Wall clock time and date at job start Tue Mar 31 2020 14:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48505 * 109.46921 * 275.96695 * 3 2 1 5 5 H 1.48499 * 109.47426 * 35.96614 * 3 2 1 6 6 H 1.48500 * 109.47491 * 155.97009 * 3 2 1 7 7 C 1.39095 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00363 * 2.15640 * 7 2 1 9 9 N 1.36800 * 120.00038 * 182.15396 * 7 2 1 10 10 C 1.34773 * 120.00113 * 299.71061 * 9 7 2 11 11 O 1.21592 * 120.00364 * 183.20180 * 10 9 7 12 12 C 1.47812 * 120.00022 * 3.20186 * 10 9 7 13 13 C 1.40013 * 119.78856 * 332.57717 * 12 10 9 14 14 C 1.36672 * 120.48287 * 179.97438 * 13 12 10 15 15 C 1.39161 * 119.88624 * 0.02562 * 14 13 12 16 16 C 1.47731 * 121.68121 * 179.97438 * 15 14 13 17 17 N 1.30674 * 121.43727 * 0.04019 * 16 15 14 18 18 N 1.38381 * 117.12601 * 180.02562 * 16 15 14 19 19 H 0.97006 * 119.94488 * 180.02562 * 18 16 15 20 20 C 1.36068 * 120.11202 * 359.97438 * 18 16 15 21 21 N 1.29649 * 123.37282 * 0.02562 * 20 18 16 22 22 C 1.35941 * 122.17055 * 359.97438 * 21 20 18 23 23 C 1.39208 * 119.79341 * 152.30403 * 12 10 9 24 24 C 1.46500 * 120.00145 * 119.70538 * 9 7 2 25 25 C 1.54274 * 110.03143 * 53.43674 * 24 9 7 26 26 C 1.54962 * 104.15755 * 217.13776 * 25 24 9 27 27 C 1.54887 * 102.78118 * 37.88606 * 26 25 24 28 28 C 1.53875 * 110.03651 * 296.21977 * 24 9 7 29 29 H 0.97001 * 119.99754 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.75803 * 359.97438 * 13 12 10 31 31 H 1.08004 * 120.05508 * 180.02562 * 14 13 12 32 32 H 0.96998 * 120.00121 * 180.02562 * 17 16 15 33 33 H 1.08002 * 118.31184 * 180.02562 * 20 18 16 34 34 H 1.08003 * 120.26246 * 359.97438 * 23 12 10 35 35 H 1.08997 * 110.01898 * 174.82417 * 24 9 7 36 36 H 1.08996 * 110.48134 * 335.78098 * 25 24 9 37 37 H 1.08998 * 110.48910 * 98.42178 * 25 24 9 38 38 H 1.09000 * 110.71820 * 279.56950 * 26 25 24 39 39 H 1.09010 * 110.92145 * 156.29777 * 26 25 24 40 40 H 1.08999 * 110.48765 * 203.40817 * 27 26 25 41 41 H 1.08999 * 110.60011 * 80.81507 * 27 26 25 42 42 H 1.09002 * 110.03000 * 238.57065 * 28 24 9 43 43 H 1.09001 * 110.02959 * 359.94528 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3688 2.1191 -1.3926 5 1 1.5136 2.6130 0.8222 6 1 3.6023 1.4071 0.5701 7 6 2.0087 -1.2046 -0.0005 8 1 1.4693 -2.1396 -0.0361 9 7 3.3760 -1.2051 0.0440 10 6 4.0824 -0.6075 -0.9359 11 8 5.2972 -0.6580 -0.9273 12 6 3.3803 0.1094 -2.0213 13 6 2.0839 -0.2754 -2.3841 14 6 1.4214 0.3779 -3.3852 15 6 2.0376 1.4333 -4.0510 16 6 1.3585 2.1665 -5.1390 17 7 0.1486 1.8532 -5.5204 18 7 2.0589 3.1996 -5.7366 19 1 1.6518 3.7086 -6.4550 20 6 3.3173 3.5033 -5.3174 21 7 3.9243 2.8680 -4.3641 22 6 3.3435 1.8346 -3.6986 23 6 4.0100 1.1665 -2.6724 24 6 4.0725 -1.8551 1.1569 25 6 3.5832 -3.3104 1.3087 26 6 3.5579 -3.5439 2.8404 27 6 3.0595 -2.1828 3.3863 28 6 3.7401 -1.1386 2.4775 29 1 -0.4850 0.8401 0.0004 30 1 1.6039 -1.0944 -1.8691 31 1 0.4214 0.0756 -3.6592 32 1 -0.2774 2.3484 -6.2375 33 1 3.8372 4.3154 -5.8039 34 1 5.0082 1.4643 -2.3873 35 1 5.1485 -1.8392 0.9841 36 1 2.5834 -3.4223 0.8893 37 1 4.2787 -3.9987 0.8285 38 1 4.5576 -3.7669 3.2131 39 1 2.8631 -4.3425 3.1010 40 1 3.3728 -2.0492 4.4218 41 1 1.9750 -2.1107 3.3045 42 1 4.6549 -0.7755 2.9458 43 1 3.0613 -0.3065 2.2901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597277151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:42 Heat of formation + Delta-G solvation = 61.711013 kcal Electronic energy + Delta-G solvation = -28520.538651 eV Core-core repulsion = 24759.558578 eV Total energy + Delta-G solvation = -3760.980073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75168 -39.60027 -37.57725 -36.45574 -35.31199 -34.40900 -32.18900 -31.87547 -30.48247 -29.20434 -28.07865 -27.27336 -25.08748 -24.21425 -23.80828 -21.31049 -20.68835 -20.22805 -19.15383 -18.87447 -18.18261 -18.00248 -16.79286 -15.90931 -15.59908 -15.14122 -14.92303 -14.71951 -14.50074 -14.17025 -14.02845 -13.74836 -13.47781 -13.16726 -13.03116 -12.64237 -12.35038 -12.08386 -11.71226 -11.52065 -11.29717 -11.20400 -10.92519 -10.80479 -10.57715 -10.50828 -10.40930 -10.13709 -10.05103 -9.94247 -9.73281 -9.47693 -9.21720 -9.09574 -8.67561 -8.18220 -7.56154 -7.34703 -6.51753 -4.36209 0.91870 1.27376 2.51634 2.90447 3.00293 3.15050 3.29397 3.34831 3.84966 4.07430 4.16586 4.26898 4.52208 4.63707 4.78486 5.05481 5.24815 5.29263 5.37134 5.45060 5.49896 5.71226 5.89975 6.01777 6.06315 6.12927 6.16261 6.17880 6.22186 6.27727 6.39489 6.42498 6.46243 6.55594 6.62182 6.64297 6.87853 6.95315 6.96701 7.03927 7.15435 7.21367 7.45869 7.61817 7.78294 8.11979 8.28045 8.33520 8.88089 9.14277 9.60707 10.49843 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.004516 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.689955 B = 6198.140119 C = 6628.150246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.091 3.909 3 Si 0.842 3.158 4 H -0.246 1.246 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.359 4.359 8 H 0.108 0.892 9 N -0.456 5.456 10 C 0.529 3.471 11 O -0.584 6.584 12 C -0.095 4.095 13 C -0.064 4.064 14 C -0.073 4.073 15 C -0.097 4.097 16 C 0.438 3.562 17 N -0.732 5.732 18 N -0.690 5.690 19 H 0.408 0.592 20 C 0.351 3.649 21 N -0.521 5.521 22 C 0.106 3.894 23 C -0.056 4.056 24 C 0.134 3.866 25 C -0.127 4.127 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.127 4.127 29 H 0.278 0.722 30 H 0.192 0.808 31 H 0.139 0.861 32 H 0.332 0.668 33 H 0.191 0.809 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 3.561 -5.893 7.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.120 4.120 3 Si 0.668 3.332 4 H -0.170 1.170 5 H -0.219 1.219 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.125 0.875 9 N -0.176 5.176 10 C 0.319 3.681 11 O -0.469 6.469 12 C -0.099 4.099 13 C -0.082 4.082 14 C -0.093 4.093 15 C -0.102 4.102 16 C 0.162 3.838 17 N -0.362 5.362 18 N -0.325 5.325 19 H 0.244 0.756 20 C 0.059 3.941 21 N -0.240 5.240 22 C -0.001 4.001 23 C -0.077 4.077 24 C 0.031 3.969 25 C -0.165 4.165 26 C -0.158 4.158 27 C -0.154 4.154 28 C -0.166 4.166 29 H 0.089 0.911 30 H 0.208 0.792 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.207 0.793 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.812 2.869 -5.062 6.462 hybrid contribution -0.567 2.144 -1.114 2.481 sum 2.245 5.012 -6.175 8.264 Atomic orbital electron populations 1.69586 1.05967 1.28496 1.44257 1.25701 0.95201 0.98257 0.92796 0.87455 0.80990 0.84021 0.80724 1.16985 1.21880 1.18348 1.18739 0.79012 0.94900 1.55901 0.87518 1.43508 1.06451 1.50016 1.17662 1.18451 0.86500 0.81104 0.82068 1.90629 1.13803 1.64533 1.77921 1.19988 0.95545 0.96859 0.97533 1.22692 0.92168 1.01197 0.92106 1.20809 1.00497 0.93934 0.94110 1.19173 0.94394 0.99611 0.97057 1.21282 0.87997 0.84174 0.90318 1.70255 1.06971 1.35177 1.23823 1.44604 1.16716 1.33867 1.37308 0.75567 1.24348 0.82158 0.96173 0.91424 1.68324 1.34834 1.10932 1.09950 1.18207 0.90977 0.94116 0.96824 1.20781 0.99658 0.93873 0.93341 1.21687 0.96890 0.91763 0.86585 1.22649 1.02693 0.95664 0.95464 1.22418 1.00116 0.97232 0.96015 1.22250 1.00963 0.94598 0.97540 1.22389 0.99815 0.99203 0.95168 0.91120 0.79189 0.84338 0.85159 0.79276 0.84510 0.89867 0.89657 0.92586 0.92352 0.92118 0.92878 0.91106 0.92908 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.65 13.95 55.50 0.77 -20.88 16 2 C 0.09 2.23 3.39 -17.45 -0.06 2.17 16 3 Si 0.84 20.37 22.12 -169.99 -3.76 16.61 16 4 H -0.25 -5.89 4.07 56.52 0.23 -5.66 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.58 6.61 56.52 0.37 -6.21 16 7 C -0.36 -8.46 5.43 -15.02 -0.08 -8.54 16 8 H 0.11 2.62 6.92 -52.49 -0.36 2.26 16 9 N -0.46 -10.47 1.90 -107.62 -0.20 -10.67 16 10 C 0.53 12.77 5.63 -12.35 -0.07 12.70 16 11 O -0.58 -15.06 15.99 5.28 0.08 -14.98 16 12 C -0.09 -2.14 2.97 -104.96 -0.31 -2.45 16 13 C -0.06 -1.38 5.86 -39.48 -0.23 -1.61 16 14 C -0.07 -1.48 9.41 -39.81 -0.37 -1.86 16 15 C -0.10 -1.87 5.65 -104.59 -0.59 -2.46 16 16 C 0.44 6.96 8.05 -153.53 -1.24 5.72 16 17 N -0.73 -11.42 13.49 32.63 0.44 -10.98 16 18 N -0.69 -7.74 5.43 -11.62 -0.06 -7.80 16 19 H 0.41 2.80 8.90 -40.82 -0.36 2.44 16 20 C 0.35 4.07 12.29 -90.13 -1.11 2.96 16 21 N -0.52 -8.67 10.33 -12.03 -0.12 -8.80 16 22 C 0.11 2.09 5.94 -84.52 -0.50 1.58 16 23 C -0.06 -1.21 7.77 -38.78 -0.30 -1.51 16 24 C 0.13 2.74 3.29 -66.81 -0.22 2.52 16 25 C -0.13 -2.22 6.40 -25.03 -0.16 -2.38 16 26 C -0.12 -1.79 6.91 -24.70 -0.17 -1.96 16 27 C -0.12 -1.88 6.83 -25.08 -0.17 -2.05 16 28 C -0.13 -2.44 6.31 -25.62 -0.16 -2.60 16 29 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.19 4.34 4.75 -52.49 -0.25 4.09 16 31 H 0.14 2.74 7.74 -52.48 -0.41 2.33 16 32 H 0.33 4.10 8.89 -40.82 -0.36 3.73 16 33 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 2.94 7.87 -52.48 -0.41 2.53 16 35 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 36 H 0.08 1.61 6.22 -51.93 -0.32 1.29 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.61 6.52 -51.93 -0.34 1.27 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -30.35 333.12 -9.06 -39.41 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.47 Total: 12.83 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -5.75 Total: 0.24 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.82 Total: -59.13 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -3.76 Total: 16.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.35 -9.06 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597277151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.117 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds