Wall clock time and date at job start Tue Mar 31 2020 14:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99816 * 2 1 4 4 H 1.48501 * 109.47022 * 270.00256 * 3 2 1 5 5 H 1.48493 * 109.47329 * 29.99882 * 3 2 1 6 6 H 1.48502 * 109.47279 * 150.00339 * 3 2 1 7 7 C 1.37873 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00556 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99737 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99997 * 287.56197 * 10 9 7 12 12 C 1.53003 * 109.47263 * 274.89341 * 11 10 9 13 13 C 1.52997 * 117.50060 * 246.06722 * 12 11 10 14 14 C 1.52996 * 117.49782 * 177.40702 * 12 11 10 15 15 C 1.34780 * 120.00105 * 107.56053 * 10 9 7 16 16 O 1.21538 * 119.99978 * 176.79271 * 15 10 9 17 17 C 1.47967 * 119.99584 * 357.07348 * 15 10 9 18 18 C 1.39916 * 119.78268 * 331.77346 * 17 15 10 19 19 C 1.36707 * 120.48854 * 179.97438 * 18 17 15 20 20 C 1.39121 * 119.87964 * 0.02562 * 19 18 17 21 21 C 1.47766 * 121.68929 * 179.97438 * 20 19 18 22 22 N 1.30658 * 121.44030 * 359.97438 * 21 20 19 23 23 N 1.38367 * 117.12196 * 180.02562 * 21 20 19 24 24 H 0.96999 * 119.94861 * 180.02562 * 23 21 20 25 25 C 1.36072 * 120.10984 * 0.03633 * 23 21 20 26 26 N 1.29651 * 123.36621 * 359.96244 * 25 23 21 27 27 C 1.35926 * 122.18265 * 0.02562 * 26 25 23 28 28 C 1.39108 * 119.77666 * 151.50437 * 17 15 10 29 29 H 0.96997 * 119.99981 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46988 * 60.00695 * 9 7 2 31 31 H 1.08993 * 109.47592 * 300.00229 * 9 7 2 32 32 H 1.08997 * 109.47469 * 34.89842 * 11 10 9 33 33 H 1.09005 * 109.47130 * 154.89491 * 11 10 9 34 34 H 1.09000 * 115.54617 * 31.74041 * 12 11 10 35 35 H 1.09000 * 117.49810 * 0.02562 * 13 12 11 36 36 H 1.09006 * 117.49788 * 145.01954 * 13 12 11 37 37 H 1.09002 * 117.49770 * 214.97851 * 14 12 11 38 38 H 1.08999 * 117.50427 * 0.02562 * 14 12 11 39 39 H 1.08007 * 119.75845 * 359.95762 * 18 17 15 40 40 H 1.08005 * 120.06198 * 180.02562 * 19 18 17 41 41 H 0.97002 * 119.99800 * 179.97438 * 22 21 20 42 42 H 1.07993 * 118.31378 * 179.97438 * 25 23 21 43 43 H 1.08003 * 120.27028 * 0.02562 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 3.8836 -3.3932 1.2088 12 6 5.0822 -3.1268 2.1218 13 6 6.0642 -4.2771 2.3521 14 6 5.1148 -3.8449 3.4723 15 6 4.5561 -3.0935 -1.1139 16 8 5.0139 -4.2192 -1.0968 17 6 4.6149 -2.2895 -2.3547 18 6 3.6459 -1.3091 -2.5942 19 6 3.6867 -0.5576 -3.7355 20 6 4.6978 -0.7676 -4.6677 21 6 4.7799 0.0210 -5.9147 22 7 3.9035 0.9493 -6.1929 23 7 5.8242 -0.2669 -6.7755 24 1 5.9174 0.2261 -7.6056 25 6 6.7206 -1.2407 -6.4596 26 7 6.6597 -1.9394 -5.3692 27 6 5.6823 -1.7525 -4.4432 28 6 5.6366 -2.5097 -3.2728 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8910 32 1 2.9632 -3.1371 1.7335 33 1 3.8636 -4.4478 0.9339 34 1 5.4907 -2.1172 2.0785 35 1 5.8567 -5.2236 1.8529 36 1 7.1190 -4.0243 2.4608 37 1 5.5454 -3.3079 4.3176 38 1 4.2827 -4.5075 3.7104 39 1 2.8596 -1.1448 -1.8721 40 1 2.9354 0.1976 -3.9131 41 1 3.9776 1.4547 -7.0176 42 1 7.5241 -1.4416 -7.1526 43 1 6.3854 -3.2646 -3.0833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597147432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:25 Heat of formation + Delta-G solvation = 88.133249 kcal Electronic energy + Delta-G solvation = -27467.341780 eV Core-core repulsion = 23707.507461 eV Total energy + Delta-G solvation = -3759.834319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92489 -39.64010 -37.51770 -36.71564 -35.55854 -35.02122 -32.59459 -32.44590 -30.75333 -29.72916 -28.32210 -26.85359 -24.46612 -24.09291 -22.62123 -22.07725 -21.47566 -20.79678 -19.65873 -18.89831 -18.22151 -17.79149 -17.11032 -16.16320 -15.83389 -15.48954 -15.09862 -15.00733 -14.60203 -14.46847 -14.25000 -13.94496 -13.55142 -13.36887 -13.21772 -12.61409 -12.57539 -12.28819 -11.96093 -11.81008 -11.66080 -11.43232 -11.25743 -11.00730 -10.88260 -10.44018 -10.41998 -10.23824 -10.11050 -9.77424 -9.66168 -9.60089 -9.49905 -9.18646 -8.81315 -8.65287 -7.83006 -7.61434 -6.33529 -4.37072 0.64356 1.01271 2.28741 2.71625 2.72043 3.15128 3.22856 3.25810 3.50785 3.63958 4.02079 4.13242 4.18672 4.25891 4.29030 4.79694 4.95047 5.07358 5.11479 5.13419 5.23054 5.25750 5.31898 5.57199 5.74250 5.77706 5.84658 5.86027 6.07534 6.12880 6.14298 6.23611 6.31474 6.37011 6.38302 6.39777 6.60438 6.66688 6.70599 6.79062 6.97717 7.11621 7.18898 7.37944 7.90966 7.98714 8.08828 8.32852 8.71234 8.80300 9.24165 10.77541 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.004972 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.686326 B = 5630.370945 C = 7827.123964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.085 3.915 3 Si 0.858 3.142 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.084 0.916 9 C 0.181 3.819 10 N -0.576 5.576 11 C 0.151 3.849 12 C -0.161 4.161 13 C -0.176 4.176 14 C -0.178 4.178 15 C 0.556 3.444 16 O -0.555 6.555 17 C -0.093 4.093 18 C -0.111 4.111 19 C -0.064 4.064 20 C -0.098 4.098 21 C 0.436 3.564 22 N -0.726 5.726 23 N -0.689 5.689 24 H 0.410 0.590 25 C 0.360 3.640 26 N -0.525 5.525 27 C 0.112 3.888 28 C -0.051 4.051 29 H 0.270 0.730 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.198 0.802 40 H 0.143 0.857 41 H 0.335 0.665 42 H 0.193 0.807 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.525 -0.222 -8.408 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.121 4.121 3 Si 0.683 3.317 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.102 0.898 9 C 0.060 3.940 10 N -0.304 5.304 11 C 0.028 3.972 12 C -0.180 4.180 13 C -0.213 4.213 14 C -0.216 4.216 15 C 0.344 3.656 16 O -0.436 6.436 17 C -0.098 4.098 18 C -0.129 4.129 19 C -0.085 4.085 20 C -0.104 4.104 21 C 0.159 3.841 22 N -0.356 5.356 23 N -0.324 5.324 24 H 0.247 0.753 25 C 0.069 3.931 26 N -0.244 5.244 27 C 0.005 3.995 28 C -0.072 4.072 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.214 0.786 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.210 0.790 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.160 -0.999 -7.403 14.271 hybrid contribution 0.457 2.015 -1.460 2.530 sum 12.618 1.016 -8.863 15.453 Atomic orbital electron populations 1.69875 1.06226 1.27615 1.47631 1.24873 0.94722 0.98854 0.93696 0.87101 0.80774 0.84041 0.79748 1.18923 1.20572 1.18548 1.21275 0.88796 0.95348 1.53081 0.89753 1.20618 0.95990 0.78592 0.98790 1.47706 1.57365 1.15067 1.10305 1.20924 0.96495 0.95499 0.84322 1.22736 1.00007 0.97427 0.97857 1.22983 0.96029 0.99618 1.02654 1.22906 1.02538 1.04096 0.92067 1.18212 0.78066 0.86033 0.83256 1.90692 1.48554 1.19463 1.84889 1.20087 0.96563 0.97626 0.95521 1.22993 0.99993 0.91947 0.97941 1.20837 0.96602 0.99240 0.91779 1.19201 0.99405 0.98126 0.93645 1.21207 0.83019 0.90906 0.88937 1.70237 1.26607 1.11995 1.26764 1.44631 1.27302 1.37104 1.23320 0.75333 1.24435 0.90978 0.83852 0.93855 1.68372 1.25370 1.27711 1.02952 1.18314 0.91454 0.95414 0.94352 1.20816 0.97897 0.97936 0.90520 0.91998 0.95130 0.92720 0.89120 0.90341 0.87955 0.88625 0.89551 0.89176 0.88793 0.78624 0.83910 0.84795 0.79028 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.30 13.96 55.43 0.77 -23.53 16 2 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 3 Si 0.86 19.13 27.47 -169.99 -4.67 14.46 16 4 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 7 C -0.55 -13.59 7.59 -34.44 -0.26 -13.85 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.18 3.90 3.76 -5.19 -0.02 3.88 16 10 N -0.58 -11.73 2.52 -176.13 -0.44 -12.17 16 11 C 0.15 2.75 5.65 -4.04 -0.02 2.73 16 12 C -0.16 -2.57 6.01 -90.62 -0.54 -3.12 16 13 C -0.18 -2.50 10.18 -26.70 -0.27 -2.77 16 14 C -0.18 -2.36 10.25 -26.70 -0.27 -2.63 16 15 C 0.56 11.56 7.46 -12.27 -0.09 11.47 16 16 O -0.56 -12.30 16.18 5.33 0.09 -12.21 16 17 C -0.09 -1.81 5.50 -104.96 -0.58 -2.39 16 18 C -0.11 -2.19 7.33 -39.51 -0.29 -2.48 16 19 C -0.06 -1.18 9.59 -39.81 -0.38 -1.56 16 20 C -0.10 -1.64 5.90 -104.61 -0.62 -2.25 16 21 C 0.44 6.00 8.05 -153.54 -1.24 4.76 16 22 N -0.73 -10.23 13.49 32.63 0.44 -9.79 16 23 N -0.69 -6.21 5.43 -11.62 -0.06 -6.27 16 24 H 0.41 2.04 8.90 -40.82 -0.36 1.67 16 25 C 0.36 3.29 12.29 -90.13 -1.11 2.18 16 26 N -0.52 -7.17 10.33 -12.03 -0.12 -7.29 16 27 C 0.11 1.84 6.62 -84.52 -0.56 1.28 16 28 C -0.05 -0.91 9.56 -38.80 -0.37 -1.28 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 31 H 0.06 1.17 3.51 -51.93 -0.18 0.99 16 32 H 0.09 1.70 7.80 -51.93 -0.41 1.29 16 33 H 0.08 1.45 7.07 -51.93 -0.37 1.08 16 34 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.10 1.40 8.04 -51.93 -0.42 0.99 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.20 4.29 3.49 -52.48 -0.18 4.11 16 40 H 0.14 2.63 7.74 -52.48 -0.41 2.23 16 41 H 0.34 3.67 8.89 -40.82 -0.36 3.31 16 42 H 0.19 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.14 2.45 7.88 -52.48 -0.41 2.04 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -31.10 358.85 -10.49 -41.59 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -5.18 Total: 13.75 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -6.72 Total: -3.95 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.58 Total: -59.05 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.10 -10.49 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597147432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.728 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds