Wall clock time and date at job start Tue Mar 31 2020 14:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35589 * 117.00134 * 2 1 4 4 C 1.40000 * 118.80813 * 180.02562 * 3 2 1 5 5 C 1.38742 * 119.44320 * 180.02562 * 4 3 2 6 6 C 1.47932 * 121.35797 * 179.97438 * 5 4 3 7 7 O 1.21534 * 120.00484 * 174.83286 * 6 5 4 8 8 N 1.34782 * 119.99735 * 354.83660 * 6 5 4 9 9 C 1.46499 * 120.00140 * 184.92715 * 8 6 5 10 10 C 1.52992 * 109.47177 * 184.86641 * 9 8 6 11 11 C 1.50694 * 115.55101 * 305.76529 * 10 9 8 12 12 H 1.08001 * 120.00147 * 144.26161 * 11 10 9 13 13 C 1.37878 * 120.00218 * 324.25831 * 11 10 9 14 14 N 1.31523 * 119.99628 * 3.00069 * 13 11 10 15 15 Si 1.86799 * 120.00455 * 182.99278 * 13 11 10 16 16 H 1.48501 * 109.46721 * 90.00413 * 15 13 11 17 17 H 1.48497 * 109.47396 * 210.00262 * 15 13 11 18 18 H 1.48492 * 109.47249 * 330.00745 * 15 13 11 19 19 C 1.53007 * 117.49847 * 160.09321 * 10 9 8 20 20 C 1.53006 * 117.49988 * 91.43720 * 10 9 8 21 21 C 1.46305 * 117.28867 * 359.97438 * 5 4 3 22 22 C 1.39939 * 121.54874 * 180.02562 * 21 5 4 23 23 C 1.36334 * 119.58478 * 179.97438 * 22 21 5 24 24 C 1.39292 * 120.80008 * 0.02859 * 23 22 21 25 25 C 1.36118 * 121.08425 * 359.97235 * 24 23 22 26 26 C 1.40632 * 119.72676 * 359.97438 * 25 24 23 27 27 N 1.31222 * 118.80750 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.46923 * 59.99503 * 1 2 3 29 29 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46810 * 299.99507 * 1 2 3 31 31 H 1.07996 * 120.28067 * 359.72190 * 4 3 2 32 32 H 0.96998 * 119.99930 * 4.91430 * 8 6 5 33 33 H 1.09008 * 109.46824 * 304.86652 * 9 8 6 34 34 H 1.08994 * 109.47229 * 64.86262 * 9 8 6 35 35 H 0.96996 * 119.99698 * 184.99977 * 14 13 11 36 36 H 1.08990 * 117.49740 * 0.02562 * 19 10 9 37 37 H 1.09004 * 117.49510 * 145.02131 * 19 10 9 38 38 H 1.09002 * 117.49866 * 214.97933 * 20 10 9 39 39 H 1.08996 * 117.49598 * 359.97421 * 20 10 9 40 40 H 1.08001 * 120.20993 * 359.95518 * 22 21 5 41 41 H 1.07998 * 119.59736 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.46062 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.14199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 3.4439 1.2522 -0.0005 5 6 4.0875 2.4814 0.0000 6 6 5.5637 2.5774 0.0000 7 8 6.1021 3.6628 -0.0943 8 7 6.3116 1.4610 0.1045 9 6 7.7690 1.5631 0.2133 10 6 8.3811 0.1611 0.1964 11 6 7.8365 -0.7984 1.2229 12 1 7.7269 -1.8448 0.9794 13 6 7.4780 -0.3403 2.4730 14 7 7.5557 0.9430 2.7502 15 14 6.8818 -1.5422 3.7727 16 1 8.0407 -2.0360 4.5590 17 1 5.9248 -0.8575 4.6784 18 1 6.2061 -2.6887 3.1139 19 6 9.8627 0.0415 -0.1664 20 6 8.7917 -0.4142 -1.1606 21 6 3.2467 3.6787 0.0005 22 6 3.8020 4.9632 0.0006 23 6 2.9808 6.0515 0.0005 24 6 1.5961 5.9001 0.0011 25 6 1.0242 4.6649 0.0011 26 6 1.8394 3.5190 0.0000 27 7 1.3072 2.2935 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0176 0.3373 0.0036 32 1 5.8848 0.5899 0.1080 33 1 8.1565 2.1390 -0.6272 34 1 8.0296 2.0622 1.1466 35 1 7.3735 1.2567 3.6498 36 1 10.4013 0.9616 -0.3926 37 1 10.4433 -0.7315 0.3371 38 1 8.6682 -1.4867 -1.3108 39 1 8.6253 0.2060 -2.0413 40 1 4.8743 5.0918 0.0009 41 1 3.4090 7.0429 0.0010 42 1 0.9659 6.7772 0.0015 43 1 -0.0512 4.5653 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597609876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:20 Heat of formation + Delta-G solvation = 16.663350 kcal Electronic energy + Delta-G solvation = -27441.356528 eV Core-core repulsion = 23646.130290 eV Total energy + Delta-G solvation = -3795.226237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92127 -39.11181 -38.56830 -36.76188 -36.06690 -33.46234 -32.94921 -32.26077 -30.26370 -29.77954 -27.57604 -26.29055 -25.52310 -23.99574 -23.25368 -22.30273 -21.30791 -20.13577 -19.36978 -18.41266 -17.95953 -17.34663 -16.41592 -16.07106 -15.98909 -15.10482 -15.03296 -14.91889 -14.67912 -14.45922 -14.29403 -13.91547 -13.66603 -13.45039 -13.16320 -12.91209 -12.49420 -12.03402 -12.02083 -11.91924 -11.55482 -11.51618 -11.34117 -11.15267 -10.82819 -10.65815 -10.57677 -10.35166 -10.21971 -10.06409 -9.71436 -9.14254 -8.96889 -8.93513 -8.50895 -8.37914 -8.12376 -7.92985 -6.10711 -4.29137 0.26394 0.92798 1.85539 2.91196 2.98255 3.18052 3.27897 3.28601 3.55061 3.78725 4.21271 4.23305 4.26553 4.68968 4.81026 4.83907 5.02390 5.04230 5.19962 5.25387 5.29956 5.34827 5.40685 5.49927 5.60393 5.69211 5.79399 5.94710 5.96187 6.18367 6.22799 6.36426 6.44595 6.52892 6.55993 6.61882 6.63333 6.81134 6.89648 7.00875 7.19285 7.20757 7.41231 7.50707 7.85324 7.85747 8.21656 8.32664 8.72899 8.88684 9.35086 10.80070 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.004344 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.775769 B = 6444.629509 C = 7567.589705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.305 6.305 3 C 0.354 3.646 4 C -0.146 4.146 5 C -0.022 4.022 6 C 0.549 3.451 7 O -0.547 6.547 8 N -0.663 5.663 9 C 0.162 3.838 10 C 0.033 3.967 11 C -0.497 4.497 12 H 0.063 0.937 13 C 0.074 3.926 14 N -0.871 5.871 15 Si 0.892 3.108 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.196 4.196 20 C -0.211 4.211 21 C -0.100 4.100 22 C -0.073 4.073 23 C -0.142 4.142 24 C -0.090 4.090 25 C -0.116 4.116 26 C 0.163 3.837 27 N -0.539 5.539 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.154 0.846 32 H 0.402 0.598 33 H 0.029 0.971 34 H 0.118 0.882 35 H 0.264 0.736 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.167 0.833 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 4.259 -5.144 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.210 6.210 3 C 0.160 3.840 4 C -0.167 4.167 5 C -0.033 4.033 6 C 0.333 3.667 7 O -0.428 6.428 8 N -0.308 5.308 9 C 0.040 3.960 10 C 0.032 3.968 11 C -0.534 4.534 12 H 0.081 0.919 13 C -0.130 4.130 14 N -0.507 5.507 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.235 4.235 20 C -0.248 4.248 21 C -0.103 4.103 22 C -0.091 4.091 23 C -0.160 4.160 24 C -0.110 4.110 25 C -0.135 4.135 26 C 0.045 3.955 27 N -0.266 5.266 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.172 0.828 32 H 0.238 0.762 33 H 0.047 0.953 34 H 0.135 0.865 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.184 0.816 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.776 4.864 -5.041 14.570 hybrid contribution 0.129 -1.079 0.826 1.365 sum -12.647 3.785 -4.215 13.857 Atomic orbital electron populations 1.22855 0.77235 1.02846 1.02496 1.86262 1.22968 1.24565 1.87227 1.19716 0.88800 0.84752 0.90706 1.21485 0.92022 0.99217 1.04007 1.21592 0.94588 0.91881 0.95199 1.17703 0.84838 0.85241 0.78869 1.90550 1.72886 1.27151 1.52249 1.45684 1.09000 1.07709 1.68453 1.21234 0.76570 0.96439 1.01749 1.19225 0.92276 0.93407 0.91866 1.20548 1.42637 0.93750 0.96513 0.91905 1.24998 0.94481 0.95067 0.98459 1.69843 1.47973 1.12547 1.20327 0.86578 0.78799 0.81119 0.81607 1.20467 1.21102 1.19621 1.22940 0.94402 1.01215 1.04895 1.22969 1.07855 0.99763 0.94257 1.19528 0.92634 0.93693 1.04449 1.21896 1.03277 0.90257 0.93686 1.20993 0.93294 0.99238 1.02482 1.20900 0.95270 0.97010 0.97790 1.20594 0.99526 0.90276 1.03142 1.18294 0.89817 0.90166 0.97273 1.67083 1.39970 0.98119 1.21453 0.92257 0.88633 0.92236 0.82800 0.76220 0.95267 0.86467 0.92556 0.91381 0.90129 0.90520 0.91271 0.81591 0.85637 0.85662 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.35 101.05 1.05 1.48 16 2 O -0.31 -4.37 10.45 -18.46 -0.19 -4.56 16 3 C 0.35 5.65 7.49 -17.15 -0.13 5.52 16 4 C -0.15 -2.41 9.53 -38.74 -0.37 -2.78 16 5 C -0.02 -0.40 6.08 -102.50 -0.62 -1.02 16 6 C 0.55 11.18 7.77 -12.29 -0.10 11.08 16 7 O -0.55 -12.10 13.69 5.34 0.07 -12.02 16 8 N -0.66 -13.73 5.13 -61.23 -0.31 -14.05 16 9 C 0.16 3.66 4.63 -4.05 -0.02 3.64 16 10 C 0.03 0.74 2.06 -155.66 -0.32 0.42 16 11 C -0.50 -12.10 8.29 -34.44 -0.29 -12.38 16 12 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 13 C 0.07 1.83 5.31 -17.82 -0.09 1.73 16 14 N -0.87 -22.27 10.20 55.43 0.57 -21.70 16 15 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 19 C -0.20 -4.11 9.96 -26.69 -0.27 -4.37 16 20 C -0.21 -4.22 9.92 -26.69 -0.26 -4.49 16 21 C -0.10 -1.73 5.90 -104.72 -0.62 -2.35 16 22 C -0.07 -1.18 9.31 -39.63 -0.37 -1.55 16 23 C -0.14 -1.83 9.96 -39.88 -0.40 -2.23 16 24 C -0.09 -1.04 9.94 -39.95 -0.40 -1.44 16 25 C -0.12 -1.52 9.99 -39.44 -0.39 -1.91 16 26 C 0.16 2.61 6.62 -84.89 -0.56 2.05 16 27 N -0.54 -8.54 9.00 -11.13 -0.10 -8.64 16 28 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.15 2.37 6.56 -52.49 -0.34 2.02 16 32 H 0.40 7.99 6.11 -40.82 -0.25 7.74 16 33 H 0.03 0.65 8.05 -51.92 -0.42 0.23 16 34 H 0.12 2.99 5.92 -51.93 -0.31 2.69 16 35 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.17 2.95 5.17 -52.49 -0.27 2.68 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -27.62 361.43 -9.06 -36.68 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.36 Total: 12.83 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.16 Total: -8.60 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.15 Total: -44.39 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.12 Total: -16.58 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.62 -9.06 -36.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597609876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.342 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds