Wall clock time and date at job start Tue Mar 31 2020 14:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48531 * 110.99760 * 2 1 4 4 C 1.54937 * 103.22743 * 159.72340 * 3 2 1 5 5 C 1.54597 * 102.91853 * 322.58411 * 4 3 2 6 6 H 1.08998 * 110.30473 * 262.93905 * 5 4 3 7 7 C 1.53003 * 110.30405 * 140.87611 * 5 4 3 8 8 N 1.46898 * 109.47553 * 66.45472 * 7 5 4 9 9 C 1.46895 * 111.00163 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47151 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99905 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00062 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99929 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99917 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47302 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47059 * 120.00296 * 14 12 10 17 17 H 1.48507 * 109.47151 * 240.00132 * 14 12 10 18 18 C 1.47896 * 111.00405 * 117.39568 * 2 1 3 19 19 H 1.09008 * 110.08091 * 333.59943 * 18 2 1 20 20 C 1.50698 * 109.91766 * 94.80066 * 18 2 1 21 21 C 1.38260 * 119.97758 * 217.58981 * 20 18 2 22 22 C 1.38216 * 120.06465 * 179.97438 * 21 20 18 23 23 C 1.38328 * 120.00996 * 0.04959 * 22 21 20 24 24 Cl 1.73598 * 120.02495 * 179.97438 * 23 22 21 25 25 C 1.38549 * 119.95030 * 359.97388 * 23 22 21 26 26 F 1.35099 * 120.02876 * 179.97438 * 25 23 22 27 27 C 1.38193 * 119.97406 * 37.31728 * 20 18 2 28 28 H 1.08998 * 109.47389 * 59.87627 * 1 2 3 29 29 H 1.08998 * 109.46699 * 179.87717 * 1 2 3 30 30 H 1.08997 * 109.47057 * 299.87282 * 1 2 3 31 31 H 1.09001 * 110.67185 * 41.28370 * 3 2 1 32 32 H 1.09004 * 110.66470 * 278.15947 * 3 2 1 33 33 H 1.09004 * 110.72418 * 80.94201 * 4 3 2 34 34 H 1.08998 * 110.72552 * 204.22479 * 4 3 2 35 35 H 1.09001 * 109.46963 * 186.45385 * 7 5 4 36 36 H 1.08997 * 109.47093 * 306.44862 * 7 5 4 37 37 H 1.00898 * 110.99961 * 56.03950 * 8 7 5 38 38 H 1.09003 * 109.46860 * 299.99455 * 9 8 7 39 39 H 1.08999 * 109.47277 * 59.99606 * 9 8 7 40 40 H 0.96997 * 119.99547 * 179.97438 * 13 12 10 41 41 H 1.08001 * 119.96706 * 359.97438 * 21 20 18 42 42 H 1.07998 * 119.99679 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.00906 * 0.02562 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1054 1.5930 6 1 3.2155 0.5486 2.5854 7 6 4.4897 -0.8530 1.5381 8 7 5.7098 -0.1411 1.9413 9 6 6.8771 -1.0320 1.8999 10 6 8.1068 -0.2685 2.3194 11 1 8.0290 0.7743 2.5893 12 6 9.3311 -0.9013 2.3586 13 7 9.4257 -2.1714 2.0304 14 14 10.8555 0.0452 2.8779 15 1 10.4837 1.4478 3.1936 16 1 11.4486 -0.5929 4.0805 17 1 11.8463 0.0334 1.7717 18 6 1.9992 -0.6353 1.2258 19 1 1.2772 -0.5431 2.0374 20 6 2.2939 -2.0898 0.9640 21 6 2.0439 -3.0326 1.9439 22 6 2.3130 -4.3672 1.7054 23 6 2.8339 -4.7608 0.4859 24 17 3.1727 -6.4368 0.1863 25 6 3.0851 -3.8164 -0.4962 26 9 3.5943 -4.1990 -1.6876 27 6 2.8085 -2.4810 -0.2574 28 1 -0.3634 0.5157 -0.8888 29 1 -0.3633 -1.0277 -0.0022 30 1 -0.3633 0.5118 0.8911 31 1 1.4237 2.0205 0.6729 32 1 2.0040 1.7977 -1.0096 33 1 4.1115 0.8836 -0.2789 34 1 3.8123 2.1352 0.9715 35 1 4.3156 -1.6883 2.2164 36 1 4.6073 -1.2287 0.5217 37 1 5.6020 0.2721 2.8554 38 1 6.7197 -1.8688 2.5805 39 1 7.0110 -1.4085 0.8858 40 1 10.2872 -2.6164 2.0577 41 1 1.6379 -2.7260 2.8965 42 1 2.1170 -5.1028 2.4715 43 1 2.9998 -1.7445 -1.0238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566112936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:52 Heat of formation + Delta-G solvation = -38.692103 kcal Electronic energy + Delta-G solvation = -25897.863365 eV Core-core repulsion = 22110.176675 eV Total energy + Delta-G solvation = -3787.686690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 326.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.01955 -41.38771 -39.21160 -37.52910 -37.05934 -34.80178 -33.11403 -32.64066 -31.72373 -29.64640 -28.40645 -26.65916 -24.92459 -24.12505 -23.51276 -23.33345 -21.83432 -20.66329 -18.73545 -18.28196 -17.77519 -17.43044 -16.99370 -16.78849 -16.63593 -16.39967 -16.00062 -15.29747 -15.04861 -15.00346 -14.90090 -14.51730 -14.31157 -14.11419 -13.99732 -13.69195 -13.46895 -13.12442 -13.01913 -12.92484 -12.77535 -12.57919 -12.46461 -12.23076 -12.16948 -12.06250 -11.95168 -11.79845 -11.68940 -11.43535 -11.16547 -10.66889 -9.92393 -9.61490 -9.39451 -9.06266 -8.21971 -6.33734 -0.09684 0.11131 0.96008 1.40931 1.42131 1.55846 2.38467 2.40126 3.00371 3.04153 3.11513 3.37492 3.60251 3.69590 3.85825 3.91583 4.12077 4.15201 4.22840 4.42020 4.44998 4.52980 4.59519 4.62211 4.65024 4.71251 4.84689 4.90242 4.93817 4.97726 5.05059 5.07078 5.09904 5.17682 5.26740 5.28565 5.36416 5.43190 5.62254 5.69523 5.95875 6.02662 6.14779 6.45222 6.75230 6.92314 7.37872 8.89912 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.009283 B = 0.004295 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.466962 B = 6517.577678 C = 8781.506590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.042 3.958 4 C -0.105 4.105 5 C -0.080 4.080 6 H 0.094 0.906 7 C 0.074 3.926 8 N -0.682 5.682 9 C 0.213 3.787 10 C -0.532 4.532 11 H 0.068 0.932 12 C -0.001 4.001 13 N -0.936 5.936 14 Si 0.974 3.026 15 H -0.259 1.259 16 H -0.277 1.277 17 H -0.281 1.281 18 C 0.116 3.884 19 H 0.094 0.906 20 C -0.032 4.032 21 C -0.111 4.111 22 C -0.083 4.083 23 C -0.090 4.090 24 Cl -0.062 7.062 25 C 0.077 3.923 26 F -0.144 7.144 27 C -0.115 4.115 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.015 0.985 36 H 0.048 0.952 37 H 0.335 0.665 38 H -0.044 1.044 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.812 1.966 -0.193 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.256 5.256 3 C -0.085 4.085 4 C -0.143 4.143 5 C -0.099 4.099 6 H 0.112 0.888 7 C -0.055 4.055 8 N -0.312 5.312 9 C 0.085 3.915 10 C -0.570 4.570 11 H 0.086 0.914 12 C -0.199 4.199 13 N -0.577 5.577 14 Si 0.798 3.202 15 H -0.183 1.183 16 H -0.203 1.203 17 H -0.207 1.207 18 C 0.007 3.993 19 H 0.112 0.888 20 C -0.033 4.033 21 C -0.130 4.130 22 C -0.102 4.102 23 C -0.118 4.118 24 Cl -0.033 7.033 25 C 0.058 3.942 26 F -0.122 7.122 27 C -0.134 4.134 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.152 0.848 38 H -0.027 1.027 39 H 0.007 0.993 40 H 0.073 0.927 41 H 0.187 0.813 42 H 0.183 0.817 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.392 1.646 -1.400 22.496 hybrid contribution 1.012 -0.719 0.944 1.560 sum -21.380 0.926 -0.456 21.405 Atomic orbital electron populations 1.22537 0.86204 1.02408 1.01827 1.64531 1.09487 1.15737 1.35806 1.23267 0.94337 0.89021 1.01918 1.22375 0.96258 0.98174 0.97471 1.21978 0.91885 0.95358 1.00709 0.88768 1.22120 0.89797 0.94595 0.99036 1.60489 1.02606 1.34918 1.33212 1.19109 0.88737 0.90231 0.93388 1.21582 0.92977 0.97567 1.44862 0.91368 1.25992 1.02802 0.95808 0.95274 1.70125 1.25970 1.11833 1.49740 0.85273 0.78179 0.79011 0.77759 1.18252 1.20313 1.20666 1.21335 0.96275 0.89026 0.92707 0.88803 1.19790 0.95282 0.96040 0.92159 1.21400 1.00059 0.91115 1.00400 1.21212 0.96943 0.97810 0.94211 1.21202 1.07945 0.85528 0.97114 1.98365 1.94032 1.14708 1.96179 1.17777 1.01170 0.93509 0.81786 1.91483 1.84922 1.91904 1.43932 1.20988 1.00132 0.92425 0.99858 0.90460 0.91547 0.93883 0.91776 0.89436 0.92882 0.90258 0.96709 0.93306 0.84756 1.02650 0.99287 0.92737 0.81345 0.81720 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.41 127.69 1.20 1.45 16 2 N -0.53 -9.91 4.35 -888.45 -3.86 -13.77 16 3 C 0.04 0.73 6.56 86.65 0.57 1.30 16 4 C -0.10 -2.46 6.41 31.80 0.20 -2.26 16 5 C -0.08 -1.91 3.18 -9.92 -0.03 -1.94 16 6 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 7 C 0.07 2.54 3.76 86.30 0.32 2.86 16 8 N -0.68 -28.68 6.29 -517.94 -3.26 -31.93 16 9 C 0.21 11.68 5.44 85.56 0.47 12.15 16 10 C -0.53 -30.56 9.32 25.60 0.24 -30.32 16 11 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 12 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 13 N -0.94 -58.02 13.29 21.45 0.28 -57.74 16 14 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 15 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 C 0.12 2.24 2.67 44.31 0.12 2.36 16 19 H 0.09 1.36 7.60 -2.38 -0.02 1.35 16 20 C -0.03 -0.73 3.30 -19.87 -0.07 -0.79 16 21 C -0.11 -2.19 9.17 22.27 0.20 -1.99 16 22 C -0.08 -1.83 9.83 22.29 0.22 -1.61 16 23 C -0.09 -2.52 6.33 22.37 0.14 -2.37 16 24 Cl -0.06 -1.69 28.62 -2.72 -0.08 -1.77 16 25 C 0.08 2.40 7.28 22.39 0.16 2.56 16 26 F -0.14 -4.92 16.84 44.97 0.76 -4.16 16 27 C -0.11 -3.23 7.32 22.31 0.16 -3.07 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.47 8.00 -2.39 -0.02 0.45 16 31 H 0.06 0.90 8.00 -2.39 -0.02 0.88 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.56 7.81 -2.39 -0.02 1.55 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.01 0.52 6.96 -2.39 -0.02 0.51 16 36 H 0.05 1.89 6.12 -2.39 -0.01 1.88 16 37 H 0.34 13.03 8.72 -89.70 -0.78 12.24 16 38 H -0.04 -2.62 8.14 -2.39 -0.02 -2.64 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.17 2.14 8.05 -2.91 -0.02 2.12 16 42 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 43 H 0.14 4.17 7.65 -2.91 -0.02 4.15 16 Total: -1.00 -68.76 365.74 0.48 -68.28 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.23 Total: 15.66 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.38 Total: -21.27 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -6.84 Total: -103.45 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.76 Total: -4.16 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -68.76 0.48 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566112936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.590 kcal (2) G-P(sol) polarization free energy of solvation -68.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds