Wall clock time and date at job start Tue Mar 31 2020 14:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39904 * 120.63443 * 324.96350 * 3 2 1 5 5 C 1.38232 * 118.61002 * 180.25559 * 4 3 2 6 6 C 1.38527 * 119.27544 * 359.72955 * 5 4 3 7 7 N 1.31834 * 121.26477 * 0.02562 * 6 5 4 8 8 C 1.32379 * 121.86202 * 0.02562 * 7 6 5 9 9 N 1.38402 * 119.87362 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99496 * 304.95538 * 9 8 7 11 11 C 1.53243 * 109.33807 * 187.25121 * 10 9 8 12 12 N 1.47081 * 108.52070 * 306.17596 * 11 10 9 13 13 C 1.34776 * 120.87475 * 231.18501 * 12 11 10 14 14 O 1.21688 * 120.00521 * 5.23354 * 13 12 11 15 15 C 1.46374 * 119.99786 * 185.23612 * 13 12 11 16 16 H 1.08002 * 119.99924 * 354.99201 * 15 13 12 17 17 C 1.40054 * 120.00144 * 174.99663 * 15 13 12 18 18 N 1.30665 * 119.99802 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99790 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46797 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47225 * 299.99712 * 19 17 15 22 22 H 1.48492 * 109.47406 * 60.00138 * 19 17 15 23 23 C 1.47076 * 118.24130 * 51.45522 * 12 11 10 24 24 C 1.46894 * 111.00292 * 69.25677 * 9 8 7 25 25 C 1.51248 * 109.66914 * 179.71244 * 5 4 3 26 26 C 1.54388 * 105.20447 * 17.08599 * 25 5 4 27 27 C 1.51055 * 131.43655 * 359.92706 * 4 3 2 28 28 H 1.07997 * 119.36326 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.49374 * 67.29656 * 10 9 8 30 30 H 1.08995 * 109.49416 * 307.20882 * 10 9 8 31 31 H 1.08989 * 109.62784 * 186.46024 * 11 10 9 32 32 H 1.09003 * 109.62650 * 65.88180 * 11 10 9 33 33 H 0.96999 * 120.00194 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.62542 * 68.25226 * 23 12 11 35 35 H 1.08997 * 109.63244 * 188.83055 * 23 12 11 36 36 H 1.09005 * 109.49335 * 292.71139 * 24 9 8 37 37 H 1.09007 * 109.48936 * 52.78989 * 24 9 8 38 38 H 1.09002 * 110.30062 * 136.02285 * 25 5 4 39 39 H 1.09003 * 110.29808 * 258.05390 * 25 5 4 40 40 H 1.08999 * 110.81961 * 92.07383 * 26 25 5 41 41 H 1.09005 * 110.81740 * 215.41242 * 26 25 5 42 42 H 1.09003 * 110.31214 * 44.35707 * 27 4 3 43 43 H 1.09003 * 110.39431 * 282.22298 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2813 -0.9847 0.6911 5 6 4.6627 -0.9410 0.6675 6 6 5.2966 0.0674 -0.0399 7 7 4.6077 0.9847 -0.6894 8 6 3.2839 0.9888 -0.6980 9 7 2.6021 1.9722 -1.3933 10 6 3.0227 3.3113 -0.9597 11 6 2.1229 4.3634 -1.6168 12 7 2.1373 4.1476 -3.0716 13 6 2.3980 5.1628 -3.9188 14 8 2.7189 6.2525 -3.4824 15 6 2.2951 4.9547 -5.3640 16 1 2.0898 3.9689 -5.7544 17 6 2.4631 6.0340 -6.2407 18 7 2.7111 7.2268 -5.7684 19 14 2.3325 5.7681 -8.0850 20 1 2.5477 7.0587 -8.7875 21 1 3.3627 4.7903 -8.5184 22 1 0.9828 5.2444 -8.4153 23 6 1.8537 2.7960 -3.5775 24 6 2.7698 1.8044 -2.8430 25 6 5.2223 -2.0879 1.4793 26 6 4.0509 -3.0811 1.6380 27 6 2.8168 -2.1608 1.5174 28 1 6.3758 0.1026 -0.0596 29 1 4.0576 3.4813 -1.2564 30 1 2.9377 3.3859 0.1244 31 1 2.5003 5.3605 -1.3907 32 1 1.1047 4.2603 -1.2414 33 1 2.8278 7.9742 -6.3755 34 1 0.8101 2.5453 -3.3870 35 1 2.0530 2.7565 -4.6484 36 1 3.8084 1.9954 -3.1135 37 1 2.5015 0.7861 -3.1247 38 1 6.0487 -2.5597 0.9477 39 1 5.5545 -1.7337 2.4552 40 1 4.0608 -3.8226 0.8391 41 1 4.0831 -3.5652 2.6141 42 1 2.0044 -2.6818 1.0108 43 1 2.4950 -1.8283 2.5043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578905927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:53 Heat of formation + Delta-G solvation = 27.687363 kcal Electronic energy + Delta-G solvation = -27153.337650 eV Core-core repulsion = 23390.882201 eV Total energy + Delta-G solvation = -3762.455449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.23911 -40.45448 -38.83362 -37.64585 -37.16105 -35.03156 -34.60091 -33.06666 -32.26314 -30.63239 -29.28934 -28.37571 -26.98024 -25.29346 -24.68431 -23.25810 -22.38841 -21.85673 -20.57768 -19.32868 -18.81122 -18.08669 -18.06997 -17.33295 -16.76362 -16.37282 -16.13265 -15.94224 -15.84771 -15.41738 -14.98869 -14.86414 -14.70224 -14.44812 -14.14437 -14.04469 -13.95979 -13.63117 -13.49909 -13.45183 -13.13284 -12.98879 -12.80589 -12.70659 -12.60667 -12.31960 -12.19937 -12.07612 -12.05426 -12.00736 -11.87733 -10.94626 -10.90764 -10.47431 -9.98308 -9.83275 -9.68896 -9.14736 -8.30289 -6.85706 -0.51876 0.00635 1.39542 1.43088 1.54518 1.62940 1.91698 2.20318 2.29954 2.44971 2.67379 2.76944 2.79546 3.35018 3.41678 3.54506 3.57820 3.79934 3.93778 3.98829 4.09710 4.17713 4.22345 4.29986 4.34106 4.36315 4.49223 4.58225 4.65832 4.74146 4.81581 4.84106 4.86172 4.93571 5.04459 5.09613 5.14561 5.24088 5.35748 5.38858 5.41475 5.57615 5.71061 6.05090 6.08836 6.34692 6.43770 6.78029 6.86317 7.37715 8.43742 8.65587 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.002826 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.357614 B = 9907.272348 C =10054.006212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.288 3.712 3 C -0.055 4.055 4 C -0.009 4.009 5 C -0.143 4.143 6 C 0.151 3.849 7 N -0.528 5.528 8 C 0.329 3.671 9 N -0.496 5.496 10 C 0.072 3.928 11 C 0.126 3.874 12 N -0.647 5.647 13 C 0.543 3.457 14 O -0.631 6.631 15 C -0.568 4.568 16 H 0.094 0.906 17 C 0.029 3.971 18 N -0.823 5.823 19 Si 0.996 3.004 20 H -0.275 1.275 21 H -0.252 1.252 22 H -0.254 1.254 23 C 0.129 3.871 24 C 0.062 3.938 25 C -0.071 4.071 26 C -0.112 4.112 27 C -0.093 4.093 28 H 0.189 0.811 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.274 0.726 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.857 -25.344 14.238 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.027 4.027 3 C -0.062 4.062 4 C -0.019 4.019 5 C -0.145 4.145 6 C -0.008 4.008 7 N -0.239 5.239 8 C 0.098 3.902 9 N -0.220 5.220 10 C -0.056 4.056 11 C 0.002 3.998 12 N -0.384 5.384 13 C 0.349 3.651 14 O -0.518 6.518 15 C -0.605 4.605 16 H 0.112 0.888 17 C -0.186 4.186 18 N -0.452 5.452 19 Si 0.815 3.185 20 H -0.200 1.200 21 H -0.176 1.176 22 H -0.178 1.178 23 C 0.005 3.995 24 C -0.065 4.065 25 C -0.109 4.109 26 C -0.149 4.149 27 C -0.130 4.130 28 H 0.206 0.794 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.231 -23.936 14.083 28.260 hybrid contribution 0.452 0.399 -0.612 0.859 sum 5.683 -23.537 13.471 27.708 Atomic orbital electron populations 1.81207 1.12823 1.09129 1.09395 1.25283 0.92254 0.92437 0.92740 1.16276 0.84827 0.99581 1.05559 1.21194 0.94668 0.93695 0.92327 1.21918 0.93665 0.99180 0.99747 1.22844 1.01634 0.87264 0.89077 1.68013 1.07967 1.26982 1.20958 1.19685 0.87082 0.90837 0.92601 1.59871 1.53719 1.02263 1.06115 1.22261 0.97251 0.86176 0.99908 1.21268 0.98751 0.97990 0.81834 1.48128 1.75336 1.09911 1.05017 1.18662 0.76348 0.82134 0.87908 1.90537 1.54671 1.27221 1.79375 1.21456 1.52295 0.97086 0.89615 0.88789 1.27002 0.91250 0.93764 1.06601 1.70180 1.35225 1.01309 1.38482 0.85097 0.80303 0.78565 0.74528 1.19990 1.17599 1.17780 1.21718 0.97917 0.80705 0.99172 1.22541 0.99023 1.00383 0.84538 1.21130 0.99107 0.91023 0.99595 1.22381 0.91249 0.96685 1.04602 1.21334 1.00478 0.91896 0.99260 0.79405 0.94225 0.88926 0.91729 0.92480 0.91571 0.92263 0.88615 0.94011 0.88287 0.87996 0.87816 0.89990 0.87669 0.89968 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.05 18.54 19.00 0.35 -13.70 16 2 C 0.29 7.82 14.66 88.33 1.30 9.11 16 3 C -0.05 -1.26 5.77 -21.06 -0.12 -1.39 16 4 C -0.01 -0.13 6.07 -19.35 -0.12 -0.25 16 5 C -0.14 -1.75 6.18 -19.62 -0.12 -1.87 16 6 C 0.15 2.42 11.17 84.76 0.95 3.37 16 7 N -0.53 -13.17 9.74 -192.29 -1.87 -15.04 16 8 C 0.33 8.82 5.29 133.63 0.71 9.53 16 9 N -0.50 -15.81 3.97 -699.18 -2.78 -18.59 16 10 C 0.07 2.51 5.32 86.38 0.46 2.97 16 11 C 0.13 5.37 6.61 86.35 0.57 5.94 16 12 N -0.65 -31.27 3.00 -822.15 -2.47 -33.74 16 13 C 0.54 32.56 7.63 86.36 0.66 33.22 16 14 O -0.63 -43.47 14.49 -4.31 -0.06 -43.53 16 15 C -0.57 -32.57 8.86 24.83 0.22 -32.35 16 16 H 0.09 4.78 5.74 -2.91 -0.02 4.76 16 17 C 0.03 1.63 5.50 85.31 0.47 2.10 16 18 N -0.82 -51.18 11.84 21.84 0.26 -50.92 16 19 Si 1.00 41.29 29.56 68.60 2.03 43.32 16 20 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 23 C 0.13 5.00 6.50 86.50 0.56 5.56 16 24 C 0.06 2.04 5.50 86.54 0.48 2.51 16 25 C -0.07 -0.30 6.77 30.49 0.21 -0.10 16 26 C -0.11 -0.42 7.08 31.55 0.22 -0.19 16 27 C -0.09 -0.86 6.52 30.44 0.20 -0.66 16 28 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.04 1.52 7.97 -2.39 -0.02 1.50 16 30 H 0.09 2.84 8.09 -2.39 -0.02 2.82 16 31 H 0.06 3.09 7.04 -2.39 -0.02 3.07 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 34 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.10 3.76 5.46 -2.39 -0.01 3.75 16 36 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.10 2.73 8.09 -2.38 -0.02 2.72 16 38 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -83.17 359.89 3.14 -80.03 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.05 Total: 14.68 kcal Atomic # 6 Polarization: 30.87 SS G_CDS: 6.63 Total: 37.50 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -6.51 Total: -132.00 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.06 Total: -43.53 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -83.17 3.14 -80.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578905927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.718 kcal (2) G-P(sol) polarization free energy of solvation -83.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds