Wall clock time and date at job start Tue Mar 31 2020 14:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00282 * 3 2 1 5 5 H 1.48506 * 109.46952 * 30.00190 * 3 2 1 6 6 H 1.48496 * 109.47162 * 150.00505 * 3 2 1 7 7 C 1.37877 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00569 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99739 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00089 * 170.00061 * 10 9 7 12 12 C 1.53230 * 109.33932 * 187.25638 * 11 10 9 13 13 N 1.47081 * 108.52329 * 306.17038 * 12 11 10 14 14 C 1.34778 * 120.87945 * 231.19170 * 13 12 11 15 15 O 1.21499 * 119.99831 * 180.56306 * 14 13 12 16 16 C 1.48350 * 120.00229 * 0.56097 * 14 13 12 17 17 C 1.40178 * 119.20488 * 158.88345 * 16 14 13 18 18 C 1.36621 * 119.70814 * 179.97438 * 17 16 14 19 19 C 1.40596 * 118.20834 * 0.02562 * 18 17 16 20 20 C 1.40738 * 121.38496 * 180.02562 * 19 18 17 21 21 C 1.36587 * 118.13122 * 179.97438 * 20 19 18 22 22 C 1.39427 * 119.85280 * 359.97438 * 21 20 19 23 23 N 1.31010 * 121.83380 * 359.97438 * 22 21 20 24 24 C 1.33862 * 121.42756 * 359.97438 * 23 22 21 25 25 N 1.31885 * 119.20628 * 338.88477 * 16 14 13 26 26 C 1.47080 * 118.23654 * 51.45342 * 13 12 11 27 27 C 1.46900 * 110.99782 * 294.30409 * 10 9 7 28 28 H 0.97001 * 120.00155 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47105 * 60.00185 * 9 7 2 30 30 H 1.08996 * 109.47588 * 300.00178 * 9 7 2 31 31 H 1.09002 * 109.49205 * 67.29247 * 11 10 9 32 32 H 1.09008 * 109.49018 * 307.21352 * 11 10 9 33 33 H 1.09003 * 109.63287 * 186.45997 * 12 11 10 34 34 H 1.09005 * 109.63234 * 65.87773 * 12 11 10 35 35 H 1.08000 * 120.14270 * 0.02562 * 17 16 14 36 36 H 1.07993 * 120.89294 * 180.27290 * 18 17 16 37 37 H 1.07997 * 120.93589 * 359.95836 * 20 19 18 38 38 H 1.08002 * 120.06930 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.08120 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.62319 * 68.26056 * 26 13 12 41 41 H 1.08998 * 109.62719 * 188.83601 * 26 13 12 42 42 H 1.08998 * 109.49108 * 292.70388 * 27 10 9 43 43 H 1.08991 * 109.49583 * 52.78822 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5214 -4.8936 0.2363 12 6 2.5641 -6.0033 0.4079 13 7 3.4611 -5.9858 -0.7576 14 6 3.7109 -7.1117 -1.4552 15 8 4.4626 -7.0810 -2.4093 16 6 3.0680 -8.3883 -1.0582 17 6 2.9609 -9.4218 -1.9991 18 6 2.3712 -10.6021 -1.6443 19 6 1.8877 -10.7349 -0.3308 20 6 1.2693 -11.9213 0.1060 21 6 0.8245 -11.9783 1.3962 22 6 0.9909 -10.8786 2.2369 23 7 1.5681 -9.7763 1.8268 24 6 2.0279 -9.6530 0.5757 25 7 2.6110 -8.5236 0.1716 26 6 4.0829 -4.7084 -1.1381 27 6 2.9758 -3.6485 -1.2523 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 0.8792 -5.1261 -0.6131 32 1 0.9169 -4.8196 1.1404 33 1 2.0637 -6.9696 0.4703 34 1 3.1405 -5.8270 1.3161 35 1 3.3436 -9.2859 -2.9999 36 1 2.2825 -11.4125 -2.3526 37 1 1.1495 -12.7628 -0.5602 38 1 0.3456 -12.8736 1.7644 39 1 0.6341 -10.9371 3.2546 40 1 4.8025 -4.4101 -0.3756 41 1 4.5870 -4.8182 -2.0982 42 1 2.3133 -3.8983 -2.0810 43 1 3.4261 -2.6716 -1.4278 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:01 Heat of formation + Delta-G solvation = 48.181139 kcal Electronic energy + Delta-G solvation = -26996.768391 eV Core-core repulsion = 23235.201618 eV Total energy + Delta-G solvation = -3761.566772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48903 -41.16482 -39.24513 -38.50092 -36.17959 -35.18274 -34.39997 -32.59727 -32.09780 -31.73524 -30.09163 -27.64146 -26.50593 -25.42566 -24.56268 -24.03505 -23.50565 -22.47972 -20.77420 -19.70680 -18.94954 -18.53905 -18.11550 -17.49883 -17.01612 -16.86843 -16.65177 -16.08365 -15.84610 -15.77969 -15.50059 -15.47326 -15.16512 -15.10734 -14.57038 -14.35805 -14.04734 -13.98624 -13.68090 -13.19969 -13.11008 -12.88384 -12.77868 -12.61207 -12.51991 -12.38194 -12.25446 -12.10640 -11.84605 -11.67621 -11.39907 -10.96869 -10.64090 -10.11862 -9.99022 -9.85145 -9.79186 -9.11446 -8.22302 -6.32895 -1.02028 -0.55401 0.81031 1.23629 1.41088 1.42583 1.54477 1.70523 1.99611 2.38921 2.48641 2.99523 3.09842 3.21174 3.23505 3.37232 3.61795 3.71432 3.90474 3.94489 3.99315 4.04703 4.15723 4.20622 4.31106 4.37270 4.47891 4.53336 4.64356 4.75396 4.80064 4.87421 4.91473 4.96127 5.03519 5.12166 5.14218 5.17413 5.24120 5.41037 5.61337 5.63275 5.99280 6.07531 6.19076 6.27925 6.52445 6.80107 6.82301 7.05239 7.36892 8.89203 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.002760 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.435862 B =10141.354466 C =11094.524589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.540 5.540 11 C 0.042 3.958 12 C 0.101 3.899 13 N -0.588 5.588 14 C 0.562 3.438 15 O -0.560 6.560 16 C 0.127 3.873 17 C -0.145 4.145 18 C -0.019 4.019 19 C -0.153 4.153 20 C -0.039 4.039 21 C -0.162 4.162 22 C 0.160 3.840 23 N -0.510 5.510 24 C 0.266 3.734 25 N -0.457 5.457 26 C 0.122 3.878 27 C 0.057 3.943 28 H 0.265 0.735 29 H -0.041 1.041 30 H 0.007 0.993 31 H 0.013 0.987 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.199 0.801 37 H 0.189 0.811 38 H 0.189 0.811 39 H 0.197 0.803 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.013 0.987 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -31.244 -0.427 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.265 5.265 11 C -0.087 4.087 12 C -0.021 4.021 13 N -0.318 5.318 14 C 0.349 3.651 15 O -0.438 6.438 16 C -0.027 4.027 17 C -0.165 4.165 18 C -0.045 4.045 19 C -0.158 4.158 20 C -0.066 4.066 21 C -0.181 4.181 22 C -0.016 4.016 23 N -0.220 5.220 24 C 0.029 3.971 25 N -0.171 5.171 26 C 0.000 4.000 27 C -0.072 4.072 28 H 0.074 0.926 29 H -0.024 1.024 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.091 0.909 35 H 0.181 0.819 36 H 0.216 0.784 37 H 0.206 0.794 38 H 0.206 0.794 39 H 0.213 0.787 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.031 0.969 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.661 -29.559 0.614 29.685 hybrid contribution -0.732 0.304 -1.516 1.711 sum 1.930 -29.255 -0.902 29.333 Atomic orbital electron populations 1.70092 1.07828 1.27984 1.51674 1.25944 0.95752 1.03310 0.94669 0.85341 0.78568 0.78022 0.78442 1.19775 1.20729 1.18768 1.21450 0.93752 0.90796 1.50228 0.91513 1.19381 0.90032 0.88862 0.93417 1.62051 1.27205 1.02891 1.34332 1.22524 0.95905 0.90141 1.00115 1.22906 0.91161 1.01277 0.86760 1.48223 1.45497 1.08218 1.29863 1.18316 0.81263 0.83442 0.82063 1.90734 1.38310 1.85740 1.29060 1.21261 0.96203 0.94874 0.90380 1.21922 1.00248 0.92938 1.01426 1.21976 0.90670 0.97451 0.94443 1.20038 1.02291 0.97203 0.96277 1.22032 0.91634 0.95641 0.97246 1.22554 1.00170 1.01247 0.94128 1.23879 0.89198 0.86638 1.01874 1.67635 1.11968 1.27983 1.14449 1.19658 0.96778 0.89508 0.91187 1.67284 1.10171 1.23179 1.16454 1.21924 0.94851 0.80887 1.02360 1.22364 0.95287 0.99630 0.89879 0.92635 1.02355 0.97512 0.96867 0.90150 0.83785 0.90923 0.81947 0.78353 0.79413 0.79397 0.78666 0.89753 0.88307 0.96884 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.07 5.46 84.66 0.46 0.54 16 3 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.52 -30.39 8.41 25.60 0.22 -30.18 16 8 H 0.07 3.76 7.13 -2.91 -0.02 3.74 16 9 C 0.21 11.67 4.72 85.56 0.40 12.07 16 10 N -0.54 -25.08 4.62 -898.89 -4.15 -29.23 16 11 C 0.04 1.71 5.62 86.38 0.49 2.20 16 12 C 0.10 3.57 6.10 86.35 0.53 4.09 16 13 N -0.59 -20.76 3.00 -819.88 -2.46 -23.22 16 14 C 0.56 19.00 7.63 86.94 0.66 19.66 16 15 O -0.56 -20.53 15.93 -3.71 -0.06 -20.59 16 16 C 0.13 3.60 6.48 42.30 0.27 3.87 16 17 C -0.14 -2.91 9.53 22.36 0.21 -2.70 16 18 C -0.02 -0.25 9.89 22.47 0.22 -0.02 16 19 C -0.15 -2.43 5.75 -21.20 -0.12 -2.55 16 20 C -0.04 -0.27 9.90 22.49 0.22 -0.05 16 21 C -0.16 -0.93 10.04 22.17 0.22 -0.70 16 22 C 0.16 1.99 11.14 85.10 0.95 2.94 16 23 N -0.51 -11.96 10.43 -193.77 -2.02 -13.98 16 24 C 0.27 6.60 7.62 135.12 1.03 7.63 16 25 N -0.46 -13.48 6.36 -182.98 -1.16 -14.64 16 26 C 0.12 4.35 6.63 86.50 0.57 4.92 16 27 C 0.06 2.41 5.47 86.54 0.47 2.88 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 30 H 0.01 0.41 7.97 -2.39 -0.02 0.39 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 3.21 7.99 -2.38 -0.02 3.19 16 33 H 0.15 4.94 4.10 -51.36 -0.21 4.72 16 34 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.16 2.89 7.75 -2.91 -0.02 2.87 16 36 H 0.20 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.19 -0.35 8.06 -2.91 -0.02 -0.37 16 38 H 0.19 -0.54 8.06 -2.91 -0.02 -0.57 16 39 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.10 3.35 7.06 -2.39 -0.02 3.33 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 3.83 6.67 -2.39 -0.02 3.81 16 Total: -1.00 -80.75 354.77 0.10 -80.65 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.83 Total: 6.52 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 6.81 Total: 24.60 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -9.52 Total: -138.26 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.06 Total: -20.59 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -80.75 0.10 -80.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.833 kcal (2) G-P(sol) polarization free energy of solvation -80.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds