Wall clock time and date at job start Tue Mar 31 2020 14:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46738 * 199.59148 * 3 2 1 5 5 N 1.46498 * 109.46956 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99715 * 270.00282 * 5 4 3 7 7 C 1.50705 * 109.46981 * 270.00146 * 6 5 4 8 8 H 1.08004 * 119.99984 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00067 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00410 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00021 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47350 * 59.99671 * 11 9 7 13 13 H 1.48497 * 109.47339 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46936 * 299.99706 * 11 9 7 15 15 C 1.34773 * 120.00293 * 90.00160 * 5 4 3 16 16 O 1.21277 * 119.99929 * 180.02562 * 15 5 4 17 17 C 1.50698 * 119.99631 * 359.97438 * 15 5 4 18 18 N 1.46506 * 109.46908 * 180.02562 * 17 15 5 19 19 C 1.39828 * 120.00007 * 180.02562 * 18 17 15 20 20 C 1.38408 * 120.17662 * 359.97438 * 19 18 17 21 21 C 1.38747 * 120.57576 * 180.02562 * 20 19 18 22 22 C 1.36625 * 120.59247 * 0.02562 * 21 20 19 23 23 C 1.39783 * 119.90096 * 0.02562 * 22 21 20 24 24 C 1.46479 * 133.98085 * 180.26653 * 23 22 21 25 25 C 1.34261 * 107.02425 * 180.11990 * 24 23 22 26 26 N 1.36752 * 109.90706 * 359.62662 * 25 24 23 27 27 H 0.96999 * 125.08785 * 180.28316 * 26 25 24 28 28 C 1.37853 * 109.83699 * 0.24210 * 26 25 24 29 29 H 1.09004 * 109.46819 * 79.59510 * 3 2 1 30 30 H 1.09000 * 109.47354 * 319.59171 * 3 2 1 31 31 H 1.08998 * 109.46515 * 59.99979 * 4 3 2 32 32 H 1.09001 * 109.47034 * 300.00629 * 4 3 2 33 33 H 1.08999 * 109.47660 * 29.99450 * 6 5 4 34 34 H 1.08992 * 109.47772 * 150.00293 * 6 5 4 35 35 H 0.96996 * 120.00256 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47337 * 60.00264 * 17 15 5 37 37 H 1.09002 * 109.47365 * 299.99705 * 17 15 5 38 38 H 0.96999 * 119.99739 * 359.97438 * 18 17 15 39 39 H 1.08004 * 119.70983 * 359.97438 * 20 19 18 40 40 H 1.08008 * 119.70302 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.05018 * 180.02562 * 22 21 20 42 42 H 1.08006 * 126.49091 * 0.02562 * 24 23 22 43 43 H 1.08002 * 125.05100 * 179.89673 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3600 0.4837 5 7 4.5823 1.3609 0.4832 6 6 5.3155 0.9357 1.6781 7 6 5.5662 2.1284 2.5645 8 1 5.2149 3.1055 2.2673 9 6 6.2449 1.9724 3.7545 10 7 6.6731 0.7828 4.1163 11 14 6.5563 3.4510 4.8529 12 1 5.2588 4.0503 5.2558 13 1 7.2993 3.0200 6.0642 14 1 7.3578 4.4579 4.1120 15 6 5.2556 1.7528 -0.6166 16 8 6.4683 1.7531 -0.6172 17 6 4.5013 2.1896 -1.8459 18 7 5.4528 2.5633 -2.8955 19 6 4.9859 3.0053 -4.1372 20 6 3.6258 3.0906 -4.3790 21 6 3.1535 3.5275 -5.6083 22 6 4.0227 3.8806 -6.6015 23 6 5.4009 3.8020 -6.3819 24 6 6.5797 4.0977 -7.1996 25 6 7.6581 3.8242 -6.4481 26 7 7.2662 3.3855 -5.2136 27 1 7.8668 3.1305 -4.4959 28 6 5.8898 3.3606 -5.1412 29 1 2.9714 -0.1848 -1.0108 30 1 2.9717 -0.7817 0.6662 31 1 2.7538 1.5453 1.4944 32 1 2.7535 2.1423 -0.1824 33 1 4.7271 0.1965 2.2216 34 1 6.2680 0.4960 1.3828 35 1 7.1509 0.6732 4.9532 36 1 3.8739 3.0469 -1.6018 37 1 3.8754 1.3699 -2.1986 38 1 6.4065 2.5049 -2.7287 39 1 2.9261 2.8138 -3.6043 40 1 2.0892 3.5883 -5.7818 41 1 3.6454 4.2199 -7.5549 42 1 6.5811 4.4648 -8.2154 43 1 8.6830 3.9381 -6.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548139898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:30 Heat of formation + Delta-G solvation = 35.469493 kcal Electronic energy + Delta-G solvation = -26382.066840 eV Core-core repulsion = 22619.948849 eV Total energy + Delta-G solvation = -3762.117991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03951 -40.92462 -38.32803 -37.96343 -36.79264 -35.95203 -34.86693 -32.23533 -31.93912 -30.53726 -29.63285 -29.00247 -27.32204 -25.34332 -24.51418 -23.11927 -22.43186 -21.21591 -20.24164 -19.35702 -18.77491 -18.33603 -17.87802 -17.36209 -17.09653 -16.59026 -16.49769 -16.28197 -15.75396 -15.51993 -15.42437 -15.07786 -14.83129 -14.58499 -14.50036 -14.17504 -13.88535 -13.74385 -13.61081 -13.53690 -13.26771 -13.18571 -12.94648 -12.72587 -12.54335 -12.52242 -12.35045 -12.18767 -11.95532 -11.88752 -11.71472 -11.23320 -10.73074 -10.60113 -9.64430 -9.54483 -9.02782 -8.20225 -7.84473 -6.32297 0.48933 0.85217 1.39585 1.41532 1.48277 1.63048 1.78532 1.86821 1.96514 2.05803 2.32395 2.40812 2.63353 3.09122 3.13888 3.15996 3.64334 3.98817 4.02974 4.10747 4.19157 4.23023 4.34029 4.39610 4.45035 4.61758 4.70079 4.83210 4.84082 4.92603 5.04876 5.07885 5.13854 5.19527 5.31186 5.50832 5.56160 5.77589 5.83430 5.95672 5.97241 6.09878 6.15338 6.42845 6.62205 6.65574 6.69703 6.77267 6.80379 7.26250 7.41726 8.86366 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010761 B = 0.003245 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.421921 B = 8625.334114 C =10586.476082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.245 3.755 3 C -0.038 4.038 4 C 0.109 3.891 5 N -0.590 5.590 6 C 0.260 3.740 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.263 1.263 13 H -0.283 1.283 14 H -0.280 1.280 15 C 0.499 3.501 16 O -0.584 6.584 17 C 0.116 3.884 18 N -0.745 5.745 19 C 0.209 3.791 20 C -0.209 4.209 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.089 4.089 24 C -0.237 4.237 25 C 0.061 3.939 26 N -0.594 5.594 27 H 0.418 0.582 28 C 0.008 3.992 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.006 0.994 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.398 0.602 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.162 0.838 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 3.592 -19.977 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.015 4.015 5 N -0.320 5.320 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.186 4.186 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.206 1.206 15 C 0.287 3.713 16 O -0.464 6.464 17 C -0.011 4.011 18 N -0.378 5.378 19 C 0.105 3.895 20 C -0.235 4.235 21 C -0.115 4.115 22 C -0.172 4.172 23 C -0.095 4.095 24 C -0.262 4.262 25 C -0.066 4.066 26 N -0.197 5.197 27 H 0.256 0.744 28 C -0.100 4.100 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.056 0.944 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.233 0.767 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.180 0.820 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.373 3.398 -19.568 20.575 hybrid contribution 1.668 0.349 1.554 2.306 sum -3.706 3.747 -18.013 18.769 Atomic orbital electron populations 1.81266 1.14415 1.09997 1.10883 1.29102 0.94897 0.91803 0.91395 1.19830 0.80190 1.00806 1.07122 1.21617 0.78666 0.96572 1.04694 1.48004 1.06961 1.63917 1.13139 1.18835 0.91561 0.94462 0.81220 1.21723 1.36494 0.95367 1.04506 0.92774 1.25688 0.95233 0.98428 0.99275 1.70003 1.38945 1.23647 1.23855 0.85649 0.78688 0.79562 0.78005 1.18798 1.20817 1.20597 1.21024 0.87807 0.77208 0.85220 1.90648 1.16307 1.55685 1.83791 1.21234 0.91929 1.02801 0.85158 1.44329 1.08636 1.74133 1.10699 1.17083 0.92356 0.96655 0.83386 1.20554 0.91655 1.11124 1.00124 1.20645 1.00241 0.98349 0.92227 1.20293 0.90597 1.05683 1.00584 1.19448 0.94608 1.02527 0.92953 1.21971 0.89945 1.12907 1.01385 1.22415 1.00995 0.99327 0.83913 1.41859 1.04564 1.58487 1.14777 0.74448 1.18104 0.84078 1.10860 0.96998 0.84562 0.86098 0.89406 0.87185 0.94435 0.97635 0.92544 0.87607 0.86322 0.76678 0.84151 0.84050 0.85151 0.82042 0.77994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.91 18.54 20.01 0.37 -12.54 16 2 C 0.25 4.95 15.43 89.44 1.38 6.34 16 3 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 4 C 0.11 2.39 5.17 86.38 0.45 2.83 16 5 N -0.59 -19.55 2.46 -826.16 -2.03 -21.58 16 6 C 0.26 11.96 5.16 85.63 0.44 12.40 16 7 C -0.54 -28.30 9.39 25.60 0.24 -28.06 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.01 0.71 5.46 84.65 0.46 1.17 16 10 N -0.92 -52.44 13.29 21.44 0.28 -52.16 16 11 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 C 0.50 16.66 7.74 87.66 0.68 17.34 16 16 O -0.58 -25.58 15.25 -3.02 -0.05 -25.62 16 17 C 0.12 2.62 3.95 85.63 0.34 2.96 16 18 N -0.75 -19.06 5.71 -342.75 -1.96 -21.02 16 19 C 0.21 5.18 6.67 38.25 0.26 5.43 16 20 C -0.21 -4.47 9.30 22.43 0.21 -4.26 16 21 C -0.10 -1.89 9.97 22.01 0.22 -1.67 16 22 C -0.15 -3.24 10.05 22.27 0.22 -3.02 16 23 C -0.09 -2.15 6.37 -20.21 -0.13 -2.28 16 24 C -0.24 -4.59 11.08 23.51 0.26 -4.33 16 25 C 0.06 1.03 11.82 83.02 0.98 2.01 16 26 N -0.59 -12.33 6.08 -187.26 -1.14 -13.47 16 27 H 0.42 7.59 8.87 -92.71 -0.82 6.77 16 28 C 0.01 0.20 7.13 39.09 0.28 0.48 16 29 H 0.14 1.49 7.22 -2.39 -0.02 1.47 16 30 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.16 8.07 -2.39 -0.02 2.14 16 32 H 0.11 1.73 6.44 -2.39 -0.02 1.72 16 33 H 0.04 1.71 8.07 -2.39 -0.02 1.69 16 34 H 0.01 0.30 7.42 -2.39 -0.02 0.28 16 35 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.11 2.03 7.21 -2.39 -0.02 2.01 16 37 H 0.12 1.88 6.99 -2.39 -0.02 1.86 16 38 H 0.40 11.42 7.37 -92.71 -0.68 10.73 16 39 H 0.14 2.34 6.71 -2.91 -0.02 2.32 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -74.76 373.75 3.54 -71.22 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.43 Total: 23.54 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.46 Total: 6.89 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -4.47 Total: -120.77 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.76 3.54 -71.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548139898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.688 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds