Wall clock time and date at job start Tue Mar 31 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00023 * 2 1 4 4 C 1.50697 * 109.47550 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99714 * 270.02325 * 4 3 2 6 6 C 1.38217 * 119.99785 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00038 * 359.82082 * 6 5 4 8 8 C 1.38211 * 119.99757 * 0.41060 * 7 6 5 9 9 C 1.50702 * 119.99564 * 179.81633 * 8 7 6 10 10 C 1.50700 * 109.46800 * 269.72236 * 9 8 7 11 11 O 1.21276 * 120.00316 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99659 * 179.97438 * 10 9 8 13 13 C 1.39475 * 120.00058 * 184.87146 * 12 10 9 14 14 C 1.38589 * 119.58120 * 182.94614 * 13 12 10 15 15 C 1.40813 * 118.79406 * 179.70006 * 14 13 12 16 16 C 1.41550 * 120.99641 * 180.25456 * 15 14 13 17 17 H 1.07999 * 120.00002 * 154.03193 * 16 15 14 18 18 C 1.40029 * 119.99998 * 334.03763 * 16 15 14 19 19 N 1.30736 * 120.00307 * 163.02668 * 18 16 15 20 20 Si 1.86806 * 119.99947 * 343.02242 * 18 16 15 21 21 H 1.48491 * 109.47393 * 95.20904 * 20 18 16 22 22 H 1.48502 * 109.47287 * 215.21056 * 20 18 16 23 23 H 1.48504 * 109.46767 * 335.20605 * 20 18 16 24 24 C 1.41170 * 118.00675 * 0.28053 * 15 14 13 25 25 C 1.37586 * 119.01672 * 359.97438 * 24 15 14 26 26 N 1.32082 * 121.10984 * 0.02844 * 25 24 15 27 27 C 1.38213 * 120.00221 * 89.99604 * 4 3 2 28 28 H 1.08997 * 109.47409 * 300.00104 * 1 2 3 29 29 H 1.09006 * 109.47335 * 60.00331 * 1 2 3 30 30 H 1.09003 * 109.47296 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47484 * 59.99893 * 3 2 1 32 32 H 1.09000 * 109.47240 * 300.00186 * 3 2 1 33 33 H 1.07998 * 120.00272 * 359.97438 * 5 4 3 34 34 H 1.08006 * 119.99633 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.99635 * 180.23052 * 7 6 5 36 36 H 1.09004 * 109.47003 * 149.72530 * 9 8 7 37 37 H 1.08998 * 109.47417 * 29.72697 * 9 8 7 38 38 H 0.96997 * 120.00311 * 4.87422 * 12 10 9 39 39 H 1.07995 * 120.60528 * 359.97438 * 14 13 12 40 40 H 0.96999 * 120.00271 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.48938 * 179.97438 * 24 15 14 42 42 H 1.07999 * 119.44565 * 180.02562 * 25 24 15 43 43 H 1.07992 * 120.00098 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 6 4.2020 1.1313 1.1965 6 6 5.5798 1.0218 1.1959 7 6 6.2682 0.9637 -0.0017 8 6 5.5792 1.0237 -1.1983 9 6 6.3299 0.9645 -2.5037 10 6 6.6917 2.3613 -2.9388 11 8 6.3719 3.3111 -2.2560 12 7 7.3716 2.5547 -4.0863 13 6 7.7950 3.8361 -4.4385 14 6 8.4395 4.0351 -5.6492 15 6 8.8543 5.3366 -5.9909 16 6 9.5117 5.5937 -7.2179 17 1 9.4551 6.5748 -7.6656 18 6 10.2353 4.5758 -7.8511 19 7 10.5589 4.6913 -9.1125 20 14 10.7383 3.0527 -6.8935 21 1 9.7342 1.9798 -7.1069 22 1 12.0674 2.5878 -7.3654 23 1 10.8134 3.3800 -5.4470 24 6 8.5953 6.3774 -5.0729 25 6 7.9537 6.0816 -3.8923 26 7 7.5805 4.8466 -3.6092 27 6 4.2009 1.1322 -1.1979 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.6641 1.1738 2.1320 34 1 6.1184 0.9782 2.1311 35 1 7.3445 0.8743 -0.0021 36 1 5.7020 0.4986 -3.2632 37 1 7.2391 0.3775 -2.3738 38 1 7.5664 1.8029 -4.6674 39 1 8.6164 3.2077 -6.3204 40 1 11.0598 3.9860 -9.5513 41 1 8.8965 7.3907 -5.2940 42 1 7.7517 6.8725 -3.1852 43 1 3.6623 1.1753 -2.1329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547959259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:26 Heat of formation + Delta-G solvation = -38.519751 kcal Electronic energy + Delta-G solvation = -26030.799669 eV Core-core repulsion = 22233.180513 eV Total energy + Delta-G solvation = -3797.619156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49610 -40.51484 -39.53610 -38.46399 -36.15104 -35.53096 -34.08925 -33.21319 -32.63041 -30.90081 -28.71098 -28.08643 -27.85983 -26.23494 -24.22788 -23.88405 -22.93252 -21.90453 -21.09756 -19.55369 -18.67358 -17.67876 -17.57760 -17.31975 -17.21457 -17.10085 -16.45003 -16.40520 -16.35573 -15.86372 -15.58447 -15.31668 -14.95109 -14.77976 -14.68484 -14.46708 -14.02667 -13.59710 -13.50917 -13.34516 -13.26519 -12.85484 -12.77532 -12.66564 -12.59333 -12.34939 -11.99904 -11.83785 -11.78519 -11.53721 -11.27598 -10.99875 -10.67876 -10.16362 -9.77459 -9.74360 -9.56256 -9.01087 -8.97184 -6.74153 0.32311 0.45182 0.54474 0.76198 1.22778 1.39361 1.48524 1.83341 2.07207 2.09024 2.65405 2.67229 3.17387 3.53595 3.62048 3.75242 3.85019 3.97884 4.15660 4.18135 4.26644 4.34206 4.43371 4.48753 4.52182 4.54406 4.58212 4.59705 4.60809 4.69091 4.76086 4.77256 4.85407 5.08019 5.10648 5.14101 5.29429 5.51409 5.52647 5.60265 5.64094 5.68535 6.02343 6.07165 6.17885 6.19196 6.48301 6.53018 6.66715 7.25166 7.70244 8.06538 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.002471 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.150052 B =11327.715764 C =11423.550238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.105 3.895 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.111 4.111 8 C -0.080 4.080 9 C -0.091 4.091 10 C 0.499 3.501 11 O -0.513 6.513 12 N -0.658 5.658 13 C 0.368 3.632 14 C -0.331 4.331 15 C 0.111 3.889 16 C -0.466 4.466 17 H 0.065 0.935 18 C 0.050 3.950 19 N -0.829 5.829 20 Si 0.971 3.029 21 H -0.242 1.242 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.287 4.287 25 C 0.129 3.871 26 N -0.575 5.575 27 C -0.100 4.100 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.426 0.574 39 H 0.118 0.882 40 H 0.300 0.700 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 -14.246 15.706 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.029 3.971 4 C -0.109 4.109 5 C -0.126 4.126 6 C -0.145 4.145 7 C -0.129 4.129 8 C -0.080 4.080 9 C -0.130 4.130 10 C 0.286 3.714 11 O -0.384 6.384 12 N -0.307 5.307 13 C 0.140 3.860 14 C -0.356 4.356 15 C 0.102 3.898 16 C -0.496 4.496 17 H 0.083 0.917 18 C -0.168 4.168 19 N -0.454 5.454 20 Si 0.794 3.206 21 H -0.166 1.166 22 H -0.204 1.204 23 H -0.185 1.185 24 C -0.310 4.310 25 C -0.023 4.023 26 N -0.295 5.295 27 C -0.118 4.118 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.264 0.736 39 H 0.135 0.865 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.174 0.826 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.786 -13.984 16.786 25.315 hybrid contribution 0.763 0.191 -1.479 1.676 sum -12.023 -13.793 15.307 23.856 Atomic orbital electron populations 1.22954 0.79388 1.03913 1.00971 1.87923 1.21448 1.27926 1.95603 1.21355 0.89058 0.84972 1.01750 1.19779 0.94913 1.02440 0.93731 1.21290 0.94667 0.98743 0.97853 1.21394 0.94427 1.00028 0.98696 1.21311 1.00511 0.98810 0.92276 1.19427 0.93534 1.00618 0.94446 1.20753 1.03718 0.92186 0.96378 1.21498 0.77195 0.92702 0.79984 1.90787 1.50211 1.44618 1.52799 1.43640 1.55602 1.07289 1.24127 1.18260 0.91998 0.86170 0.89615 1.21252 1.15917 0.98713 0.99747 1.17892 0.88680 0.91575 0.91630 1.19514 1.28226 0.98940 1.02899 0.91660 1.26937 0.92979 1.01984 0.94910 1.69647 1.28938 1.35637 1.11187 0.85426 0.77848 0.77527 0.79830 1.16638 1.20423 1.18458 1.22050 1.11838 1.00023 0.97134 1.22338 0.92410 0.92750 0.94832 1.67459 1.28250 0.99909 1.33926 1.21042 0.93896 0.98803 0.98080 0.92819 0.93363 0.88420 0.90996 0.92213 0.84248 0.83678 0.85008 0.85123 0.84881 0.73607 0.86486 0.88946 0.86310 0.82550 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.34 10.69 -148.98 -1.59 -9.93 16 3 C 0.10 2.02 6.06 71.23 0.43 2.45 16 4 C -0.11 -2.52 5.51 -19.87 -0.11 -2.63 16 5 C -0.11 -2.27 9.70 22.27 0.22 -2.05 16 6 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 7 C -0.11 -2.56 9.70 22.27 0.22 -2.34 16 8 C -0.08 -1.94 4.37 -19.87 -0.09 -2.03 16 9 C -0.09 -1.90 5.83 29.10 0.17 -1.73 16 10 C 0.50 16.28 7.78 87.66 0.68 16.96 16 11 O -0.51 -21.73 14.30 -3.02 -0.04 -21.77 16 12 N -0.66 -22.34 5.39 -308.66 -1.66 -24.00 16 13 C 0.37 16.33 7.41 132.75 0.98 17.31 16 14 C -0.33 -15.38 7.01 22.98 0.16 -15.21 16 15 C 0.11 5.61 5.23 -21.11 -0.11 5.50 16 16 C -0.47 -25.15 9.66 23.52 0.23 -24.92 16 17 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 18 C 0.05 2.52 5.45 85.29 0.47 2.99 16 19 N -0.83 -42.65 13.92 21.84 0.30 -42.35 16 20 Si 0.97 39.67 24.42 68.60 1.68 41.34 16 21 H -0.24 -8.69 6.70 99.48 0.67 -8.02 16 22 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.26 -11.31 6.66 99.48 0.66 -10.65 16 24 C -0.29 -13.53 9.90 22.84 0.23 -13.30 16 25 C 0.13 5.78 11.15 84.50 0.94 6.72 16 26 N -0.58 -27.38 7.87 -193.54 -1.52 -28.90 16 27 C -0.10 -2.48 9.36 22.27 0.21 -2.27 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 32 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 33 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.13 1.99 8.09 -2.38 -0.02 1.97 16 37 H 0.13 1.99 8.08 -2.39 -0.02 1.97 16 38 H 0.43 10.82 8.69 -92.71 -0.81 10.01 16 39 H 0.12 5.06 4.23 -2.91 -0.01 5.05 16 40 H 0.30 13.64 8.29 -92.71 -0.77 12.87 16 41 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 42 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 43 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -72.29 366.62 3.40 -68.89 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.15 Total: 32.19 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 6.09 Total: -15.46 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -2.88 Total: -95.26 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.64 Total: -31.70 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.68 Total: 41.34 kcal Total: -72.29 3.40 -68.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547959259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.369 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds