Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99816 * 2 1 4 4 H 1.48501 * 109.47022 * 270.00256 * 3 2 1 5 5 H 1.48493 * 109.47329 * 29.99882 * 3 2 1 6 6 H 1.48502 * 109.47279 * 150.00339 * 3 2 1 7 7 C 1.37873 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00556 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99737 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47154 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99997 * 287.56197 * 10 9 7 12 12 C 1.53003 * 109.47263 * 274.89341 * 11 10 9 13 13 C 1.52997 * 117.50060 * 246.06722 * 12 11 10 14 14 C 1.52996 * 117.49782 * 177.40702 * 12 11 10 15 15 C 1.34780 * 120.00105 * 107.56053 * 10 9 7 16 16 O 1.21538 * 119.99978 * 176.79271 * 15 10 9 17 17 C 1.47967 * 119.99584 * 357.07348 * 15 10 9 18 18 C 1.39916 * 119.78268 * 331.77346 * 17 15 10 19 19 C 1.36707 * 120.48854 * 179.97438 * 18 17 15 20 20 C 1.39121 * 119.87964 * 0.02562 * 19 18 17 21 21 C 1.47766 * 121.68929 * 179.97438 * 20 19 18 22 22 N 1.30658 * 121.44030 * 359.97438 * 21 20 19 23 23 N 1.38367 * 117.12196 * 180.02562 * 21 20 19 24 24 H 0.96999 * 119.94861 * 180.02562 * 23 21 20 25 25 C 1.36072 * 120.10984 * 0.03633 * 23 21 20 26 26 N 1.29651 * 123.36621 * 359.96244 * 25 23 21 27 27 C 1.35926 * 122.18265 * 0.02562 * 26 25 23 28 28 C 1.39108 * 119.77666 * 151.50437 * 17 15 10 29 29 H 0.96997 * 119.99981 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46988 * 60.00695 * 9 7 2 31 31 H 1.08993 * 109.47592 * 300.00229 * 9 7 2 32 32 H 1.08997 * 109.47469 * 34.89842 * 11 10 9 33 33 H 1.09005 * 109.47130 * 154.89491 * 11 10 9 34 34 H 1.09000 * 115.54617 * 31.74041 * 12 11 10 35 35 H 1.09000 * 117.49810 * 0.02562 * 13 12 11 36 36 H 1.09006 * 117.49788 * 145.01954 * 13 12 11 37 37 H 1.09002 * 117.49770 * 214.97851 * 14 12 11 38 38 H 1.08999 * 117.50427 * 0.02562 * 14 12 11 39 39 H 1.08007 * 119.75845 * 359.95762 * 18 17 15 40 40 H 1.08005 * 120.06198 * 180.02562 * 19 18 17 41 41 H 0.97002 * 119.99800 * 179.97438 * 22 21 20 42 42 H 1.07993 * 118.31378 * 179.97438 * 25 23 21 43 43 H 1.08003 * 120.27028 * 0.02562 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 3.8836 -3.3932 1.2088 12 6 5.0822 -3.1268 2.1218 13 6 6.0642 -4.2771 2.3521 14 6 5.1148 -3.8449 3.4723 15 6 4.5561 -3.0935 -1.1139 16 8 5.0139 -4.2192 -1.0968 17 6 4.6149 -2.2895 -2.3547 18 6 3.6459 -1.3091 -2.5942 19 6 3.6867 -0.5576 -3.7355 20 6 4.6978 -0.7676 -4.6677 21 6 4.7799 0.0210 -5.9147 22 7 3.9035 0.9493 -6.1929 23 7 5.8242 -0.2669 -6.7755 24 1 5.9174 0.2261 -7.6056 25 6 6.7206 -1.2407 -6.4596 26 7 6.6597 -1.9394 -5.3692 27 6 5.6823 -1.7525 -4.4432 28 6 5.6366 -2.5097 -3.2728 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8910 32 1 2.9632 -3.1371 1.7335 33 1 3.8636 -4.4478 0.9339 34 1 5.4907 -2.1172 2.0785 35 1 5.8567 -5.2236 1.8529 36 1 7.1190 -4.0243 2.4608 37 1 5.5454 -3.3079 4.3176 38 1 4.2827 -4.5075 3.7104 39 1 2.8596 -1.1448 -1.8721 40 1 2.9354 0.1976 -3.9131 41 1 3.9776 1.4547 -7.0176 42 1 7.5241 -1.4416 -7.1526 43 1 6.3854 -3.2646 -3.0833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597147432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = 69.695126 kcal Electronic energy + Delta-G solvation = -27468.141317 eV Core-core repulsion = 23707.507461 eV Total energy + Delta-G solvation = -3760.633856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.11806 -41.08424 -38.76142 -38.09048 -36.85005 -36.40751 -34.51955 -33.57798 -32.09741 -31.03890 -30.00227 -28.32670 -25.79908 -25.19664 -24.43120 -23.18130 -22.69286 -22.12649 -21.00250 -20.17207 -19.21674 -19.10576 -19.02782 -17.65353 -17.30118 -16.78984 -16.52767 -16.11658 -16.07155 -15.76494 -15.68768 -15.20965 -14.98137 -14.80421 -14.75007 -14.39865 -14.01805 -13.55442 -13.35188 -13.26547 -12.96444 -12.88185 -12.67245 -12.51278 -12.32135 -12.10409 -11.98549 -11.71351 -11.33524 -11.27639 -11.00254 -10.88942 -10.79838 -10.66814 -10.58464 -10.03158 -9.49223 -8.77994 -8.34513 -6.41481 -0.63912 -0.18566 1.12978 1.36657 1.40195 1.42629 1.47136 1.86687 2.04493 2.16671 2.30327 2.93855 2.95947 2.99223 3.00205 3.21568 3.57612 3.73304 3.85059 4.03339 4.07463 4.13726 4.15578 4.30621 4.37224 4.46371 4.60960 4.67483 4.76763 4.78889 4.81800 4.83651 4.92983 5.03405 5.05460 5.17517 5.26120 5.29399 5.31562 5.34072 5.36798 5.62889 5.72972 6.09659 6.22897 6.54496 6.65796 6.94908 7.11499 7.15954 7.25411 8.80444 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.004972 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.686326 B = 5630.370945 C = 7827.123964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.038 3.962 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.242 1.242 7 C -0.538 4.538 8 H 0.042 0.958 9 C 0.191 3.809 10 N -0.579 5.579 11 C 0.150 3.850 12 C -0.183 4.183 13 C -0.171 4.171 14 C -0.156 4.156 15 C 0.552 3.448 16 O -0.575 6.575 17 C -0.104 4.104 18 C -0.134 4.134 19 C -0.065 4.065 20 C -0.114 4.114 21 C 0.432 3.568 22 N -0.743 5.743 23 N -0.668 5.668 24 H 0.435 0.565 25 C 0.394 3.606 26 N -0.565 5.565 27 C 0.132 3.868 28 C -0.060 4.060 29 H 0.271 0.729 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.171 0.829 40 H 0.136 0.864 41 H 0.352 0.648 42 H 0.258 0.742 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.846 0.967 -10.525 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.164 4.164 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.060 0.940 9 C 0.070 3.930 10 N -0.307 5.307 11 C 0.028 3.972 12 C -0.203 4.203 13 C -0.208 4.208 14 C -0.193 4.193 15 C 0.341 3.659 16 O -0.457 6.457 17 C -0.108 4.108 18 C -0.152 4.152 19 C -0.085 4.085 20 C -0.120 4.120 21 C 0.154 3.846 22 N -0.375 5.375 23 N -0.304 5.304 24 H 0.277 0.723 25 C 0.105 3.895 26 N -0.287 5.287 27 C 0.024 3.976 28 C -0.080 4.080 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.119 0.881 39 H 0.187 0.813 40 H 0.153 0.847 41 H 0.171 0.829 42 H 0.273 0.727 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.507 0.212 -9.569 18.224 hybrid contribution -0.521 1.589 -1.056 1.978 sum 14.986 1.800 -10.626 18.459 Atomic orbital electron populations 1.70006 1.08034 1.28538 1.49926 1.25573 0.95259 1.02217 0.93304 0.86185 0.80197 0.79658 0.80227 1.18161 1.20545 1.16573 1.21283 0.90479 0.93688 1.52135 0.93985 1.20431 0.93634 0.79568 0.99350 1.47764 1.57086 1.14825 1.11056 1.20951 0.97418 0.94754 0.84084 1.22585 0.99933 0.97954 0.99793 1.23012 0.96697 0.98244 1.02804 1.23026 1.02110 1.02810 0.91363 1.18513 0.77659 0.85978 0.83732 1.90657 1.49599 1.20181 1.85279 1.19973 0.97548 0.97856 0.95449 1.22546 1.00184 0.93782 0.98692 1.20736 0.97122 0.98788 0.91872 1.19372 0.98984 0.98927 0.94742 1.20761 0.84388 0.90710 0.88722 1.70179 1.27128 1.12167 1.28055 1.44541 1.25605 1.36817 1.23397 0.72344 1.25693 0.90432 0.80767 0.92604 1.68478 1.25346 1.30404 1.04448 1.18410 0.91332 0.93723 0.94148 1.20837 0.97564 0.98567 0.91074 0.91942 0.94577 0.91621 0.90445 0.91054 0.88419 0.89429 0.88057 0.87008 0.88097 0.81265 0.84657 0.82902 0.72667 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.76 13.96 21.45 0.30 -53.47 16 2 C 0.04 2.02 5.46 84.65 0.46 2.48 16 3 Si 0.91 39.99 27.47 68.60 1.88 41.87 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.24 -9.79 6.54 99.48 0.65 -9.14 16 7 C -0.54 -28.24 7.59 25.60 0.19 -28.05 16 8 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 9 C 0.19 8.56 3.76 85.63 0.32 8.88 16 10 N -0.58 -24.75 2.52 -829.43 -2.09 -26.84 16 11 C 0.15 5.78 5.65 86.38 0.49 6.26 16 12 C -0.18 -5.87 6.01 -10.79 -0.06 -5.94 16 13 C -0.17 -4.70 10.18 30.62 0.31 -4.39 16 14 C -0.16 -3.89 10.25 30.62 0.31 -3.58 16 15 C 0.55 23.97 7.46 86.82 0.65 24.62 16 16 O -0.57 -26.41 16.18 -3.83 -0.06 -26.47 16 17 C -0.10 -4.17 5.50 -20.08 -0.11 -4.28 16 18 C -0.13 -5.50 7.33 22.32 0.16 -5.34 16 19 C -0.06 -2.41 9.59 22.12 0.21 -2.20 16 20 C -0.11 -3.68 5.90 -19.85 -0.12 -3.79 16 21 C 0.43 10.66 8.05 136.10 1.10 11.76 16 22 N -0.74 -19.17 13.49 -50.67 -0.68 -19.86 16 23 N -0.67 -8.78 5.43 -190.68 -1.04 -9.81 16 24 H 0.44 1.81 8.90 -92.71 -0.83 0.99 16 25 C 0.39 5.05 12.29 180.18 2.21 7.27 16 26 N -0.57 -13.53 10.33 -191.98 -1.98 -15.51 16 27 C 0.13 4.15 6.62 39.50 0.26 4.41 16 28 C -0.06 -2.13 9.56 22.78 0.22 -1.91 16 29 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 31 H 0.07 2.89 3.51 -2.39 -0.01 2.88 16 32 H 0.08 3.10 7.80 -2.39 -0.02 3.08 16 33 H 0.07 2.79 7.07 -2.38 -0.02 2.77 16 34 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.09 2.56 8.04 -2.39 -0.02 2.54 16 36 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 39 H 0.17 7.88 3.49 -2.91 -0.01 7.87 16 40 H 0.14 5.13 7.74 -2.91 -0.02 5.10 16 41 H 0.35 6.64 8.89 -92.71 -0.82 5.82 16 42 H 0.26 -0.07 8.06 -2.91 -0.02 -0.09 16 43 H 0.14 4.99 7.88 -2.91 -0.02 4.96 16 Total: -1.00 -72.71 358.85 2.33 -70.38 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.62 Total: 33.51 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 6.61 Total: 6.19 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.49 Total: -125.49 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.06 Total: -26.47 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.88 Total: 41.87 kcal Total: -72.71 2.33 -70.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597147432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.080 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds