Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00282 * 3 2 1 5 5 H 1.48506 * 109.46952 * 30.00190 * 3 2 1 6 6 H 1.48496 * 109.47162 * 150.00505 * 3 2 1 7 7 C 1.37877 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00569 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99739 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00089 * 170.00061 * 10 9 7 12 12 C 1.53230 * 109.33932 * 187.25638 * 11 10 9 13 13 N 1.47081 * 108.52329 * 306.17038 * 12 11 10 14 14 C 1.34778 * 120.87945 * 231.19170 * 13 12 11 15 15 O 1.21499 * 119.99831 * 180.56306 * 14 13 12 16 16 C 1.48350 * 120.00229 * 0.56097 * 14 13 12 17 17 C 1.40178 * 119.20488 * 158.88345 * 16 14 13 18 18 C 1.36621 * 119.70814 * 179.97438 * 17 16 14 19 19 C 1.40596 * 118.20834 * 0.02562 * 18 17 16 20 20 C 1.40738 * 121.38496 * 180.02562 * 19 18 17 21 21 C 1.36587 * 118.13122 * 179.97438 * 20 19 18 22 22 C 1.39427 * 119.85280 * 359.97438 * 21 20 19 23 23 N 1.31010 * 121.83380 * 359.97438 * 22 21 20 24 24 C 1.33862 * 121.42756 * 359.97438 * 23 22 21 25 25 N 1.31885 * 119.20628 * 338.88477 * 16 14 13 26 26 C 1.47080 * 118.23654 * 51.45342 * 13 12 11 27 27 C 1.46900 * 110.99782 * 294.30409 * 10 9 7 28 28 H 0.97001 * 120.00155 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47105 * 60.00185 * 9 7 2 30 30 H 1.08996 * 109.47588 * 300.00178 * 9 7 2 31 31 H 1.09002 * 109.49205 * 67.29247 * 11 10 9 32 32 H 1.09008 * 109.49018 * 307.21352 * 11 10 9 33 33 H 1.09003 * 109.63287 * 186.45997 * 12 11 10 34 34 H 1.09005 * 109.63234 * 65.87773 * 12 11 10 35 35 H 1.08000 * 120.14270 * 0.02562 * 17 16 14 36 36 H 1.07993 * 120.89294 * 180.27290 * 18 17 16 37 37 H 1.07997 * 120.93589 * 359.95836 * 20 19 18 38 38 H 1.08002 * 120.06930 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.08120 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.62319 * 68.26056 * 26 13 12 41 41 H 1.08998 * 109.62719 * 188.83601 * 26 13 12 42 42 H 1.08998 * 109.49108 * 292.70388 * 27 10 9 43 43 H 1.08991 * 109.49583 * 52.78822 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5214 -4.8936 0.2363 12 6 2.5641 -6.0033 0.4079 13 7 3.4611 -5.9858 -0.7576 14 6 3.7109 -7.1117 -1.4552 15 8 4.4626 -7.0810 -2.4093 16 6 3.0680 -8.3883 -1.0582 17 6 2.9609 -9.4218 -1.9991 18 6 2.3712 -10.6021 -1.6443 19 6 1.8877 -10.7349 -0.3308 20 6 1.2693 -11.9213 0.1060 21 6 0.8245 -11.9783 1.3962 22 6 0.9909 -10.8786 2.2369 23 7 1.5681 -9.7763 1.8268 24 6 2.0279 -9.6530 0.5757 25 7 2.6110 -8.5236 0.1716 26 6 4.0829 -4.7084 -1.1381 27 6 2.9758 -3.6485 -1.2523 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 0.8792 -5.1261 -0.6131 32 1 0.9169 -4.8196 1.1404 33 1 2.0637 -6.9696 0.4703 34 1 3.1405 -5.8270 1.3161 35 1 3.3436 -9.2859 -2.9999 36 1 2.2825 -11.4125 -2.3526 37 1 1.1495 -12.7628 -0.5602 38 1 0.3456 -12.8736 1.7644 39 1 0.6341 -10.9371 3.2546 40 1 4.8025 -4.4101 -0.3756 41 1 4.5870 -4.8182 -2.0982 42 1 2.3133 -3.8983 -2.0810 43 1 3.4261 -2.6716 -1.4278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = 71.966524 kcal Electronic energy + Delta-G solvation = -26995.736979 eV Core-core repulsion = 23235.201618 eV Total energy + Delta-G solvation = -3760.535361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70195 -39.99313 -38.03491 -37.33160 -34.81069 -34.17190 -32.39287 -31.65786 -31.34354 -30.45630 -28.31543 -26.22902 -25.18091 -24.63055 -23.19266 -22.99434 -22.03660 -21.03443 -19.51930 -18.86177 -17.89023 -17.41249 -16.47455 -16.33451 -15.86612 -15.76288 -15.19373 -14.82217 -14.73666 -14.59711 -14.36675 -14.15229 -13.78772 -13.60826 -13.54473 -13.42042 -12.89333 -12.53286 -12.32157 -12.14342 -11.92936 -11.49224 -11.26054 -11.14505 -10.84340 -10.74227 -10.67160 -10.50157 -10.46733 -10.07818 -9.83852 -9.36304 -9.32807 -9.27480 -8.88385 -8.46884 -8.38866 -7.24931 -6.02074 -4.03687 -0.32409 0.11636 1.45668 2.07357 2.88707 2.94550 3.33036 3.35422 3.39255 3.43863 3.75038 3.97364 4.16836 4.19767 4.32547 4.39497 4.43696 4.61946 4.81484 4.91529 4.96785 5.21714 5.32494 5.34354 5.44542 5.47394 5.56103 5.68914 5.74558 5.75158 5.81965 5.92836 6.01157 6.11572 6.36667 6.42919 6.53141 6.59732 6.76175 6.92201 7.28918 7.33765 7.50717 7.68856 7.79903 8.07622 8.11553 8.18531 8.53811 9.03751 9.60675 11.08803 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.002760 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.435862 B =10141.354466 C =11094.524589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.040 3.960 12 C 0.085 3.915 13 N -0.578 5.578 14 C 0.562 3.438 15 O -0.539 6.539 16 C 0.153 3.847 17 C -0.129 4.129 18 C -0.046 4.046 19 C -0.144 4.144 20 C -0.046 4.046 21 C -0.174 4.174 22 C 0.160 3.840 23 N -0.456 5.456 24 C 0.296 3.704 25 N -0.423 5.423 26 C 0.112 3.888 27 C 0.052 3.948 28 H 0.261 0.739 29 H -0.010 1.010 30 H 0.032 0.968 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.170 0.830 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.024 0.976 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -27.865 -0.372 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.090 4.090 12 C -0.037 4.037 13 N -0.308 5.308 14 C 0.347 3.653 15 O -0.417 6.417 16 C -0.003 4.003 17 C -0.150 4.150 18 C -0.073 4.073 19 C -0.149 4.149 20 C -0.073 4.073 21 C -0.194 4.194 22 C -0.018 4.018 23 N -0.165 5.165 24 C 0.059 3.941 25 N -0.136 5.136 26 C -0.010 4.010 27 C -0.077 4.077 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.187 0.813 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.042 0.958 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.523 -26.152 0.675 26.282 hybrid contribution -0.572 -0.492 -1.642 1.807 sum 1.951 -26.644 -0.967 26.733 Atomic orbital electron populations 1.69959 1.06097 1.26790 1.50979 1.24994 0.94860 0.99346 0.95411 0.86496 0.79834 0.83063 0.78025 1.20747 1.21279 1.19716 1.21157 0.93506 0.89890 1.50104 0.91774 1.19723 0.90027 0.87261 0.96130 1.62106 1.28056 1.02767 1.33203 1.22469 0.95190 0.90744 1.00567 1.23014 0.91883 1.01840 0.86948 1.48182 1.45109 1.07973 1.29543 1.17868 0.81844 0.82766 0.82828 1.90772 1.37453 1.85131 1.28295 1.21595 0.94175 0.95269 0.89293 1.21817 0.98855 0.92587 1.01694 1.21462 0.93811 0.97638 0.94341 1.19727 1.02126 0.96813 0.96272 1.21500 0.93446 0.96030 0.96285 1.22073 1.01710 1.00868 0.94770 1.23185 0.91194 0.87116 1.00256 1.67675 1.09477 1.25352 1.13969 1.19437 0.95838 0.88868 0.90005 1.67693 1.08836 1.21034 1.16065 1.22096 0.96028 0.81302 1.01590 1.22409 0.95035 0.99006 0.91229 0.92924 0.99224 0.95039 0.96074 0.90110 0.85011 0.90524 0.82657 0.83218 0.83825 0.83758 0.81320 0.90374 0.89226 0.95756 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.29 8.41 -34.44 -0.29 -14.58 16 8 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 9 C 0.19 5.11 4.72 -4.97 -0.02 5.08 16 10 N -0.54 -11.83 4.62 -235.47 -1.09 -12.92 16 11 C 0.04 0.76 5.62 -3.71 -0.02 0.74 16 12 C 0.09 1.43 6.10 -3.61 -0.02 1.41 16 13 N -0.58 -9.81 3.00 -173.11 -0.52 -10.33 16 14 C 0.56 9.17 7.63 -12.10 -0.09 9.08 16 15 O -0.54 -9.66 15.93 5.37 0.09 -9.57 16 16 C 0.15 2.12 6.48 -82.95 -0.54 1.58 16 17 C -0.13 -1.36 9.53 -39.44 -0.38 -1.73 16 18 C -0.05 -0.37 9.89 -39.28 -0.39 -0.75 16 19 C -0.14 -1.35 5.75 -106.68 -0.61 -1.96 16 20 C -0.05 -0.27 9.90 -39.23 -0.39 -0.66 16 21 C -0.17 -0.91 10.04 -39.74 -0.40 -1.31 16 22 C 0.16 1.19 11.14 -17.46 -0.19 1.00 16 23 N -0.46 -5.46 10.43 -12.60 -0.13 -5.59 16 24 C 0.30 3.74 7.62 -157.91 -1.20 2.53 16 25 N -0.42 -6.06 6.36 -9.19 -0.06 -6.12 16 26 C 0.11 1.93 6.63 -3.36 -0.02 1.90 16 27 C 0.05 1.05 5.47 -3.46 -0.02 1.03 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 29 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 30 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.51 7.99 -51.92 -0.41 1.10 16 33 H 0.13 2.14 4.10 -76.73 -0.31 1.82 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.16 1.45 7.75 -52.49 -0.41 1.04 16 36 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 38 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 39 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.48 7.06 -51.93 -0.37 1.11 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 2.05 6.67 -51.93 -0.35 1.71 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -34.67 354.77 -10.91 -45.58 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.58 Total: -1.80 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -4.69 Total: 4.83 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -1.06 Total: -61.10 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.67 -10.91 -45.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.545 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds