Wall clock time and date at job start Tue Mar 31 2020 14:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46738 * 199.59148 * 3 2 1 5 5 N 1.46498 * 109.46956 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99715 * 270.00282 * 5 4 3 7 7 C 1.50705 * 109.46981 * 270.00146 * 6 5 4 8 8 H 1.08004 * 119.99984 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00067 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00410 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00021 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47350 * 59.99671 * 11 9 7 13 13 H 1.48497 * 109.47339 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46936 * 299.99706 * 11 9 7 15 15 C 1.34773 * 120.00293 * 90.00160 * 5 4 3 16 16 O 1.21277 * 119.99929 * 180.02562 * 15 5 4 17 17 C 1.50698 * 119.99631 * 359.97438 * 15 5 4 18 18 N 1.46506 * 109.46908 * 180.02562 * 17 15 5 19 19 C 1.39828 * 120.00007 * 180.02562 * 18 17 15 20 20 C 1.38408 * 120.17662 * 359.97438 * 19 18 17 21 21 C 1.38747 * 120.57576 * 180.02562 * 20 19 18 22 22 C 1.36625 * 120.59247 * 0.02562 * 21 20 19 23 23 C 1.39783 * 119.90096 * 0.02562 * 22 21 20 24 24 C 1.46479 * 133.98085 * 180.26653 * 23 22 21 25 25 C 1.34261 * 107.02425 * 180.11990 * 24 23 22 26 26 N 1.36752 * 109.90706 * 359.62662 * 25 24 23 27 27 H 0.96999 * 125.08785 * 180.28316 * 26 25 24 28 28 C 1.37853 * 109.83699 * 0.24210 * 26 25 24 29 29 H 1.09004 * 109.46819 * 79.59510 * 3 2 1 30 30 H 1.09000 * 109.47354 * 319.59171 * 3 2 1 31 31 H 1.08998 * 109.46515 * 59.99979 * 4 3 2 32 32 H 1.09001 * 109.47034 * 300.00629 * 4 3 2 33 33 H 1.08999 * 109.47660 * 29.99450 * 6 5 4 34 34 H 1.08992 * 109.47772 * 150.00293 * 6 5 4 35 35 H 0.96996 * 120.00256 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47337 * 60.00264 * 17 15 5 37 37 H 1.09002 * 109.47365 * 299.99705 * 17 15 5 38 38 H 0.96999 * 119.99739 * 359.97438 * 18 17 15 39 39 H 1.08004 * 119.70983 * 359.97438 * 20 19 18 40 40 H 1.08008 * 119.70302 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.05018 * 180.02562 * 22 21 20 42 42 H 1.08006 * 126.49091 * 0.02562 * 24 23 22 43 43 H 1.08002 * 125.05100 * 179.89673 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3600 0.4837 5 7 4.5823 1.3609 0.4832 6 6 5.3155 0.9357 1.6781 7 6 5.5662 2.1284 2.5645 8 1 5.2149 3.1055 2.2673 9 6 6.2449 1.9724 3.7545 10 7 6.6731 0.7828 4.1163 11 14 6.5563 3.4510 4.8529 12 1 5.2588 4.0503 5.2558 13 1 7.2993 3.0200 6.0642 14 1 7.3578 4.4579 4.1120 15 6 5.2556 1.7528 -0.6166 16 8 6.4683 1.7531 -0.6172 17 6 4.5013 2.1896 -1.8459 18 7 5.4528 2.5633 -2.8955 19 6 4.9859 3.0053 -4.1372 20 6 3.6258 3.0906 -4.3790 21 6 3.1535 3.5275 -5.6083 22 6 4.0227 3.8806 -6.6015 23 6 5.4009 3.8020 -6.3819 24 6 6.5797 4.0977 -7.1996 25 6 7.6581 3.8242 -6.4481 26 7 7.2662 3.3855 -5.2136 27 1 7.8668 3.1305 -4.4959 28 6 5.8898 3.3606 -5.1412 29 1 2.9714 -0.1848 -1.0108 30 1 2.9717 -0.7817 0.6662 31 1 2.7538 1.5453 1.4944 32 1 2.7535 2.1423 -0.1824 33 1 4.7271 0.1965 2.2216 34 1 6.2680 0.4960 1.3828 35 1 7.1509 0.6732 4.9532 36 1 3.8739 3.0469 -1.6018 37 1 3.8754 1.3699 -2.1986 38 1 6.4065 2.5049 -2.7287 39 1 2.9261 2.8138 -3.6043 40 1 2.0892 3.5883 -5.7818 41 1 3.6454 4.2199 -7.5549 42 1 6.5811 4.4648 -8.2154 43 1 8.6830 3.9381 -6.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548139898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:30 Heat of formation + Delta-G solvation = 56.162817 kcal Electronic energy + Delta-G solvation = -26381.169510 eV Core-core repulsion = 22619.948849 eV Total energy + Delta-G solvation = -3761.220661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23072 -39.61006 -37.42098 -36.92226 -35.53401 -34.95618 -32.98876 -31.09570 -30.95570 -29.59155 -28.60700 -27.73585 -26.06133 -24.14048 -22.95125 -22.27981 -21.51416 -20.40426 -19.10408 -18.30176 -17.64855 -16.80340 -16.58383 -16.22551 -16.12404 -15.52793 -15.29259 -14.87122 -14.77187 -14.50421 -14.33809 -14.05088 -13.82225 -13.66421 -13.23898 -12.99157 -12.88682 -12.56974 -12.51127 -12.32266 -12.17797 -11.85720 -11.63640 -11.54403 -11.38515 -11.14596 -11.08529 -10.97331 -10.70051 -10.35780 -10.28997 -9.84280 -9.30005 -8.80063 -8.55827 -8.20517 -8.03572 -6.96816 -6.17838 -4.23202 1.31989 1.70788 2.66475 2.73392 2.77111 3.02798 3.06181 3.21502 3.24472 3.29504 3.32978 3.67198 4.02105 4.10753 4.33891 4.73722 4.76645 4.91386 4.92369 5.02497 5.04067 5.17598 5.21592 5.22380 5.32285 5.47432 5.49276 5.59546 5.71067 5.73331 5.91774 5.96842 5.98536 6.32199 6.58562 6.73239 6.75740 6.80674 7.01035 7.19278 7.27243 7.36177 7.44750 7.53031 7.73739 7.77320 8.05115 8.07316 8.61680 8.82251 9.42784 10.90276 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.003245 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.421921 B = 8625.334114 C =10586.476082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.114 3.886 5 N -0.590 5.590 6 C 0.245 3.755 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.503 3.497 16 O -0.532 6.532 17 C 0.104 3.896 18 N -0.737 5.737 19 C 0.226 3.774 20 C -0.204 4.204 21 C -0.090 4.090 22 C -0.141 4.141 23 C -0.066 4.066 24 C -0.218 4.218 25 C 0.056 3.944 26 N -0.590 5.590 27 H 0.414 0.586 28 C 0.034 3.966 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.265 0.735 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.405 0.595 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.143 0.857 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 2.710 -18.612 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.012 4.012 5 N -0.322 5.322 6 C 0.127 3.873 7 C -0.571 4.571 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.289 3.711 16 O -0.409 6.409 17 C -0.024 4.024 18 N -0.370 5.370 19 C 0.121 3.879 20 C -0.229 4.229 21 C -0.110 4.110 22 C -0.162 4.162 23 C -0.072 4.072 24 C -0.244 4.244 25 C -0.073 4.073 26 N -0.193 5.193 27 H 0.251 0.749 28 C -0.074 4.074 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.243 0.757 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.161 0.839 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.163 2.507 -18.179 18.817 hybrid contribution 1.276 0.613 1.201 1.857 sum -2.887 3.120 -16.978 17.502 Atomic orbital electron populations 1.81221 1.12994 1.08554 1.09127 1.29037 0.95037 0.93221 0.92945 1.19881 0.81532 1.02396 1.05394 1.21382 0.81839 0.93969 1.04058 1.48171 1.05093 1.64211 1.14686 1.19394 0.92602 0.95672 0.79666 1.21357 1.37103 0.94610 1.04080 0.92375 1.24909 0.95180 0.96068 0.97708 1.69899 1.37957 1.21902 1.23366 0.86564 0.78472 0.82706 0.79742 1.20150 1.21134 1.20192 1.20227 0.88188 0.78451 0.84223 1.90670 1.13764 1.53704 1.82774 1.21194 0.92540 1.01078 0.87602 1.44315 1.08974 1.73387 1.10316 1.16888 0.91668 0.95777 0.83554 1.20250 0.91858 1.11506 0.99308 1.20327 0.99017 0.98984 0.92630 1.19971 0.90686 1.05873 0.99629 1.19002 0.93506 1.02172 0.92501 1.21628 0.90291 1.12129 1.00364 1.21782 0.99469 1.01151 0.84869 1.41718 1.05011 1.58513 1.14045 0.74924 1.17805 0.83066 1.09995 0.96525 0.87535 0.86386 0.88365 0.90429 0.94443 0.93515 0.92508 0.89525 0.89713 0.75740 0.85946 0.86393 0.86719 0.83895 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.24 18.54 42.15 0.78 -5.46 16 2 C 0.22 2.45 15.43 -20.76 -0.32 2.13 16 3 C -0.05 -0.48 6.03 -29.51 -0.18 -0.66 16 4 C 0.11 1.38 5.17 -4.04 -0.02 1.36 16 5 N -0.59 -10.02 2.46 -175.06 -0.43 -10.45 16 6 C 0.25 5.53 5.16 -5.19 -0.03 5.50 16 7 C -0.53 -13.76 9.39 -34.44 -0.32 -14.08 16 8 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 11 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.50 8.58 7.74 -10.99 -0.09 8.49 16 16 O -0.53 -11.38 15.25 5.56 0.08 -11.29 16 17 C 0.10 1.30 3.95 -5.19 -0.02 1.28 16 18 N -0.74 -9.81 5.71 -59.69 -0.34 -10.15 16 19 C 0.23 2.94 6.67 -83.61 -0.56 2.38 16 20 C -0.20 -2.41 9.30 -39.33 -0.37 -2.78 16 21 C -0.09 -0.99 9.97 -39.98 -0.40 -1.39 16 22 C -0.14 -1.62 10.05 -39.59 -0.40 -2.02 16 23 C -0.07 -0.83 6.37 -105.16 -0.67 -1.50 16 24 C -0.22 -2.27 11.08 -37.67 -0.42 -2.69 16 25 C 0.06 0.51 11.82 -16.76 -0.20 0.31 16 26 N -0.59 -6.31 6.08 -10.54 -0.06 -6.37 16 27 H 0.41 3.77 8.87 -40.82 -0.36 3.41 16 28 C 0.03 0.45 7.13 -83.78 -0.60 -0.15 16 29 H 0.11 0.81 7.22 -51.93 -0.37 0.43 16 30 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16 33 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.05 1.21 7.42 -51.93 -0.39 0.83 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 36 H 0.09 0.98 7.21 -51.93 -0.37 0.61 16 37 H 0.09 0.84 6.99 -51.93 -0.36 0.48 16 38 H 0.41 5.77 7.37 -40.82 -0.30 5.47 16 39 H 0.12 1.25 6.71 -52.48 -0.35 0.89 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -33.22 373.75 -8.64 -41.86 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.34 Total: 6.80 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -4.67 Total: -2.19 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.68 Total: -56.56 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.22 -8.64 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548139898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.026 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds