Wall clock time and date at job start Tue Mar 31 2020 14:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48531 * 110.99760 * 2 1 4 4 C 1.54937 * 103.22743 * 159.72340 * 3 2 1 5 5 C 1.54597 * 102.91853 * 322.58411 * 4 3 2 6 6 H 1.08998 * 110.30473 * 262.93905 * 5 4 3 7 7 C 1.53003 * 110.30405 * 140.87611 * 5 4 3 8 8 N 1.46898 * 109.47553 * 66.45472 * 7 5 4 9 9 C 1.46895 * 111.00163 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47151 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99905 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99929 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99917 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47302 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47059 * 120.00296 * 14 12 10 17 17 H 1.48507 * 109.47151 * 240.00132 * 14 12 10 18 18 C 1.47896 * 111.00405 * 117.39568 * 2 1 3 19 19 H 1.09008 * 110.08091 * 333.59943 * 18 2 1 20 20 C 1.50698 * 109.91766 * 94.80066 * 18 2 1 21 21 C 1.38260 * 119.97758 * 217.58981 * 20 18 2 22 22 C 1.38216 * 120.06465 * 179.97438 * 21 20 18 23 23 C 1.38328 * 120.00996 * 0.04959 * 22 21 20 24 24 Cl 1.73598 * 120.02495 * 179.97438 * 23 22 21 25 25 C 1.38549 * 119.95030 * 359.97388 * 23 22 21 26 26 F 1.35099 * 120.02876 * 179.97438 * 25 23 22 27 27 C 1.38193 * 119.97406 * 37.31728 * 20 18 2 28 28 H 1.08998 * 109.47389 * 59.87627 * 1 2 3 29 29 H 1.08998 * 109.46699 * 179.87717 * 1 2 3 30 30 H 1.08997 * 109.47057 * 299.87282 * 1 2 3 31 31 H 1.09001 * 110.67185 * 41.28370 * 3 2 1 32 32 H 1.09004 * 110.66470 * 278.15947 * 3 2 1 33 33 H 1.09004 * 110.72418 * 80.94201 * 4 3 2 34 34 H 1.08998 * 110.72552 * 204.22479 * 4 3 2 35 35 H 1.09001 * 109.46963 * 186.45385 * 7 5 4 36 36 H 1.08997 * 109.47093 * 306.44862 * 7 5 4 37 37 H 1.00898 * 110.99961 * 56.03950 * 8 7 5 38 38 H 1.09003 * 109.46860 * 299.99455 * 9 8 7 39 39 H 1.08999 * 109.47277 * 59.99606 * 9 8 7 40 40 H 0.96997 * 119.99547 * 179.97438 * 13 12 10 41 41 H 1.08001 * 119.96706 * 359.97438 * 21 20 18 42 42 H 1.07998 * 119.99679 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.00906 * 0.02562 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1054 1.5930 6 1 3.2155 0.5486 2.5854 7 6 4.4897 -0.8530 1.5381 8 7 5.7098 -0.1411 1.9413 9 6 6.8771 -1.0320 1.8999 10 6 8.1068 -0.2685 2.3194 11 1 8.0290 0.7743 2.5893 12 6 9.3311 -0.9013 2.3586 13 7 9.4257 -2.1714 2.0304 14 14 10.8555 0.0452 2.8779 15 1 10.4837 1.4478 3.1936 16 1 11.4486 -0.5929 4.0805 17 1 11.8463 0.0334 1.7717 18 6 1.9992 -0.6353 1.2258 19 1 1.2772 -0.5431 2.0374 20 6 2.2939 -2.0898 0.9640 21 6 2.0439 -3.0326 1.9439 22 6 2.3130 -4.3672 1.7054 23 6 2.8339 -4.7608 0.4859 24 17 3.1727 -6.4368 0.1863 25 6 3.0851 -3.8164 -0.4962 26 9 3.5943 -4.1990 -1.6876 27 6 2.8085 -2.4810 -0.2574 28 1 -0.3634 0.5157 -0.8888 29 1 -0.3633 -1.0277 -0.0022 30 1 -0.3633 0.5118 0.8911 31 1 1.4237 2.0205 0.6729 32 1 2.0040 1.7977 -1.0096 33 1 4.1115 0.8836 -0.2789 34 1 3.8123 2.1352 0.9715 35 1 4.3156 -1.6883 2.2164 36 1 4.6073 -1.2287 0.5217 37 1 5.6020 0.2721 2.8554 38 1 6.7197 -1.8688 2.5805 39 1 7.0110 -1.4085 0.8858 40 1 10.2872 -2.6164 2.0577 41 1 1.6379 -2.7260 2.8965 42 1 2.1170 -5.1028 2.4715 43 1 2.9998 -1.7445 -1.0238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566112936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:53 Heat of formation + Delta-G solvation = -19.803575 kcal Electronic energy + Delta-G solvation = -25897.044297 eV Core-core repulsion = 22110.176675 eV Total energy + Delta-G solvation = -3786.867622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.84413 -40.42299 -38.24928 -36.49036 -35.43362 -32.98013 -31.84051 -31.50320 -30.72700 -28.33436 -26.97795 -25.45532 -23.66841 -22.99773 -22.50150 -21.43556 -20.87932 -19.59205 -17.47937 -16.75552 -16.48028 -16.27814 -15.93872 -15.63379 -15.41658 -14.69369 -14.47194 -14.31762 -13.99109 -13.77673 -13.60483 -13.53893 -13.22933 -12.87800 -12.63746 -12.25394 -12.12182 -12.08802 -11.79116 -11.55135 -11.43262 -11.30652 -11.15936 -10.94296 -10.91650 -10.87920 -10.59057 -10.45157 -10.32967 -9.84909 -9.13787 -8.90320 -8.66200 -8.58482 -8.45555 -7.26689 -6.00780 -4.03053 0.91983 1.10625 2.00638 3.31917 3.36478 3.39204 3.43777 3.79680 4.07290 4.40648 4.48047 4.64005 4.65350 4.83698 4.89200 5.02463 5.15884 5.21712 5.23023 5.31081 5.35031 5.46635 5.53181 5.60494 5.64618 5.68122 5.76944 5.86255 5.90741 5.96771 6.01973 6.12784 6.27153 6.32098 6.42384 6.47773 6.68285 6.80004 6.88624 7.28186 7.44509 7.80173 8.15029 8.40225 8.62909 9.06506 9.61902 11.10256 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.004295 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.466962 B = 6517.577678 C = 8781.506590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.031 3.969 4 C -0.103 4.103 5 C -0.087 4.087 6 H 0.076 0.924 7 C 0.067 3.933 8 N -0.687 5.687 9 C 0.196 3.804 10 C -0.513 4.513 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.108 3.892 19 H 0.066 0.934 20 C -0.027 4.027 21 C -0.120 4.120 22 C -0.084 4.084 23 C -0.076 4.076 24 Cl -0.058 7.058 25 C 0.108 3.892 26 F -0.128 7.128 27 C -0.107 4.107 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.325 0.675 38 H -0.016 1.016 39 H 0.026 0.974 40 H 0.261 0.739 41 H 0.134 0.866 42 H 0.140 0.860 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.339 0.098 -2.091 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.239 5.239 3 C -0.096 4.096 4 C -0.141 4.141 5 C -0.107 4.107 6 H 0.095 0.905 7 C -0.063 4.063 8 N -0.317 5.317 9 C 0.069 3.931 10 C -0.552 4.552 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.001 4.001 19 H 0.084 0.916 20 C -0.028 4.028 21 C -0.138 4.138 22 C -0.103 4.103 23 C -0.104 4.104 24 Cl -0.029 7.029 25 C 0.088 3.912 26 F -0.106 7.106 27 C -0.126 4.126 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.002 0.998 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.886 -0.240 -3.297 21.146 hybrid contribution 0.599 -0.117 1.559 1.675 sum -20.286 -0.357 -1.737 20.364 Atomic orbital electron populations 1.22506 0.87828 1.02100 1.00718 1.64561 1.07926 1.15471 1.35932 1.23337 0.96130 0.88883 1.01256 1.22432 0.94856 0.98402 0.98435 1.22041 0.93009 0.96089 0.99523 0.90527 1.22136 0.89696 0.93784 1.00670 1.60655 1.02621 1.35820 1.32636 1.19515 0.86557 0.90440 0.96546 1.21212 0.92012 0.97183 1.44786 0.91956 1.24994 0.99131 0.94902 0.95553 1.69982 1.24903 1.09938 1.48750 0.86454 0.82878 0.80028 0.78111 1.19677 1.21136 1.21003 1.21371 0.96908 0.90312 0.91547 0.91615 1.19529 0.95791 0.94822 0.92680 1.20982 1.01525 0.91780 0.99549 1.20836 0.98053 0.96722 0.94670 1.20975 1.07228 0.85783 0.96420 1.98376 1.93921 1.14538 1.96060 1.17450 0.99550 0.92538 0.81691 1.91538 1.84415 1.91701 1.42956 1.20982 0.99527 0.93085 0.99053 0.91198 0.91422 0.95406 0.93826 0.89890 0.89895 0.90582 0.96249 0.91190 0.85873 0.99786 0.95548 0.92979 0.84826 0.84215 0.83008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.41 60.07 0.57 0.71 16 2 N -0.52 -5.37 4.35 -232.17 -1.01 -6.38 16 3 C 0.03 0.31 6.56 -1.90 -0.01 0.30 16 4 C -0.10 -1.27 6.41 -24.87 -0.16 -1.43 16 5 C -0.09 -1.12 3.18 -89.27 -0.28 -1.40 16 6 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 7 C 0.07 1.14 3.76 -3.82 -0.01 1.13 16 8 N -0.69 -14.29 6.29 -115.06 -0.72 -15.01 16 9 C 0.20 5.17 5.44 -4.98 -0.03 5.15 16 10 C -0.51 -14.58 9.32 -34.44 -0.32 -14.90 16 11 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 14 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C 0.11 1.18 2.67 -67.80 -0.18 1.00 16 19 H 0.07 0.64 7.60 -51.92 -0.39 0.24 16 20 C -0.03 -0.33 3.30 -104.63 -0.35 -0.67 16 21 C -0.12 -1.32 9.17 -39.58 -0.36 -1.68 16 22 C -0.08 -0.98 9.83 -39.56 -0.39 -1.37 16 23 C -0.08 -1.05 6.33 -39.43 -0.25 -1.30 16 24 Cl -0.06 -0.77 28.62 -51.86 -1.48 -2.26 16 25 C 0.11 1.59 7.28 -39.39 -0.29 1.30 16 26 F -0.13 -2.03 16.84 2.25 0.04 -1.99 16 27 C -0.11 -1.47 7.32 -39.52 -0.29 -1.76 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.21 8.00 -51.93 -0.42 -0.20 16 31 H 0.04 0.39 8.00 -51.93 -0.42 -0.02 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.20 7.81 -51.93 -0.41 0.79 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.02 0.35 6.96 -51.93 -0.36 -0.02 16 36 H 0.07 1.29 6.12 -51.93 -0.32 0.97 16 37 H 0.33 6.43 8.72 -39.29 -0.34 6.09 16 38 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 1.15 8.05 -52.49 -0.42 0.73 16 42 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.15 2.10 7.65 -52.49 -0.40 1.70 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -30.68 365.74 -10.81 -41.48 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.40 Total: 1.73 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.45 Total: -13.43 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -1.00 Total: -47.84 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.68 -10.81 -41.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566112936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.681 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds