99604 * 4 3 2 28 28 H 1.08997 * 109.47409 * 300.00104 * 1 2 3 29 29 H 1.09006 * 109.47335 * 60.00331 * 1 2 3 30 30 H 1.09003 * 109.47296 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47484 * 59.99893 * 3 2 1 32 32 H 1.09000 * 109.47240 * 300.00186 * 3 2 1 33 33 H 1.07998 * 120.00272 * 359.97438 * 5 4 3 34 34 H 1.08006 * 119.99633 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.99635 * 180.23052 * 7 6 5 36 36 H 1.09004 * 109.47003 * 149.72530 * 9 8 7 37 37 H 1.08998 * 109.47417 * 29.72697 * 9 8 7 38 38 H 0.96997 * 120.00311 * 4.87422 * 12 10 9 39 39 H 1.07995 * 120.60528 * 359.97438 * 14 13 12 40 40 H 0.96999 * 120.00271 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.48938 * 179.97438 * 24 15 14 42 42 H 1.07999 * 119.44565 * 180.02562 * 25 24 15 43 43 H 1.07992 * 120.00098 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2020 1.1313 1.1965 6 6 5.5798 1.0218 1.1959 7 6 6.2682 0.9637 -0.0017 8 6 5.5792 1.0237 -1.1983 9 6 6.3299 0.9645 -2.5037 10 6 6.6917 2.3613 -2.9388 11 8 6.3719 3.3111 -2.2560 12 7 7.3716 2.5547 -4.0863 13 6 7.7950 3.8361 -4.4385 14 6 8.4395 4.0351 -5.6492 15 6 8.8543 5.3366 -5.9909 16 6 9.5117 5.5937 -7.2179 17 1 9.4551 6.5748 -7.6656 18 6 10.2353 4.5758 -7.8511 19 7 10.5589 4.6913 -9.1125 20 14 10.7383 3.0527 -6.8935 21 1 9.7342 1.9798 -7.1069 22 1 12.0674 2.5878 -7.3654 23 1 10.8134 3.3800 -5.4470 24 6 8.5953 6.3774 -5.0729 25 6 7.9537 6.0816 -3.8923 26 7 7.5805 4.8466 -3.6092 27 6 4.2009 1.1322 -1.1979 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.6641 1.1738 2.1320 34 1 6.1184 0.9782 2.1311 35 1 7.3445 0.8743 -0.0021 36 1 5.7020 0.4986 -3.2632 37 1 7.2391 0.3775 -2.3738 38 1 7.5664 1.8029 -4.6674 39 1 8.6164 3.2077 -6.3204 40 1 11.0598 3.9860 -9.5513 41 1 8.8965 7.3907 -5.2940 42 1 7.7517 6.8725 -3.1852 43 1 3.6623 1.1753 -2.1329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547959259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:27 Heat of formation + Delta-G solvation = -18.225091 kcal Electronic energy + Delta-G solvation = -26029.919626 eV Core-core repulsion = 22233.180513 eV Total energy + Delta-G solvation = -3796.739114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.15395 -39.35267 -38.11122 -37.58300 -34.43084 -33.80947 -33.12102 -31.78763 -31.32802 -29.33202 -27.71693 -27.23002 -26.00179 -25.52062 -22.61954 -22.41229 -21.87168 -20.65275 -19.69683 -17.77433 -17.22685 -16.75824 -16.52248 -16.30178 -16.04506 -15.67558 -15.44996 -15.35624 -14.60732 -14.46567 -14.31275 -14.08524 -13.70672 -13.21000 -13.03622 -12.97315 -12.88215 -12.78376 -12.51761 -12.46842 -11.91159 -11.69709 -11.63002 -11.16019 -11.01308 -10.98863 -10.85651 -10.72863 -10.02974 -9.98792 -9.89025 -9.58161 -9.39391 -8.88272 -8.73547 -8.26986 -7.88079 -7.26412 -7.11404 -4.76998 1.21087 1.34879 2.28026 2.60577 2.95582 3.05578 3.19763 3.29829 3.32070 3.56693 3.84118 3.99693 4.53179 4.54313 4.65024 4.76572 4.96972 4.98561 5.02099 5.05205 5.11468 5.14678 5.24660 5.34549 5.40618 5.41198 5.43482 5.57798 5.75504 5.93803 5.99741 6.28952 6.35613 6.37930 6.39329 6.46980 6.54170 6.55385 6.82854 6.91250 6.93999 7.11151 7.23475 7.55220 7.71826 8.01305 8.17218 8.39939 8.61573 8.68205 9.44611 9.89537 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.002471 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.150052 B =11327.715764 C =11423.550238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.094 4.094 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.096 4.096 8 C -0.062 4.062 9 C -0.105 4.105 10 C 0.500 3.500 11 O -0.466 6.466 12 N -0.666 5.666 13 C 0.371 3.629 14 C -0.324 4.324 15 C 0.126 3.874 16 C -0.434 4.434 17 H 0.095 0.905 18 C 0.084 3.916 19 N -0.797 5.797 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.244 1.244 24 C -0.274 4.274 25 C 0.129 3.871 26 N -0.557 5.557 27 C -0.081 4.081 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.407 0.593 39 H 0.106 0.894 40 H 0.288 0.712 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 -11.831 14.155 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.094 4.094 5 C -0.119 4.119 6 C -0.140 4.140 7 C -0.114 4.114 8 C -0.063 4.063 9 C -0.145 4.145 10 C 0.284 3.716 11 O -0.335 6.335 12 N -0.312 5.312 13 C 0.144 3.856 14 C -0.349 4.349 15 C 0.118 3.882 16 C -0.464 4.464 17 H 0.113 0.887 18 C -0.137 4.137 19 N -0.421 5.421 20 Si 0.746 3.254 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.167 1.167 24 C -0.297 4.297 25 C -0.023 4.023 26 N -0.277 5.277 27 C -0.100 4.100 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.242 0.758 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.154 -11.528 15.268 22.665 hybrid contribution 0.677 -0.624 -1.093 1.429 sum -11.477 -12.152 14.175 21.916 Atomic orbital electron populations 1.22757 0.81096 1.02766 1.00043 1.87968 1.19515 1.27643 1.95420 1.21346 0.90009 0.84885 1.01006 1.19447 0.93716 1.02685 0.93557 1.20969 0.94338 0.99358 0.97200 1.21052 0.94154 1.00836 0.97942 1.21033 0.99766 0.98609 0.91958 1.19231 0.93317 0.99946 0.93766 1.20736 1.01907 0.95699 0.96150 1.20551 0.78848 0.90992 0.81234 1.90809 1.48524 1.42508 1.51618 1.43574 1.55949 1.08445 1.23277 1.17994 0.92839 0.84664 0.90146 1.21152 1.15729 0.98985 0.99066 1.17677 0.88665 0.90143 0.91727 1.19530 1.25802 0.99447 1.01595 0.88686 1.26236 0.93561 0.99601 0.94264 1.69637 1.28126 1.34139 1.10159 0.86208 0.76821 0.79981 0.82395 1.19738 1.21887 1.16693 1.21865 1.11327 0.99677 0.96880 1.21887 0.93456 0.92243 0.94722 1.67315 1.27923 0.99186 1.33270 1.20837 0.93492 0.98123 0.97510 0.94079 0.93973 0.89600 0.92413 0.92303 0.86218 0.85909 0.86055 0.88044 0.87960 0.75808 0.87606 0.90122 0.87256 0.85338 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.20 10.69 -35.23 -0.38 -4.58 16 3 C 0.10 1.07 6.06 36.00 0.22 1.28 16 4 C -0.09 -1.15 5.51 -104.62 -0.58 -1.73 16 5 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 6 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 7 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 8 C -0.06 -0.82 4.37 -104.62 -0.46 -1.27 16 9 C -0.10 -1.26 5.83 -29.03 -0.17 -1.43 16 10 C 0.50 8.67 7.78 -10.99 -0.09 8.59 16 11 O -0.47 -10.12 14.30 5.56 0.08 -10.04 16 12 N -0.67 -12.08 5.39 -11.49 -0.06 -12.14 16 13 C 0.37 8.47 7.41 -154.70 -1.15 7.32 16 14 C -0.32 -7.67 7.01 -38.48 -0.27 -7.94 16 15 C 0.13 3.17 5.23 -106.55 -0.56 2.61 16 16 C -0.43 -11.36 9.66 -37.65 -0.36 -11.72 16 17 H 0.10 2.59 8.06 -52.49 -0.42 2.16 16 18 C 0.08 2.12 5.45 -17.35 -0.09 2.03 16 19 N -0.80 -20.28 13.92 55.55 0.77 -19.51 16 20 Si 0.92 19.83 24.42 -169.99 -4.15 15.68 16 21 H -0.27 -5.45 6.70 56.52 0.38 -5.07 16 22 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.24 -5.51 6.66 56.52 0.38 -5.13 16 24 C -0.27 -6.41 9.90 -38.71 -0.38 -6.79 16 25 C 0.13 2.93 11.15 -17.68 -0.20 2.73 16 26 N -0.56 -13.51 7.87 -12.52 -0.10 -13.61 16 27 C -0.08 -1.06 9.36 -39.58 -0.37 -1.43 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.41 5.84 8.69 -40.82 -0.35 5.49 16 39 H 0.11 2.39 4.23 -52.49 -0.22 2.17 16 40 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 41 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 42 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 43 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -32.90 366.62 -8.48 -41.38 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.67 Total: 8.59 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.51 Total: -11.30 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.61 Total: -45.26 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.30 Total: -14.62 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.15 Total: 15.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.90 -8.48 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547959259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.160 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds