Wall clock time and date at job start Tue Mar 31 2020 15:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47226 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47054 * 299.99686 * 3 2 1 6 6 H 1.48503 * 109.47370 * 59.99819 * 3 2 1 7 7 C 1.37873 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00124 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47368 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99804 * 169.99932 * 10 9 7 12 12 C 1.53245 * 109.33522 * 187.25545 * 11 10 9 13 13 N 1.47079 * 108.52282 * 306.17075 * 12 11 10 14 14 C 1.34774 * 120.87914 * 231.18745 * 13 12 11 15 15 O 1.21596 * 119.99675 * 174.72132 * 14 13 12 16 16 C 1.47504 * 120.00193 * 354.99403 * 14 13 12 17 17 C 1.38675 * 120.34218 * 325.89176 * 16 14 13 18 18 C 1.38982 * 120.63687 * 180.02562 * 17 16 14 19 19 C 1.36223 * 121.13956 * 0.02562 * 18 17 16 20 20 C 1.40687 * 120.17055 * 359.97438 * 19 18 17 21 21 N 1.33762 * 120.97510 * 179.97438 * 20 19 18 22 22 C 1.31330 * 119.73167 * 180.02562 * 21 20 19 23 23 C 1.39645 * 120.68092 * 359.97029 * 22 21 20 24 24 N 1.31447 * 120.64491 * 0.02562 * 23 22 21 25 25 C 1.33495 * 119.72413 * 359.74519 * 24 23 22 26 26 C 1.47080 * 118.23449 * 51.45970 * 13 12 11 27 27 C 1.46894 * 110.99924 * 294.30271 * 10 9 7 28 28 H 0.97006 * 119.99216 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47166 * 59.99380 * 9 7 2 30 30 H 1.08998 * 109.47591 * 299.99899 * 9 7 2 31 31 H 1.08998 * 109.49481 * 67.29811 * 11 10 9 32 32 H 1.09001 * 109.51413 * 307.22606 * 11 10 9 33 33 H 1.09004 * 109.62488 * 186.46106 * 12 11 10 34 34 H 1.09003 * 109.62630 * 65.88469 * 12 11 10 35 35 H 1.07999 * 119.68241 * 0.02562 * 17 16 14 36 36 H 1.07997 * 119.43266 * 180.02562 * 18 17 16 37 37 H 1.07998 * 119.91296 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.65803 * 179.97438 * 22 21 20 39 39 H 1.08006 * 119.67959 * 180.02562 * 23 22 21 40 40 H 1.08994 * 109.63082 * 68.25287 * 26 13 12 41 41 H 1.08999 * 109.62480 * 188.83042 * 26 13 12 42 42 H 1.08997 * 109.49290 * 292.70179 * 27 10 9 43 43 H 1.08997 * 109.49224 * 52.78892 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5209 -4.8935 0.2387 12 6 2.5634 -6.0033 0.4115 13 7 3.4613 -5.9864 -0.7533 14 6 3.7115 -7.1126 -1.4501 15 8 4.3785 -7.0635 -2.4656 16 6 3.1714 -8.4036 -0.9841 17 6 3.0481 -8.6627 0.3726 18 6 2.5404 -9.8772 0.8185 19 6 2.1518 -10.8433 -0.0598 20 6 2.2590 -10.6239 -1.4453 21 7 1.8827 -11.5614 -2.3220 22 6 1.9939 -11.3309 -3.6101 23 6 2.5008 -10.1157 -4.0753 24 7 2.8767 -9.1798 -3.2322 25 6 2.7685 -9.3902 -1.9184 26 6 4.0835 -4.7092 -1.1337 27 6 2.9765 -3.6492 -1.2493 28 1 -0.4849 0.8402 -0.0004 29 1 0.6245 -2.5570 -0.8896 30 1 0.6239 -2.5568 0.8903 31 1 0.8793 -5.1264 -0.6111 32 1 0.9154 -4.8193 1.1420 33 1 2.0627 -6.9695 0.4740 34 1 3.1390 -5.8266 1.3202 35 1 3.3495 -7.9135 1.0897 36 1 2.4525 -10.0583 1.8795 37 1 1.7604 -11.7801 0.3085 38 1 1.6901 -12.0888 -4.3168 39 1 2.5848 -9.9431 -5.1381 40 1 4.8024 -4.4105 -0.3709 41 1 4.5884 -4.8194 -2.0934 42 1 2.3147 -3.8994 -2.0784 43 1 3.4271 -2.6724 -1.4249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:52 Heat of formation + Delta-G solvation = 66.751253 kcal Electronic energy + Delta-G solvation = -27182.332488 eV Core-core repulsion = 23421.570976 eV Total energy + Delta-G solvation = -3760.761512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79239 -39.98622 -37.71077 -37.34589 -34.95814 -34.47369 -32.47026 -31.60051 -31.16852 -30.29621 -28.24611 -26.02526 -25.40578 -24.64746 -23.83562 -22.97620 -21.93162 -20.60738 -19.36090 -19.12893 -18.04967 -17.13440 -16.61366 -16.39858 -15.79303 -15.50760 -15.36664 -14.92745 -14.79353 -14.51699 -14.40078 -14.30474 -13.84166 -13.66455 -13.52223 -12.86850 -12.60863 -12.38302 -12.22512 -12.13042 -11.95095 -11.84094 -11.63559 -11.28923 -11.17252 -10.87110 -10.75368 -10.60621 -10.52770 -9.94925 -9.86576 -9.33102 -9.27197 -9.21101 -8.86519 -8.50826 -8.42417 -7.35358 -6.07563 -4.09324 -0.28302 0.22165 1.42584 2.33062 2.87788 3.11241 3.28628 3.36329 3.40803 3.68484 3.75128 3.83720 3.94942 4.34895 4.38573 4.38716 4.60412 4.70173 4.76628 4.88845 4.92976 5.18508 5.26078 5.27426 5.35416 5.43579 5.47703 5.59281 5.62693 5.77812 5.80031 5.82435 5.96807 5.98579 6.17317 6.24025 6.38458 6.53263 6.72259 6.97619 7.19823 7.26524 7.44205 7.52480 7.73286 7.98873 8.09908 8.26605 8.45773 8.98256 9.55422 11.03342 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023573 B = 0.002708 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.503079 B =10335.476124 C =10633.921770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.039 3.961 12 C 0.098 3.902 13 N -0.603 5.603 14 C 0.557 3.443 15 O -0.514 6.514 16 C -0.091 4.091 17 C -0.069 4.069 18 C -0.105 4.105 19 C -0.063 4.063 20 C 0.071 3.929 21 N -0.425 5.425 22 C 0.075 3.925 23 C 0.077 3.923 24 N -0.398 5.398 25 C 0.113 3.887 26 C 0.117 3.883 27 C 0.051 3.949 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.025 0.975 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.878 -23.698 -0.723 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.025 4.025 13 N -0.337 5.337 14 C 0.345 3.655 15 O -0.390 6.390 16 C -0.095 4.095 17 C -0.089 4.089 18 C -0.125 4.125 19 C -0.083 4.083 20 C -0.053 4.053 21 N -0.139 5.139 22 C -0.101 4.101 23 C -0.098 4.098 24 N -0.111 5.111 25 C -0.013 4.013 26 C -0.004 4.004 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.170 0.830 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.193 0.807 39 H 0.193 0.807 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.044 0.956 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.450 -23.365 -0.677 23.795 hybrid contribution -0.427 0.807 -0.712 1.158 sum 4.023 -22.558 -1.390 22.956 Atomic orbital electron populations 1.69973 1.06100 1.26747 1.50927 1.24996 0.94870 0.99393 0.95352 0.86437 0.80093 0.83350 0.77522 1.19591 1.21114 1.20998 1.21175 0.93540 0.89830 1.50168 0.91705 1.19732 0.90005 0.87223 0.96181 1.62104 1.27884 1.02489 1.33532 1.22406 0.94810 0.90851 1.00954 1.22420 0.92109 0.99621 0.88352 1.48112 1.46646 1.08502 1.30458 1.17881 0.81104 0.83046 0.83513 1.90797 1.39310 1.85872 1.23014 1.19887 1.02048 0.94812 0.92775 1.21903 0.95062 0.97411 0.94516 1.20979 0.98056 0.92602 1.00887 1.20976 0.97337 1.00126 0.89852 1.19517 0.99569 0.91069 0.95163 1.68695 1.12388 1.29924 1.02942 1.24094 0.95456 0.97543 0.92969 1.24239 0.93842 0.90193 1.01521 1.68881 1.10155 1.30472 1.01584 1.19263 0.97719 0.93015 0.91282 1.21977 0.95754 0.81179 1.01531 1.22421 0.95116 0.99148 0.91101 0.92933 0.99134 0.95031 0.95562 0.89949 0.89441 0.90189 0.83048 0.83728 0.83865 0.80687 0.80688 0.90689 0.89226 0.95647 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.89 8.41 -34.44 -0.29 -14.18 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 9 C 0.19 4.90 4.72 -4.97 -0.02 4.87 16 10 N -0.53 -11.02 4.62 -235.46 -1.09 -12.11 16 11 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 12 C 0.10 1.29 4.88 -3.60 -0.02 1.28 16 13 N -0.60 -9.34 3.00 -173.41 -0.52 -9.86 16 14 C 0.56 9.12 7.28 -12.49 -0.09 9.03 16 15 O -0.51 -10.07 15.37 5.28 0.08 -9.99 16 16 C -0.09 -1.23 5.37 -104.63 -0.56 -1.79 16 17 C -0.07 -0.66 7.36 -39.14 -0.29 -0.95 16 18 C -0.11 -0.78 9.93 -40.03 -0.40 -1.18 16 19 C -0.06 -0.56 9.97 -39.38 -0.39 -0.95 16 20 C 0.07 0.84 6.59 -84.81 -0.56 0.28 16 21 N -0.43 -4.65 10.46 -10.82 -0.11 -4.76 16 22 C 0.07 0.64 11.21 -17.24 -0.19 0.45 16 23 C 0.08 0.78 11.22 -17.19 -0.19 0.59 16 24 N -0.40 -5.81 9.08 -10.59 -0.10 -5.91 16 25 C 0.11 1.57 6.57 -84.53 -0.56 1.02 16 26 C 0.12 1.94 6.64 -3.36 -0.02 1.91 16 27 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 30 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 33 H 0.09 0.95 4.54 -51.93 -0.24 0.72 16 34 H 0.08 0.94 7.99 -51.93 -0.41 0.53 16 35 H 0.15 1.19 5.81 -52.49 -0.31 0.88 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.18 1.13 8.06 -52.48 -0.42 0.70 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.50 7.04 -51.93 -0.37 1.13 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -35.48 351.61 -9.83 -45.31 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.39 Total: -2.12 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -3.72 Total: 3.43 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -1.08 Total: -58.22 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.48 -9.83 -45.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.063 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds