Wall clock time and date at job start Tue Mar 31 2020 14:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86800 * 120.00100 * 2 1 4 4 H 1.48505 * 109.46921 * 275.96695 * 3 2 1 5 5 H 1.48499 * 109.47426 * 35.96614 * 3 2 1 6 6 H 1.48500 * 109.47491 * 155.97009 * 3 2 1 7 7 C 1.39095 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00363 * 2.15640 * 7 2 1 9 9 N 1.36800 * 120.00038 * 182.15396 * 7 2 1 10 10 C 1.34773 * 120.00113 * 299.71061 * 9 7 2 11 11 O 1.21592 * 120.00364 * 183.20180 * 10 9 7 12 12 C 1.47812 * 120.00022 * 3.20186 * 10 9 7 13 13 C 1.40013 * 119.78856 * 332.57717 * 12 10 9 14 14 C 1.36672 * 120.48287 * 179.97438 * 13 12 10 15 15 C 1.39161 * 119.88624 * 0.02562 * 14 13 12 16 16 C 1.47731 * 121.68121 * 179.97438 * 15 14 13 17 17 N 1.30674 * 121.43727 * 0.04019 * 16 15 14 18 18 N 1.38381 * 117.12601 * 180.02562 * 16 15 14 19 19 H 0.97006 * 119.94488 * 180.02562 * 18 16 15 20 20 C 1.36068 * 120.11202 * 359.97438 * 18 16 15 21 21 N 1.29649 * 123.37282 * 0.02562 * 20 18 16 22 22 C 1.35941 * 122.17055 * 359.97438 * 21 20 18 23 23 C 1.39208 * 119.79341 * 152.30403 * 12 10 9 24 24 C 1.46500 * 120.00145 * 119.70538 * 9 7 2 25 25 C 1.54274 * 110.03143 * 53.43674 * 24 9 7 26 26 C 1.54962 * 104.15755 * 217.13776 * 25 24 9 27 27 C 1.54887 * 102.78118 * 37.88606 * 26 25 24 28 28 C 1.53875 * 110.03651 * 296.21977 * 24 9 7 29 29 H 0.97001 * 119.99754 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.75803 * 359.97438 * 13 12 10 31 31 H 1.08004 * 120.05508 * 180.02562 * 14 13 12 32 32 H 0.96998 * 120.00121 * 180.02562 * 17 16 15 33 33 H 1.08002 * 118.31184 * 180.02562 * 20 18 16 34 34 H 1.08003 * 120.26246 * 359.97438 * 23 12 10 35 35 H 1.08997 * 110.01898 * 174.82417 * 24 9 7 36 36 H 1.08996 * 110.48134 * 335.78098 * 25 24 9 37 37 H 1.08998 * 110.48910 * 98.42178 * 25 24 9 38 38 H 1.09000 * 110.71820 * 279.56950 * 26 25 24 39 39 H 1.09010 * 110.92145 * 156.29777 * 26 25 24 40 40 H 1.08999 * 110.48765 * 203.40817 * 27 26 25 41 41 H 1.08999 * 110.60011 * 80.81507 * 27 26 25 42 42 H 1.09002 * 110.03000 * 238.57065 * 28 24 9 43 43 H 1.09001 * 110.02959 * 359.94528 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3688 2.1191 -1.3926 5 1 1.5136 2.6130 0.8222 6 1 3.6023 1.4071 0.5701 7 6 2.0087 -1.2046 -0.0005 8 1 1.4693 -2.1396 -0.0361 9 7 3.3760 -1.2051 0.0440 10 6 4.0824 -0.6075 -0.9359 11 8 5.2972 -0.6580 -0.9273 12 6 3.3803 0.1094 -2.0213 13 6 2.0839 -0.2754 -2.3841 14 6 1.4214 0.3779 -3.3852 15 6 2.0376 1.4333 -4.0510 16 6 1.3585 2.1665 -5.1390 17 7 0.1486 1.8532 -5.5204 18 7 2.0589 3.1996 -5.7366 19 1 1.6518 3.7086 -6.4550 20 6 3.3173 3.5033 -5.3174 21 7 3.9243 2.8680 -4.3641 22 6 3.3435 1.8346 -3.6986 23 6 4.0100 1.1665 -2.6724 24 6 4.0725 -1.8551 1.1569 25 6 3.5832 -3.3104 1.3087 26 6 3.5579 -3.5439 2.8404 27 6 3.0595 -2.1828 3.3863 28 6 3.7401 -1.1386 2.4775 29 1 -0.4850 0.8401 0.0004 30 1 1.6039 -1.0944 -1.8691 31 1 0.4214 0.0756 -3.6592 32 1 -0.2774 2.3484 -6.2375 33 1 3.8372 4.3154 -5.8039 34 1 5.0082 1.4643 -2.3873 35 1 5.1485 -1.8392 0.9841 36 1 2.5834 -3.4223 0.8893 37 1 4.2787 -3.9987 0.8285 38 1 4.5576 -3.7669 3.2131 39 1 2.8631 -4.3425 3.1010 40 1 3.3728 -2.0492 4.4218 41 1 1.9750 -2.1107 3.3045 42 1 4.6549 -0.7755 2.9458 43 1 3.0613 -0.3065 2.2901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597277151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:41 Heat of formation + Delta-G solvation = 42.330936 kcal Electronic energy + Delta-G solvation = -28521.379034 eV Core-core repulsion = 24759.558578 eV Total energy + Delta-G solvation = -3761.820456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17683 -41.21370 -39.02947 -38.10782 -36.63467 -36.10163 -33.84290 -33.41599 -32.02780 -30.61376 -29.51369 -28.79422 -26.90587 -25.74970 -25.10170 -22.75791 -22.28914 -21.63177 -20.85888 -20.31022 -19.60057 -19.18408 -18.48005 -17.60069 -17.26612 -16.59468 -16.35434 -16.13746 -15.99314 -15.85697 -15.66411 -15.31139 -15.02153 -14.86527 -14.57680 -14.17393 -14.00769 -13.78043 -13.24116 -13.00230 -12.93665 -12.80932 -12.61943 -12.44313 -12.09590 -12.08090 -11.82524 -11.81914 -11.39983 -11.28804 -11.27565 -11.05461 -10.73895 -10.65815 -10.46725 -9.82130 -9.40185 -8.76264 -8.46056 -6.29466 -0.57076 -0.11772 1.12439 1.19570 1.28902 1.35916 1.51570 1.87724 2.12214 2.22149 2.52758 2.84516 3.02252 3.07071 3.30356 3.74767 3.81544 3.88118 3.97089 4.14781 4.16459 4.20978 4.37273 4.58466 4.63115 4.68364 4.69298 4.73452 4.75267 4.88780 4.93179 5.03949 5.11471 5.16836 5.21180 5.24430 5.39675 5.41330 5.47532 5.51268 5.60628 5.71371 5.79620 5.97608 6.24508 6.39291 6.95055 6.95882 7.17372 7.25480 7.72830 8.55560 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.004516 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.689955 B = 6198.140119 C = 6628.150246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.083 3.917 3 Si 0.876 3.124 4 H -0.242 1.242 5 H -0.302 1.302 6 H -0.283 1.283 7 C -0.339 4.339 8 H 0.097 0.903 9 N -0.459 5.459 10 C 0.518 3.482 11 O -0.611 6.611 12 C -0.111 4.111 13 C -0.078 4.078 14 C -0.070 4.070 15 C -0.115 4.115 16 C 0.432 3.568 17 N -0.739 5.739 18 N -0.670 5.670 19 H 0.435 0.565 20 C 0.388 3.612 21 N -0.569 5.569 22 C 0.120 3.880 23 C -0.078 4.078 24 C 0.122 3.878 25 C -0.123 4.123 26 C -0.108 4.108 27 C -0.110 4.110 28 C -0.129 4.129 29 H 0.278 0.722 30 H 0.173 0.827 31 H 0.140 0.860 32 H 0.351 0.649 33 H 0.257 0.743 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 4.851 -7.421 9.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.125 4.125 3 Si 0.705 3.295 4 H -0.165 1.165 5 H -0.230 1.230 6 H -0.209 1.209 7 C -0.467 4.467 8 H 0.114 0.886 9 N -0.179 5.179 10 C 0.308 3.692 11 O -0.498 6.498 12 C -0.116 4.116 13 C -0.096 4.096 14 C -0.091 4.091 15 C -0.121 4.121 16 C 0.155 3.845 17 N -0.371 5.371 18 N -0.305 5.305 19 H 0.276 0.724 20 C 0.098 3.902 21 N -0.291 5.291 22 C 0.013 3.987 23 C -0.099 4.099 24 C 0.019 3.981 25 C -0.161 4.161 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.167 4.167 29 H 0.089 0.911 30 H 0.190 0.810 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.273 0.727 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.668 4.184 -6.638 8.288 hybrid contribution -0.515 1.870 -0.873 2.127 sum 2.152 6.054 -7.511 9.884 Atomic orbital electron populations 1.69607 1.06329 1.28550 1.46131 1.25756 0.95146 0.98709 0.92904 0.86994 0.78975 0.83326 0.80236 1.16541 1.22994 1.20939 1.18517 0.79200 0.94232 1.54712 0.88566 1.43670 1.06287 1.49761 1.18136 1.18854 0.86440 0.81216 0.82655 1.90582 1.14771 1.65685 1.78733 1.19916 0.96056 0.97809 0.97818 1.22328 0.92162 1.01546 0.93597 1.20801 1.00316 0.94184 0.93751 1.19398 0.94675 0.99752 0.98230 1.20774 0.88381 0.85285 0.90090 1.70181 1.07000 1.35686 1.24272 1.44498 1.16393 1.32482 1.37173 0.72360 1.25625 0.81412 0.94786 0.88367 1.68411 1.35998 1.11808 1.12863 1.18296 0.90668 0.94071 0.95668 1.20778 0.99593 0.94674 0.94821 1.21966 0.96159 0.93654 0.86317 1.22609 1.01689 0.93763 0.98027 1.22401 1.01935 0.96930 0.93267 1.22219 0.99745 0.94294 0.98491 1.22400 0.99992 0.98999 0.95343 0.91148 0.81005 0.84190 0.83004 0.72733 0.85542 0.90995 0.91389 0.91488 0.90119 0.90035 0.89986 0.92625 0.91619 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.60 13.95 21.69 0.30 -45.30 16 2 C 0.08 4.23 3.39 84.97 0.29 4.52 16 3 Si 0.88 43.84 22.12 68.60 1.52 45.36 16 4 H -0.24 -11.83 4.07 99.48 0.41 -11.43 16 5 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 6 H -0.28 -15.17 6.61 99.48 0.66 -14.52 16 7 C -0.34 -16.73 5.43 84.12 0.46 -16.28 16 8 H 0.10 4.96 6.92 -2.91 -0.02 4.94 16 9 N -0.46 -22.08 1.90 -612.65 -1.16 -23.24 16 10 C 0.52 26.33 5.63 86.78 0.49 26.82 16 11 O -0.61 -33.16 15.99 -4.01 -0.06 -33.22 16 12 C -0.11 -5.29 2.97 -20.08 -0.06 -5.35 16 13 C -0.08 -3.53 5.86 22.33 0.13 -3.40 16 14 C -0.07 -2.89 9.41 22.12 0.21 -2.69 16 15 C -0.11 -4.33 5.65 -19.85 -0.11 -4.44 16 16 C 0.43 12.50 8.05 136.08 1.09 13.60 16 17 N -0.74 -21.04 13.49 -50.68 -0.68 -21.73 16 18 N -0.67 -11.82 5.43 -190.69 -1.04 -12.86 16 19 H 0.43 3.43 8.90 -92.70 -0.83 2.60 16 20 C 0.39 7.08 12.29 180.18 2.21 9.30 16 21 N -0.57 -17.56 10.33 -191.98 -1.98 -19.55 16 22 C 0.12 4.69 5.94 39.49 0.23 4.92 16 23 C -0.08 -3.47 7.77 22.79 0.18 -3.30 16 24 C 0.12 5.12 3.29 45.72 0.15 5.27 16 25 C -0.12 -4.29 6.40 31.70 0.20 -4.09 16 26 C -0.11 -2.98 6.91 31.91 0.22 -2.76 16 27 C -0.11 -3.43 6.83 31.67 0.22 -3.22 16 28 C -0.13 -5.00 6.31 31.32 0.20 -4.81 16 29 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.17 8.30 4.75 -2.91 -0.01 8.28 16 31 H 0.14 5.61 7.74 -2.91 -0.02 5.59 16 32 H 0.35 7.43 8.89 -92.71 -0.82 6.60 16 33 H 0.26 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.13 5.74 7.87 -2.91 -0.02 5.72 16 35 H 0.07 3.16 6.95 -2.39 -0.02 3.14 16 36 H 0.07 2.62 6.22 -2.39 -0.01 2.60 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.04 1.88 6.52 -2.39 -0.02 1.86 16 Total: -1.00 -70.92 333.12 2.08 -68.84 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.92 Total: 27.59 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 6.11 Total: 14.11 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -4.56 Total: -122.67 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.06 Total: -33.22 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.52 Total: 45.36 kcal Total: -70.92 2.08 -68.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597277151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.167 kcal (2) G-P(sol) polarization free energy of solvation -70.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds