Wall clock time and date at job start Tue Mar 31 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35589 * 117.00134 * 2 1 4 4 C 1.40000 * 118.80813 * 180.02562 * 3 2 1 5 5 C 1.38742 * 119.44320 * 180.02562 * 4 3 2 6 6 C 1.47932 * 121.35797 * 179.97438 * 5 4 3 7 7 O 1.21534 * 120.00484 * 174.83286 * 6 5 4 8 8 N 1.34782 * 119.99735 * 354.83660 * 6 5 4 9 9 C 1.46499 * 120.00140 * 184.92715 * 8 6 5 10 10 C 1.52992 * 109.47177 * 184.86641 * 9 8 6 11 11 C 1.50694 * 115.55101 * 305.76529 * 10 9 8 12 12 H 1.08001 * 120.00147 * 144.26161 * 11 10 9 13 13 C 1.37878 * 120.00218 * 324.25831 * 11 10 9 14 14 N 1.31523 * 119.99628 * 3.00069 * 13 11 10 15 15 Si 1.86799 * 120.00455 * 182.99278 * 13 11 10 16 16 H 1.48501 * 109.46721 * 90.00413 * 15 13 11 17 17 H 1.48497 * 109.47396 * 210.00262 * 15 13 11 18 18 H 1.48492 * 109.47249 * 330.00745 * 15 13 11 19 19 C 1.53007 * 117.49847 * 160.09321 * 10 9 8 20 20 C 1.53006 * 117.49988 * 91.43720 * 10 9 8 21 21 C 1.46305 * 117.28867 * 359.97438 * 5 4 3 22 22 C 1.39939 * 121.54874 * 180.02562 * 21 5 4 23 23 C 1.36334 * 119.58478 * 179.97438 * 22 21 5 24 24 C 1.39292 * 120.80008 * 0.02859 * 23 22 21 25 25 C 1.36118 * 121.08425 * 359.97235 * 24 23 22 26 26 C 1.40632 * 119.72676 * 359.97438 * 25 24 23 27 27 N 1.31222 * 118.80750 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.46923 * 59.99503 * 1 2 3 29 29 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46810 * 299.99507 * 1 2 3 31 31 H 1.07996 * 120.28067 * 359.72190 * 4 3 2 32 32 H 0.96998 * 119.99930 * 4.91430 * 8 6 5 33 33 H 1.09008 * 109.46824 * 304.86652 * 9 8 6 34 34 H 1.08994 * 109.47229 * 64.86262 * 9 8 6 35 35 H 0.96996 * 119.99698 * 184.99977 * 14 13 11 36 36 H 1.08990 * 117.49740 * 0.02562 * 19 10 9 37 37 H 1.09004 * 117.49510 * 145.02131 * 19 10 9 38 38 H 1.09002 * 117.49866 * 214.97933 * 20 10 9 39 39 H 1.08996 * 117.49598 * 359.97421 * 20 10 9 40 40 H 1.08001 * 120.20993 * 359.95518 * 22 21 5 41 41 H 1.07998 * 119.59736 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.46062 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.14199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 3.4439 1.2522 -0.0005 5 6 4.0875 2.4814 0.0000 6 6 5.5637 2.5774 0.0000 7 8 6.1021 3.6628 -0.0943 8 7 6.3116 1.4610 0.1045 9 6 7.7690 1.5631 0.2133 10 6 8.3811 0.1611 0.1964 11 6 7.8365 -0.7984 1.2229 12 1 7.7269 -1.8448 0.9794 13 6 7.4780 -0.3403 2.4730 14 7 7.5557 0.9430 2.7502 15 14 6.8818 -1.5422 3.7727 16 1 8.0407 -2.0360 4.5590 17 1 5.9248 -0.8575 4.6784 18 1 6.2061 -2.6887 3.1139 19 6 9.8627 0.0415 -0.1664 20 6 8.7917 -0.4142 -1.1606 21 6 3.2467 3.6787 0.0005 22 6 3.8020 4.9632 0.0006 23 6 2.9808 6.0515 0.0005 24 6 1.5961 5.9001 0.0011 25 6 1.0242 4.6649 0.0011 26 6 1.8394 3.5190 0.0000 27 7 1.3072 2.2935 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0176 0.3373 0.0036 32 1 5.8848 0.5899 0.1080 33 1 8.1565 2.1390 -0.6272 34 1 8.0296 2.0622 1.1466 35 1 7.3735 1.2567 3.6498 36 1 10.4013 0.9616 -0.3926 37 1 10.4433 -0.7315 0.3371 38 1 8.6682 -1.4867 -1.3108 39 1 8.6253 0.2060 -2.0413 40 1 4.8743 5.0918 0.0009 41 1 3.4090 7.0429 0.0010 42 1 0.9659 6.7772 0.0015 43 1 -0.0512 4.5653 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597609876.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:19 Heat of formation + Delta-G solvation = 0.487071 kcal Electronic energy + Delta-G solvation = -27442.057984 eV Core-core repulsion = 23646.130290 eV Total energy + Delta-G solvation = -3795.927694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.13328 -40.53637 -39.79592 -38.46699 -37.19175 -35.05228 -34.30981 -34.09479 -31.39523 -30.92041 -28.65738 -27.88098 -27.30710 -25.28637 -24.40704 -23.52688 -22.95685 -21.58172 -21.11148 -19.72781 -19.08519 -18.72711 -17.95707 -17.47620 -17.15169 -16.75762 -16.51881 -16.09551 -16.05982 -15.94128 -15.61274 -15.30766 -14.93954 -14.77837 -14.62586 -14.15358 -14.06294 -13.66901 -13.34287 -13.02260 -12.95540 -12.89956 -12.62731 -12.61508 -12.40455 -12.30917 -12.04787 -11.68207 -11.58330 -11.52199 -11.34015 -10.91238 -10.71952 -10.45586 -10.16942 -9.81092 -9.61434 -9.13871 -7.98736 -6.22032 -0.99179 -0.23074 0.67230 1.41111 1.46551 1.52910 1.70042 1.87819 2.10593 2.29975 2.41055 3.02736 3.04352 3.12183 3.46748 3.57945 3.62297 3.74085 3.99246 4.13597 4.23606 4.32338 4.39556 4.44627 4.45190 4.51672 4.54497 4.64588 4.71192 4.73777 4.79148 4.85849 4.96978 5.08542 5.13002 5.27659 5.31324 5.44629 5.50263 5.53839 5.59306 5.75241 5.84650 5.94968 6.11652 6.35651 6.63922 6.66700 6.85852 7.27209 7.43439 8.89101 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.004344 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.775769 B = 6444.629509 C = 7567.589705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.314 6.314 3 C 0.343 3.657 4 C -0.141 4.141 5 C -0.046 4.046 6 C 0.548 3.452 7 O -0.571 6.571 8 N -0.663 5.663 9 C 0.175 3.825 10 C 0.005 3.995 11 C -0.502 4.502 12 H 0.060 0.940 13 C 0.039 3.961 14 N -0.892 5.892 15 Si 0.942 3.058 16 H -0.280 1.280 17 H -0.293 1.293 18 H -0.263 1.263 19 C -0.195 4.195 20 C -0.188 4.188 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.077 4.077 25 C -0.114 4.114 26 C 0.143 3.857 27 N -0.530 5.530 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.059 0.941 31 H 0.158 0.842 32 H 0.405 0.595 33 H 0.027 0.973 34 H 0.085 0.915 35 H 0.258 0.742 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.624 4.588 -5.700 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.219 6.219 3 C 0.149 3.851 4 C -0.163 4.163 5 C -0.057 4.057 6 C 0.334 3.666 7 O -0.454 6.454 8 N -0.309 5.309 9 C 0.052 3.948 10 C 0.005 3.995 11 C -0.539 4.539 12 H 0.078 0.922 13 C -0.163 4.163 14 N -0.529 5.529 15 Si 0.769 3.231 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.188 1.188 19 C -0.234 4.234 20 C -0.225 4.225 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.097 4.097 25 C -0.133 4.133 26 C 0.024 3.976 27 N -0.258 5.258 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.077 0.923 31 H 0.176 0.824 32 H 0.241 0.759 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.159 0.841 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.106 5.167 -5.610 16.922 hybrid contribution 0.777 -1.096 0.964 1.654 sum -14.329 4.071 -4.646 15.604 Atomic orbital electron populations 1.23155 0.75179 1.04968 1.02652 1.86253 1.25001 1.23623 1.87027 1.19734 0.88643 0.85441 0.91264 1.21547 0.92791 0.98792 1.03178 1.21397 0.93156 0.93289 0.97840 1.18072 0.86007 0.84642 0.77868 1.90534 1.73800 1.27890 1.53153 1.45597 1.08394 1.08045 1.68873 1.20901 0.77715 0.96325 0.99904 1.19269 0.93517 0.93259 0.93497 1.20724 1.42357 0.93847 0.97014 0.92172 1.25525 0.94833 0.96016 0.99927 1.70014 1.49146 1.13706 1.20042 0.85782 0.78041 0.79686 0.79595 1.20614 1.21910 1.18765 1.22960 0.93696 1.01670 1.05035 1.22961 1.05716 1.00333 0.93469 1.19713 0.93409 0.93688 1.05159 1.21771 1.02674 0.91224 0.96966 1.21385 0.93977 0.99405 0.99387 1.21367 0.94866 0.98069 0.95354 1.20989 1.00603 0.89723 1.01961 1.18715 0.89598 0.91193 0.98062 1.67149 1.39723 0.98121 1.20792 0.91828 0.85608 0.92266 0.82403 0.75903 0.95442 0.89713 0.93259 0.90445 0.90305 0.89697 0.89847 0.84051 0.82823 0.81077 0.82537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.35 113.37 1.17 1.84 16 2 O -0.31 -8.70 10.45 -88.98 -0.93 -9.63 16 3 C 0.34 10.87 7.49 85.21 0.64 11.51 16 4 C -0.14 -4.81 9.53 22.82 0.22 -4.59 16 5 C -0.05 -1.75 6.08 -18.49 -0.11 -1.86 16 6 C 0.55 23.49 7.77 86.81 0.67 24.17 16 7 O -0.57 -26.76 13.69 -3.82 -0.05 -26.81 16 8 N -0.66 -28.61 5.13 -465.90 -2.39 -31.00 16 9 C 0.17 8.15 4.63 86.38 0.40 8.55 16 10 C 0.01 0.24 2.06 -52.93 -0.11 0.13 16 11 C -0.50 -24.56 8.29 25.60 0.21 -24.34 16 12 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 13 C 0.04 1.92 5.31 84.65 0.45 2.37 16 14 N -0.89 -47.03 10.20 21.45 0.22 -46.81 16 15 Si 0.94 40.66 29.54 68.60 2.03 42.69 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 19 C -0.20 -8.08 9.96 30.62 0.30 -7.77 16 20 C -0.19 -7.30 9.92 30.62 0.30 -6.99 16 21 C -0.12 -4.10 5.90 -19.93 -0.12 -4.22 16 22 C -0.11 -3.54 9.31 22.24 0.21 -3.33 16 23 C -0.12 -2.92 9.96 22.08 0.22 -2.70 16 24 C -0.08 -1.48 9.94 22.03 0.22 -1.26 16 25 C -0.11 -2.63 9.99 22.36 0.22 -2.41 16 26 C 0.14 4.43 6.62 40.30 0.27 4.69 16 27 N -0.53 -16.28 9.00 -302.55 -2.72 -19.00 16 28 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 29 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 31 H 0.16 5.03 6.56 -2.91 -0.02 5.02 16 32 H 0.40 16.68 6.11 -92.71 -0.57 16.11 16 33 H 0.03 1.26 8.05 -2.38 -0.02 1.24 16 34 H 0.09 4.55 5.92 -2.39 -0.01 4.53 16 35 H 0.26 13.45 8.32 -92.71 -0.77 12.68 16 36 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.14 5.32 5.17 -2.91 -0.02 5.31 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 42 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -61.19 361.43 1.81 -59.38 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.49 Total: 37.40 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 5.17 Total: -6.22 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -4.89 Total: -96.81 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.98 Total: -36.43 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -61.19 1.81 -59.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597609876.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.867 kcal (2) G-P(sol) polarization free energy of solvation -61.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds