Wall clock time and date at job start Tue Mar 31 2020 14:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28440 * 125.18680 * 2 1 4 4 C 1.30894 * 110.94670 * 180.13905 * 3 2 1 5 5 C 1.39644 * 107.86470 * 359.61000 * 4 3 2 6 6 C 1.36595 * 125.19183 * 179.70531 * 2 1 3 7 7 C 1.47216 * 126.88787 * 0.02562 * 6 2 1 8 8 O 1.21809 * 120.00565 * 0.02562 * 7 6 2 9 9 C 1.46361 * 119.99649 * 180.02562 * 7 6 2 10 10 C 1.34994 * 119.99827 * 173.49672 * 9 7 6 11 11 C 1.47144 * 120.00189 * 349.03571 * 10 9 7 12 12 C 1.39915 * 120.14636 * 136.71152 * 11 10 9 13 13 C 1.37876 * 119.93284 * 180.02562 * 12 11 10 14 14 C 1.38348 * 120.23925 * 359.97438 * 13 12 11 15 15 C 1.38873 * 120.29205 * 359.97438 * 14 13 12 16 16 O 1.35908 * 119.96490 * 180.02562 * 15 14 13 17 17 C 1.42904 * 117.00219 * 0.02562 * 16 15 14 18 18 C 1.53000 * 109.47054 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46784 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99801 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99724 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47373 * 60.00156 * 23 21 19 25 25 H 1.48503 * 109.47101 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47586 * 300.00046 * 23 21 19 27 27 C 1.38403 * 120.06551 * 359.76947 * 15 14 13 28 28 H 1.09000 * 109.46807 * 270.29098 * 1 2 3 29 29 H 1.08997 * 109.46873 * 30.29628 * 1 2 3 30 30 H 1.08996 * 109.46829 * 150.29183 * 1 2 3 31 31 H 1.07994 * 126.06730 * 179.87806 * 4 3 2 32 32 H 1.07996 * 127.32860 * 180.18757 * 5 4 3 33 33 H 1.08006 * 119.99972 * 353.49062 * 9 7 6 34 34 H 1.08003 * 119.99907 * 169.04169 * 10 9 7 35 35 H 1.08002 * 120.03612 * 0.02562 * 12 11 10 36 36 H 1.08008 * 119.88376 * 180.02562 * 13 12 11 37 37 H 1.07999 * 119.85109 * 180.02562 * 14 13 12 38 38 H 1.08998 * 109.46896 * 300.00048 * 17 16 15 39 39 H 1.08996 * 109.47009 * 60.00087 * 17 16 15 40 40 H 1.08998 * 109.47098 * 299.99667 * 18 17 16 41 41 H 1.08996 * 109.47351 * 60.00040 * 18 17 16 42 42 H 0.97002 * 119.99346 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.11957 * 180.27355 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4739 0.7277 -0.0030 5 6 3.5622 -0.6659 0.0040 6 6 2.2523 -1.1163 0.0057 7 6 1.7993 -2.5170 0.0124 8 8 0.6082 -2.7720 0.0128 9 6 2.7802 -3.6032 0.0187 10 6 2.3704 -4.8820 0.1572 11 6 0.9798 -5.1714 0.5413 12 6 0.2700 -6.1899 -0.1040 13 6 -1.0330 -6.4569 0.2591 14 6 -1.6420 -5.7216 1.2604 15 6 -0.9461 -4.7093 1.9080 16 8 -1.5506 -3.9914 2.8911 17 6 -2.9020 -4.3328 3.2063 18 6 -3.4095 -3.4234 4.3272 19 6 -4.8348 -3.7830 4.6592 20 1 -5.3291 -4.5807 4.1244 21 6 -5.5075 -3.0944 5.6463 22 7 -4.9054 -2.1235 6.2978 23 14 -7.2745 -3.5397 6.0573 24 1 -7.3379 -4.9556 6.5007 25 1 -7.7667 -2.6580 7.1462 26 1 -8.1234 -3.3598 4.8523 27 6 0.3641 -4.4342 1.5571 28 1 -0.3633 0.0052 1.0277 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 4.3049 1.4175 -0.0055 32 1 4.4607 -1.2651 0.0066 33 1 3.8320 -3.3817 -0.0877 34 1 3.0632 -5.6926 -0.0139 35 1 0.7422 -6.7662 -0.8858 36 1 -1.5801 -7.2436 -0.2393 37 1 -2.6628 -5.9364 1.5401 38 1 -3.5256 -4.2015 2.3220 39 1 -2.9477 -5.3719 3.5321 40 1 -2.7860 -3.5544 5.2116 41 1 -3.3638 -2.3844 4.0010 42 1 -5.3786 -1.6394 6.9925 43 1 0.9076 -3.6500 2.0632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588595183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:36 Heat of formation + Delta-G solvation = 55.184075 kcal Electronic energy + Delta-G solvation = -26479.275119 eV Core-core repulsion = 22685.719265 eV Total energy + Delta-G solvation = -3793.555853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62288 -40.13376 -39.04079 -37.09330 -34.04626 -33.40328 -33.23796 -31.52878 -30.82582 -29.51772 -29.08406 -27.22997 -25.37728 -24.81975 -23.03100 -22.06552 -21.90453 -20.89740 -20.23552 -18.97159 -17.96962 -17.20775 -16.42551 -16.26586 -15.83091 -15.66506 -15.37705 -15.27377 -15.10645 -14.54496 -14.36360 -14.04979 -13.96183 -13.72067 -13.45297 -12.91844 -12.86619 -12.78371 -12.58530 -12.39585 -12.30906 -11.56335 -11.51472 -11.31100 -10.97281 -10.89039 -10.76664 -10.49073 -10.11008 -9.99836 -9.82727 -9.65534 -9.33852 -9.31960 -9.16794 -8.45713 -8.19588 -7.79759 -6.11031 -4.15799 0.22371 1.27586 1.72669 1.95726 2.36162 2.48643 3.14367 3.27834 3.32263 3.33991 3.77474 3.84340 4.00107 4.39550 4.42265 4.60324 4.78020 4.97883 5.02262 5.07145 5.14869 5.17994 5.23807 5.25239 5.36716 5.41390 5.50616 5.55138 5.60936 5.68959 5.83708 6.03083 6.03815 6.09740 6.16927 6.32955 6.50578 6.55671 6.56568 6.61828 6.73359 6.96151 7.35035 7.49927 7.63344 7.81158 7.91587 8.07855 8.23364 8.89520 9.48432 11.00494 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.003063 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.320323 B = 9137.925682 C =11092.657099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.257 5.257 3 N -0.278 5.278 4 C -0.012 4.012 5 C -0.180 4.180 6 C -0.059 4.059 7 C 0.439 3.561 8 O -0.431 6.431 9 C -0.226 4.226 10 C -0.002 4.002 11 C -0.053 4.053 12 C -0.144 4.144 13 C -0.091 4.091 14 C -0.195 4.195 15 C 0.137 3.863 16 O -0.317 6.317 17 C 0.066 3.934 18 C 0.027 3.973 19 C -0.527 4.527 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.094 4.094 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.185 0.815 32 H 0.161 0.839 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.659 -2.978 -16.122 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.045 5.045 3 N -0.113 5.113 4 C -0.186 4.186 5 C -0.209 4.209 6 C -0.185 4.185 7 C 0.318 3.682 8 O -0.305 6.305 9 C -0.245 4.245 10 C -0.021 4.021 11 C -0.054 4.054 12 C -0.162 4.162 13 C -0.110 4.110 14 C -0.214 4.214 15 C 0.091 3.909 16 O -0.230 6.230 17 C -0.008 4.008 18 C -0.010 4.010 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.113 4.113 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.202 0.798 32 H 0.179 0.821 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.144 -1.885 -15.843 23.419 hybrid contribution -0.481 -0.821 0.242 0.981 sum 16.663 -2.706 -15.601 22.987 Atomic orbital electron populations 1.22437 0.72185 1.05819 1.05506 1.45806 1.08087 1.02090 1.48535 1.73214 1.04436 1.14200 1.19412 1.23593 0.93475 0.95126 1.06430 1.22272 0.95674 0.95312 1.07640 1.22299 0.91760 0.90784 1.13620 1.19549 0.89072 0.85988 0.73574 1.90848 1.18557 1.85475 1.35663 1.23143 1.00040 0.92680 1.08625 1.22610 0.94169 0.96305 0.89008 1.18588 0.93317 0.96602 0.96845 1.20946 0.95211 0.98554 1.01494 1.20744 0.94706 0.98919 0.96590 1.21484 1.01288 0.98639 0.99998 1.18950 0.92169 0.90909 0.88913 1.86171 1.30254 1.56594 1.50017 1.23304 0.77351 1.00355 0.99787 1.19103 0.95596 0.94717 0.91633 1.20937 0.97001 1.18711 1.19904 0.92429 1.24989 0.98490 0.94846 0.95829 1.69967 1.37281 1.21807 1.23691 0.86548 0.84301 0.78429 0.78097 1.20086 1.21101 1.20082 1.20274 0.92862 0.99557 0.98561 0.89044 0.88797 0.87261 0.79781 0.82101 0.84121 0.84187 0.86281 0.86095 0.85296 0.93228 0.93221 0.95477 0.95503 0.92647 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.82 59.85 0.65 1.59 16 2 N -0.26 -3.38 3.75 -63.83 -0.24 -3.62 16 3 N -0.28 -3.64 11.90 30.59 0.36 -3.28 16 4 C -0.01 -0.12 12.03 -17.43 -0.21 -0.33 16 5 C -0.18 -1.73 10.48 -38.95 -0.41 -2.14 16 6 C -0.06 -0.71 6.95 -81.99 -0.57 -1.28 16 7 C 0.44 5.34 6.13 -32.67 -0.20 5.14 16 8 O -0.43 -6.45 10.46 5.09 0.05 -6.40 16 9 C -0.23 -2.01 9.57 -37.47 -0.36 -2.37 16 10 C 0.00 -0.02 9.81 -37.12 -0.36 -0.39 16 11 C -0.05 -0.68 4.55 -105.08 -0.48 -1.16 16 12 C -0.14 -1.73 9.79 -39.09 -0.38 -2.12 16 13 C -0.09 -1.20 10.02 -39.67 -0.40 -1.60 16 14 C -0.20 -3.13 9.04 -39.31 -0.36 -3.49 16 15 C 0.14 2.49 6.68 -39.29 -0.26 2.22 16 16 O -0.32 -6.75 10.13 -19.45 -0.20 -6.94 16 17 C 0.07 1.45 4.68 37.16 0.17 1.62 16 18 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 19 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 20 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 23 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.09 -1.50 6.52 -38.94 -0.25 -1.75 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.11 1.32 6.31 -51.93 -0.33 0.99 16 31 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.16 0.96 7.50 -52.49 -0.39 0.57 16 33 H 0.14 0.77 7.28 -52.48 -0.38 0.39 16 34 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.13 2.03 6.28 -52.49 -0.33 1.70 16 38 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 39 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.12 1.92 7.00 -52.48 -0.37 1.55 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -34.02 367.89 -8.26 -42.28 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.52 Total: 0.91 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -3.98 Total: -18.96 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.86 Total: -32.76 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.14 Total: -13.34 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.02 -8.26 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588595183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.464 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds