Wall clock time and date at job start Tue Mar 31 2020 14:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28440 * 125.18680 * 2 1 4 4 C 1.30894 * 110.94670 * 180.13905 * 3 2 1 5 5 C 1.39644 * 107.86470 * 359.61000 * 4 3 2 6 6 C 1.36595 * 125.19183 * 179.70531 * 2 1 3 7 7 C 1.47216 * 126.88787 * 0.02562 * 6 2 1 8 8 O 1.21809 * 120.00565 * 0.02562 * 7 6 2 9 9 C 1.46361 * 119.99649 * 180.02562 * 7 6 2 10 10 C 1.34994 * 119.99827 * 173.49672 * 9 7 6 11 11 C 1.47144 * 120.00189 * 349.03571 * 10 9 7 12 12 C 1.39915 * 120.14636 * 136.71152 * 11 10 9 13 13 C 1.37876 * 119.93284 * 180.02562 * 12 11 10 14 14 C 1.38348 * 120.23925 * 359.97438 * 13 12 11 15 15 C 1.38873 * 120.29205 * 359.97438 * 14 13 12 16 16 O 1.35908 * 119.96490 * 180.02562 * 15 14 13 17 17 C 1.42904 * 117.00219 * 0.02562 * 16 15 14 18 18 C 1.53000 * 109.47054 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46784 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99979 * 0.02562 * 19 18 17 21 21 C 1.37886 * 119.99801 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99724 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47373 * 60.00156 * 23 21 19 25 25 H 1.48503 * 109.47101 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47586 * 300.00046 * 23 21 19 27 27 C 1.38403 * 120.06551 * 359.76947 * 15 14 13 28 28 H 1.09000 * 109.46807 * 270.29098 * 1 2 3 29 29 H 1.08997 * 109.46873 * 30.29628 * 1 2 3 30 30 H 1.08996 * 109.46829 * 150.29183 * 1 2 3 31 31 H 1.07994 * 126.06730 * 179.87806 * 4 3 2 32 32 H 1.07996 * 127.32860 * 180.18757 * 5 4 3 33 33 H 1.08006 * 119.99972 * 353.49062 * 9 7 6 34 34 H 1.08003 * 119.99907 * 169.04169 * 10 9 7 35 35 H 1.08002 * 120.03612 * 0.02562 * 12 11 10 36 36 H 1.08008 * 119.88376 * 180.02562 * 13 12 11 37 37 H 1.07999 * 119.85109 * 180.02562 * 14 13 12 38 38 H 1.08998 * 109.46896 * 300.00048 * 17 16 15 39 39 H 1.08996 * 109.47009 * 60.00087 * 17 16 15 40 40 H 1.08998 * 109.47098 * 299.99667 * 18 17 16 41 41 H 1.08996 * 109.47351 * 60.00040 * 18 17 16 42 42 H 0.97002 * 119.99346 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.11957 * 180.27355 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4739 0.7277 -0.0030 5 6 3.5622 -0.6659 0.0040 6 6 2.2523 -1.1163 0.0057 7 6 1.7993 -2.5170 0.0124 8 8 0.6082 -2.7720 0.0128 9 6 2.7802 -3.6032 0.0187 10 6 2.3704 -4.8820 0.1572 11 6 0.9798 -5.1714 0.5413 12 6 0.2700 -6.1899 -0.1040 13 6 -1.0330 -6.4569 0.2591 14 6 -1.6420 -5.7216 1.2604 15 6 -0.9461 -4.7093 1.9080 16 8 -1.5506 -3.9914 2.8911 17 6 -2.9020 -4.3328 3.2063 18 6 -3.4095 -3.4234 4.3272 19 6 -4.8348 -3.7830 4.6592 20 1 -5.3291 -4.5807 4.1244 21 6 -5.5075 -3.0944 5.6463 22 7 -4.9054 -2.1235 6.2978 23 14 -7.2745 -3.5397 6.0573 24 1 -7.3379 -4.9556 6.5007 25 1 -7.7667 -2.6580 7.1462 26 1 -8.1234 -3.3598 4.8523 27 6 0.3641 -4.4342 1.5571 28 1 -0.3633 0.0052 1.0277 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8926 -0.5093 31 1 4.3049 1.4175 -0.0055 32 1 4.4607 -1.2651 0.0066 33 1 3.8320 -3.3817 -0.0877 34 1 3.0632 -5.6926 -0.0139 35 1 0.7422 -6.7662 -0.8858 36 1 -1.5801 -7.2436 -0.2393 37 1 -2.6628 -5.9364 1.5401 38 1 -3.5256 -4.2015 2.3220 39 1 -2.9477 -5.3719 3.5321 40 1 -2.7860 -3.5544 5.2116 41 1 -3.3638 -2.3844 4.0010 42 1 -5.3786 -1.6394 6.9925 43 1 0.9076 -3.6500 2.0632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588595183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:35 Heat of formation + Delta-G solvation = 34.939450 kcal Electronic energy + Delta-G solvation = -26480.152991 eV Core-core repulsion = 22685.719265 eV Total energy + Delta-G solvation = -3794.433726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47761 -41.25463 -40.20791 -38.36124 -35.54180 -34.86739 -34.15649 -32.63007 -32.40960 -30.80731 -30.25091 -28.12119 -27.07184 -26.03033 -24.17169 -23.35281 -23.01438 -22.26229 -21.24669 -20.01355 -19.09381 -18.48632 -18.00743 -17.31762 -16.98815 -16.97723 -16.88367 -16.61554 -16.27793 -16.02174 -15.40820 -14.91165 -14.82555 -14.51241 -14.50053 -14.36267 -14.30991 -14.15907 -13.83224 -13.63907 -13.35483 -13.18660 -12.95999 -12.64954 -12.60546 -12.48871 -11.99175 -11.79913 -11.67984 -11.61317 -11.44189 -11.03197 -10.77628 -10.65352 -10.25810 -9.99368 -9.19707 -9.06265 -8.30095 -6.44586 -0.63379 0.31584 0.60655 1.04624 1.37882 1.42318 1.50400 1.51110 1.70237 2.24512 2.32623 2.51740 2.88872 2.97279 3.03969 3.61418 3.75286 3.88943 4.03852 4.13614 4.16491 4.18239 4.21289 4.22333 4.32502 4.34602 4.50531 4.52263 4.53484 4.65553 4.68451 4.69791 4.89075 5.02789 5.13717 5.26145 5.28264 5.40717 5.46909 5.53359 5.57997 5.61531 5.65472 5.70094 5.91028 6.03795 6.49460 6.56861 6.69716 7.06482 7.25701 8.82965 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011561 B = 0.003063 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.320323 B = 9137.925682 C =11092.657099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.280 5.280 3 N -0.313 5.313 4 C -0.013 4.013 5 C -0.161 4.161 6 C -0.087 4.087 7 C 0.431 3.569 8 O -0.472 6.472 9 C -0.217 4.217 10 C -0.002 4.002 11 C -0.050 4.050 12 C -0.133 4.133 13 C -0.090 4.090 14 C -0.213 4.213 15 C 0.094 3.906 16 O -0.347 6.347 17 C 0.088 3.912 18 C 0.031 3.969 19 C -0.548 4.548 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.978 3.022 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.263 1.263 27 C -0.105 4.105 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.219 0.781 32 H 0.205 0.795 33 H 0.185 0.815 34 H 0.190 0.810 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.055 0.945 39 H 0.059 0.941 40 H -0.003 1.003 41 H -0.006 1.006 42 H 0.267 0.733 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.822 -5.299 -18.258 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.068 5.068 3 N -0.147 5.147 4 C -0.188 4.188 5 C -0.189 4.189 6 C -0.212 4.212 7 C 0.312 3.688 8 O -0.350 6.350 9 C -0.236 4.236 10 C -0.020 4.020 11 C -0.050 4.050 12 C -0.151 4.151 13 C -0.108 4.108 14 C -0.232 4.232 15 C 0.049 3.951 16 O -0.262 6.262 17 C 0.013 3.987 18 C -0.006 4.006 19 C -0.586 4.586 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.801 3.199 24 H -0.187 1.187 25 H -0.206 1.206 26 H -0.188 1.188 27 C -0.124 4.124 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.236 0.764 32 H 0.222 0.778 33 H 0.202 0.798 34 H 0.207 0.793 35 H 0.181 0.819 36 H 0.170 0.830 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.076 0.924 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.336 -4.220 -18.001 26.753 hybrid contribution -0.938 -0.050 0.810 1.240 sum 18.398 -4.270 -17.192 25.540 Atomic orbital electron populations 1.22304 0.72746 1.06078 1.04412 1.45897 1.08203 1.02690 1.50045 1.73176 1.05881 1.14941 1.20706 1.24314 0.93283 0.96392 1.04787 1.22825 0.95849 0.95271 1.04915 1.22750 0.92919 0.90779 1.14748 1.20237 0.89277 0.86990 0.72278 1.90846 1.20354 1.85960 1.37794 1.23460 1.01137 0.91299 1.07716 1.22988 0.92547 0.97823 0.88655 1.19047 0.95356 0.95519 0.95112 1.21488 0.94562 0.97804 1.01268 1.21155 0.95522 0.98777 0.95329 1.21567 1.01269 0.99033 1.01319 1.19321 0.93428 0.92624 0.89748 1.86073 1.29634 1.58313 1.52187 1.22806 0.78400 0.99294 0.98185 1.18934 0.95537 0.94017 0.92117 1.21362 0.97628 1.19229 1.20388 0.91108 1.26074 1.03746 0.94443 0.95429 1.70123 1.39527 1.23036 1.24333 0.85314 0.77822 0.78630 0.78169 1.18680 1.20646 1.18805 1.20330 0.92199 0.99951 0.99916 0.90857 0.87329 0.88135 0.76450 0.77846 0.79767 0.79254 0.81921 0.82964 0.85878 0.92698 0.92237 0.98500 0.98740 0.92393 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 10.82 127.77 1.38 3.62 16 2 N -0.28 -7.67 3.75 -355.86 -1.33 -9.00 16 3 N -0.31 -8.24 11.90 -57.15 -0.68 -8.92 16 4 C -0.01 -0.24 12.03 85.17 1.02 0.79 16 5 C -0.16 -2.64 10.48 22.68 0.24 -2.40 16 6 C -0.09 -2.06 6.95 40.83 0.28 -1.77 16 7 C 0.43 10.23 6.13 26.75 0.16 10.39 16 8 O -0.47 -14.76 10.46 -4.70 -0.05 -14.81 16 9 C -0.22 -3.10 9.57 23.64 0.23 -2.88 16 10 C 0.00 -0.03 9.81 23.86 0.23 0.20 16 11 C -0.05 -1.19 4.55 -20.16 -0.09 -1.28 16 12 C -0.13 -2.77 9.79 22.59 0.22 -2.55 16 13 C -0.09 -2.19 10.02 22.21 0.22 -1.97 16 14 C -0.21 -6.98 9.04 22.45 0.20 -6.77 16 15 C 0.09 3.60 6.68 22.46 0.15 3.75 16 16 O -0.35 -16.12 10.13 -92.52 -0.94 -17.06 16 17 C 0.09 4.10 4.68 71.98 0.34 4.44 16 18 C 0.03 1.78 5.34 29.85 0.16 1.94 16 19 C -0.55 -31.91 9.11 25.60 0.23 -31.67 16 20 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 21 C 0.00 0.10 5.46 84.66 0.46 0.56 16 22 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 23 Si 0.98 44.27 29.54 68.60 2.03 46.30 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 27 C -0.11 -3.47 6.52 22.68 0.15 -3.32 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.10 2.76 6.31 -2.39 -0.02 2.75 16 31 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.20 1.36 7.50 -2.91 -0.02 1.34 16 33 H 0.19 0.95 7.28 -2.91 -0.02 0.93 16 34 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.12 4.02 6.28 -2.91 -0.02 4.00 16 38 H 0.05 2.45 7.65 -2.39 -0.02 2.44 16 39 H 0.06 2.61 7.66 -2.39 -0.02 2.59 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.10 3.54 7.00 -2.91 -0.02 3.52 16 Total: -1.00 -81.31 367.89 5.93 -75.38 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.02 Total: 14.68 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 5.60 Total: -28.92 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.73 Total: -75.57 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.99 Total: -31.87 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -81.31 5.93 -75.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588595183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.319 kcal (2) G-P(sol) polarization free energy of solvation -81.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds