Wall clock time and date at job start Tue Mar 31 2020 14:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39904 * 120.63443 * 324.96350 * 3 2 1 5 5 C 1.38232 * 118.61002 * 180.25559 * 4 3 2 6 6 C 1.38527 * 119.27544 * 359.72955 * 5 4 3 7 7 N 1.31834 * 121.26477 * 0.02562 * 6 5 4 8 8 C 1.32379 * 121.86202 * 0.02562 * 7 6 5 9 9 N 1.38402 * 119.87362 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99496 * 304.95538 * 9 8 7 11 11 C 1.53243 * 109.33807 * 187.25121 * 10 9 8 12 12 N 1.47081 * 108.52070 * 306.17596 * 11 10 9 13 13 C 1.34776 * 120.87475 * 231.18501 * 12 11 10 14 14 O 1.21688 * 120.00521 * 5.23354 * 13 12 11 15 15 C 1.46374 * 119.99786 * 185.23612 * 13 12 11 16 16 H 1.08002 * 119.99924 * 354.99201 * 15 13 12 17 17 C 1.40054 * 120.00144 * 174.99663 * 15 13 12 18 18 N 1.30665 * 119.99802 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99790 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46797 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47225 * 299.99712 * 19 17 15 22 22 H 1.48492 * 109.47406 * 60.00138 * 19 17 15 23 23 C 1.47076 * 118.24130 * 51.45522 * 12 11 10 24 24 C 1.46894 * 111.00292 * 69.25677 * 9 8 7 25 25 C 1.51248 * 109.66914 * 179.71244 * 5 4 3 26 26 C 1.54388 * 105.20447 * 17.08599 * 25 5 4 27 27 C 1.51055 * 131.43655 * 359.92706 * 4 3 2 28 28 H 1.07997 * 119.36326 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.49374 * 67.29656 * 10 9 8 30 30 H 1.08995 * 109.49416 * 307.20882 * 10 9 8 31 31 H 1.08989 * 109.62784 * 186.46024 * 11 10 9 32 32 H 1.09003 * 109.62650 * 65.88180 * 11 10 9 33 33 H 0.96999 * 120.00194 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.62542 * 68.25226 * 23 12 11 35 35 H 1.08997 * 109.63244 * 188.83055 * 23 12 11 36 36 H 1.09005 * 109.49335 * 292.71139 * 24 9 8 37 37 H 1.09007 * 109.48936 * 52.78989 * 24 9 8 38 38 H 1.09002 * 110.30062 * 136.02285 * 25 5 4 39 39 H 1.09003 * 110.29808 * 258.05390 * 25 5 4 40 40 H 1.08999 * 110.81961 * 92.07383 * 26 25 5 41 41 H 1.09005 * 110.81740 * 215.41242 * 26 25 5 42 42 H 1.09003 * 110.31214 * 44.35707 * 27 4 3 43 43 H 1.09003 * 110.39431 * 282.22298 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2813 -0.9847 0.6911 5 6 4.6627 -0.9410 0.6675 6 6 5.2966 0.0674 -0.0399 7 7 4.6077 0.9847 -0.6894 8 6 3.2839 0.9888 -0.6980 9 7 2.6021 1.9722 -1.3933 10 6 3.0227 3.3113 -0.9597 11 6 2.1229 4.3634 -1.6168 12 7 2.1373 4.1476 -3.0716 13 6 2.3980 5.1628 -3.9188 14 8 2.7189 6.2525 -3.4824 15 6 2.2951 4.9547 -5.3640 16 1 2.0898 3.9689 -5.7544 17 6 2.4631 6.0340 -6.2407 18 7 2.7111 7.2268 -5.7684 19 14 2.3325 5.7681 -8.0850 20 1 2.5477 7.0587 -8.7875 21 1 3.3627 4.7903 -8.5184 22 1 0.9828 5.2444 -8.4153 23 6 1.8537 2.7960 -3.5775 24 6 2.7698 1.8044 -2.8430 25 6 5.2223 -2.0879 1.4793 26 6 4.0509 -3.0811 1.6380 27 6 2.8168 -2.1608 1.5174 28 1 6.3758 0.1026 -0.0596 29 1 4.0576 3.4813 -1.2564 30 1 2.9377 3.3859 0.1244 31 1 2.5003 5.3605 -1.3907 32 1 1.1047 4.2603 -1.2414 33 1 2.8278 7.9742 -6.3755 34 1 0.8101 2.5453 -3.3870 35 1 2.0530 2.7565 -4.6484 36 1 3.8084 1.9954 -3.1135 37 1 2.5015 0.7861 -3.1247 38 1 6.0487 -2.5597 0.9477 39 1 5.5545 -1.7337 2.4552 40 1 4.0608 -3.8226 0.8391 41 1 4.0831 -3.5652 2.6141 42 1 2.0044 -2.6818 1.0108 43 1 2.4950 -1.8283 2.5043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578905927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:53 Heat of formation + Delta-G solvation = 51.084733 kcal Electronic energy + Delta-G solvation = -27152.323064 eV Core-core repulsion = 23390.882201 eV Total energy + Delta-G solvation = -3761.440863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37242 -39.06548 -37.37602 -36.54528 -35.89605 -33.42661 -32.50785 -32.13414 -30.71568 -29.84000 -28.27585 -26.70527 -25.51667 -24.46386 -23.11986 -22.09096 -21.63440 -20.56178 -18.91420 -18.49266 -17.49222 -17.06057 -16.34608 -16.07900 -15.55129 -15.14228 -14.81492 -14.36238 -14.18982 -14.04771 -13.91594 -13.85805 -13.44130 -13.28791 -13.21367 -13.03588 -12.91283 -12.51459 -12.31543 -12.01357 -11.87929 -11.69344 -11.57457 -11.47350 -11.26079 -11.08055 -10.91382 -10.77678 -10.66706 -10.25438 -10.06603 -9.98177 -9.69049 -9.01371 -8.85670 -8.61182 -7.59783 -7.23348 -6.20121 -4.65321 0.35049 0.78730 2.69380 2.86111 3.15602 3.20606 3.22091 3.37109 3.59836 3.68442 3.98933 4.07242 4.11585 4.27632 4.51705 4.53016 4.56952 4.57485 4.68997 4.91530 5.18416 5.22713 5.26008 5.30509 5.41174 5.44746 5.48168 5.56851 5.60077 5.67337 5.69329 5.80765 5.81143 5.87019 6.02368 6.07812 6.14799 6.41484 6.50649 6.68106 6.96440 7.19468 7.44452 7.46942 7.57115 7.64820 8.11327 8.34190 9.01456 9.42299 10.56838 10.75324 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.002826 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.357614 B = 9907.272348 C =10054.006212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.271 3.729 3 C -0.045 4.045 4 C -0.008 4.008 5 C -0.163 4.163 6 C 0.155 3.845 7 N -0.501 5.501 8 C 0.353 3.647 9 N -0.493 5.493 10 C 0.053 3.947 11 C 0.126 3.874 12 N -0.644 5.644 13 C 0.561 3.439 14 O -0.577 6.577 15 C -0.544 4.544 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.267 1.267 22 H -0.268 1.268 23 C 0.130 3.870 24 C 0.049 3.951 25 C -0.074 4.074 26 C -0.119 4.119 27 C -0.090 4.090 28 H 0.161 0.839 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -21.498 13.854 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.045 4.045 3 C -0.053 4.053 4 C -0.018 4.018 5 C -0.165 4.165 6 C -0.005 4.005 7 N -0.212 5.212 8 C 0.121 3.879 9 N -0.217 5.217 10 C -0.074 4.074 11 C 0.001 3.999 12 N -0.383 5.383 13 C 0.367 3.633 14 O -0.460 6.460 15 C -0.581 4.581 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.731 3.269 20 H -0.206 1.206 21 H -0.192 1.192 22 H -0.192 1.192 23 C 0.005 3.995 24 C -0.078 4.078 25 C -0.111 4.111 26 C -0.156 4.156 27 C -0.127 4.127 28 H 0.178 0.822 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.085 -20.009 13.659 24.568 hybrid contribution 0.737 -0.678 -0.655 1.197 sum 4.822 -20.686 13.003 24.905 Atomic orbital electron populations 1.81200 1.11684 1.07681 1.07839 1.24983 0.91936 0.93634 0.93930 1.16247 0.85859 0.98687 1.04458 1.20794 0.94077 0.93864 0.93098 1.21486 0.94216 0.99374 1.01412 1.22338 1.00437 0.87858 0.89878 1.68093 1.08290 1.25262 1.19530 1.19917 0.86488 0.90424 0.91042 1.59994 1.52855 1.02463 1.06425 1.22570 0.99479 0.86071 0.99297 1.21223 0.97686 0.97970 0.83003 1.48256 1.76493 1.09276 1.04237 1.18236 0.76536 0.81882 0.86635 1.90591 1.52238 1.24831 1.78307 1.20922 1.52136 0.95646 0.89380 0.91009 1.25720 0.92611 0.94575 1.00273 1.69998 1.33904 0.99853 1.35875 0.86452 0.79464 0.78221 0.82757 1.20552 1.19229 1.19234 1.21585 0.96765 0.82172 0.98990 1.22743 1.00813 1.00222 0.83976 1.20971 0.98497 0.92416 0.99244 1.22336 0.93057 0.97186 1.03052 1.21169 0.99303 0.92688 0.99490 0.82218 0.92410 0.90941 0.88993 0.93220 0.92009 0.93032 0.88170 0.92528 0.90824 0.89955 0.89622 0.90465 0.89884 0.89781 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.42 18.54 41.84 0.78 -5.65 16 2 C 0.27 3.77 14.66 -22.47 -0.33 3.44 16 3 C -0.05 -0.55 5.77 -106.47 -0.61 -1.16 16 4 C -0.01 -0.07 6.07 -103.83 -0.63 -0.70 16 5 C -0.16 -1.28 6.18 -104.25 -0.64 -1.92 16 6 C 0.15 1.45 11.17 -17.44 -0.19 1.26 16 7 N -0.50 -6.55 9.74 -12.13 -0.12 -6.67 16 8 C 0.35 4.88 5.29 -155.07 -0.82 4.06 16 9 N -0.49 -7.87 3.97 -172.35 -0.69 -8.56 16 10 C 0.05 0.90 5.32 -3.70 -0.02 0.88 16 11 C 0.13 2.55 6.61 -3.60 -0.02 2.53 16 12 N -0.64 -14.92 3.00 -173.85 -0.52 -15.44 16 13 C 0.56 16.03 7.63 -12.99 -0.10 15.93 16 14 O -0.58 -18.71 14.49 5.20 0.08 -18.64 16 15 C -0.54 -15.21 8.86 -35.63 -0.32 -15.53 16 16 H 0.07 1.82 5.74 -52.49 -0.30 1.51 16 17 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -23.01 11.84 55.55 0.66 -22.35 16 19 Si 0.91 20.05 29.56 -169.99 -5.02 15.03 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C 0.13 2.49 6.50 -3.37 -0.02 2.47 16 24 C 0.05 0.81 5.50 -3.47 -0.02 0.79 16 25 C -0.07 -0.34 6.77 -26.89 -0.18 -0.52 16 26 C -0.12 -0.49 7.08 -25.26 -0.18 -0.67 16 27 C -0.09 -0.56 6.52 -26.97 -0.18 -0.74 16 28 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.06 1.07 7.97 -51.93 -0.41 0.65 16 30 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 31 H 0.09 2.04 7.04 -51.94 -0.37 1.67 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.95 5.46 -51.93 -0.28 1.67 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.06 8.09 -51.92 -0.42 0.64 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -35.68 359.89 -9.35 -45.03 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.57 Total: -0.63 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: -4.36 Total: 12.45 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.11 Total: -58.67 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.08 Total: -18.64 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.68 -9.35 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578905927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.114 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds